F337000

General Info

Members Datasets Scaffolds Average Seq Length
224 164 202 348

Family's Representative Sequence

Representative Sequence 3300041511|Ga0451855_0788525|Ga0451855_0788525_224_1423
Length 399
Sequence LNENKTYRIVEGDFIKTNKWLLPLSWLYGLAVKTRNTMFEMGILKTRSFQIPVISVGNITVGGTGKTPHVEYLVRLLKEQFHVAVLSRGYKRKSKGFIKAGMQTTMPEIGDEPYQMKQKFTDVTIAVDKNRCHGIDMLTEQDKKLDVILLDDAFQHRYVKPGINILLVDYHRLIIYDKLLPAGRLREPLNGKNRADIVIVTKCPKGLNPMEYRVVTKAMDLYPYQRLYFTTLEYAELQPLFTNSSTNIPTFEGLRDTHVLLLTGIASPKQLVHDLSPYTEHLQQHTFADHHLFKEKDIQLVNKTFAEMPSPKIIITTEKDATRLHNVGGLSDEVKKNIYVLPVRICFLQDQENTFNQQIRDYVRKNSRNSILAKGKDDHKSDNSDYSGNRSRTISFRDN

Samples

Sample ID Description Type Environment
1 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
2 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
3 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
4 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
5 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
6 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
7 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
8 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
9 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
10 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
11 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
12 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
13 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
14 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
15 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
16 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
17 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
18 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
19 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
20 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
21 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
22 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
23 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
24 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
27 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
28 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
29 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
30 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
31 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
32 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
33 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
34 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
37 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
38 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
48 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
49 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
54 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
65 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
69 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
70 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
71 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
72 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
73 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
74 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
101 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
102 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
103 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
104 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
105 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
106 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
107 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
110 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
111 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
112 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
113 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
114 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
115 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
116 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
120 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
121 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
122 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
123 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
124 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
125 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
126 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
127 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
128 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
129 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
130 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
131 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
132 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
133 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
134 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
135 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
136 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
137 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
138 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
139 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
140 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
141 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
142 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
143 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
144 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
145 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
146 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
147 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
148 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
149 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
151 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
152 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
153 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
154 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
155 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
156 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
157 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
158 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
159 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
160 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
161 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
162 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
163 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
164 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.73
Metatranscriptomes 0.45
Isolates 9.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.02
Nodule 1.34
Rhizoplane 0.45
Rhizosphere 79.46
Stem 0
Stem Tuber 0
Unclassified 14.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25157J39369_1003796 3300002741 Bacteria 2956
2 rootH1_10106301 3300003316 Bacteria 2862
3 rootH1_10146516 3300003316 Bacteria 1201
4 rootH2_10006212 3300003320 Bacteria 46037
5 rootH2_10038796 3300003320 Bacteria 37745
6 rootH2_10201382 3300003320 Bacteria 1674
7 rootL2_10075085 3300003322 Bacteria 5902
8 rootL2_10174455 3300003322 Bacteria 3324
9 rootL2_10376098 3300003322 Bacteria 1637
10 rootH1_10029598 3300003323 Bacteria 5175
11 rootH1_10059311 3300003323 Bacteria 8910
12 Ga0006562J51391_1003654 3300003578 Bacteria 1790
13 Ga0065165_1000703 3300005262 Bacteria 47554
14 Ga0065714_10005508 3300005288 Bacteria 6074
15 Ga0065714_10015205 3300005288 Bacteria 1592
16 Ga0070676_10002951 3300005328 Bacteria 8785
17 Ga0070683_100144411 3300005329 Bacteria 2254
18 Ga0068868_100040835 3300005338 Bacteria 3612
19 Ga0070675_100071656 3300005354 Bacteria 2875
20 Ga0070667_100251140 3300005367 Bacteria 1581
21 Ga0070678_100005186 3300005456 Bacteria 7493
22 Ga0070662_100096226 3300005457 Bacteria 2233
23 Ga0068867_100000358 3300005459 Bacteria 30357
24 Ga0070684_100120783 3300005535 Bacteria 2357
25 Ga0068853_100000201 3300005539 Bacteria 41960
26 Ga0068853_100009742 3300005539 Bacteria 7751
27 Ga0068853_100076564 3300005539 Bacteria 2921
28 Ga0070672_100038003 3300005543 Bacteria 3676
29 Ga0070693_100041973 3300005547 Bacteria 2576
30 Ga0070665_100003871 3300005548 Bacteria 15835
31 Ga0068856_100039411 3300005614 Bacteria 4639
32 Ga0068852_100019863 3300005616 Bacteria 5329
33 Ga0068852_100192605 3300005616 Bacteria 1925
34 Ga0068866_10018806 3300005718 Bacteria 3132
35 Ga0068851_10000074 3300005834 Bacteria 56589
36 Ga0075366_10000063 3300006195 Bacteria 39802
37 Ga0097621_100001851 3300006237 Bacteria 14506
38 Ga0075428_100162166 3300006844 Bacteria 2427
39 Ga0068865_100002546 3300006881 Bacteria 10807
40 Ga0099824_1000804 3300006942 Bacteria 40970
41 Ga0099826_10000723 3300006948 Bacteria 17327
42 Ga0105240_10000104 3300009093 Bacteria 172082
43 Ga0105240_10001801 3300009093 Bacteria 36072
44 Ga0105240_10003107 3300009093 Bacteria 26115
45 Ga0105240_10008767 3300009093 Bacteria 14413
46 Ga0105240_10010348 3300009093 Bacteria 13122
47 Ga0105245_10227266 3300009098 Bacteria 1803
48 Ga0105243_10156278 3300009148 Bacteria 1961
49 Ga0105241_10002563 3300009174 Bacteria 13643
50 Ga0105241_10041025 3300009174 Bacteria 3495
51 Ga0105241_10124246 3300009174 Bacteria 2082
52 Ga0105242_10023256 3300009176 Bacteria 4886
53 Ga0105237_10001254 3300009545 Bacteria 33897
54 Ga0105237_10005483 3300009545 Bacteria 14300
55 Ga0105237_10007911 3300009545 Bacteria 11584
56 Ga0105237_10154695 3300009545 Unclassified 2290
57 Ga0105238_10001485 3300009551 Bacteria 23555
58 Ga0105238_10022813 3300009551 Bacteria 6379
59 Ga0105238_10270528 3300009551 Bacteria 1680
60 Ga0105249_10198363 3300009553 Bacteria 1963
61 Ga0105239_10000864 3300010375 Bacteria 43048
62 Ga0105239_10006334 3300010375 Bacteria 13761
63 Ga0105239_10043764 3300010375 Bacteria 4909
64 Ga0105239_10342371 3300010375 Bacteria 1688
65 Ga0105246_10121964 3300011119 Bacteria 1933
66 Ga0157373_10000007 3300013100 Bacteria 216734
67 Ga0157373_10000129 3300013100 Bacteria 59252
68 Ga0157373_10063397 3300013100 Bacteria 2617
69 Ga0157371_10054048 3300013102 Bacteria 2852
70 Ga0157371_10060364 3300013102 Bacteria 2689
71 Ga0157370_10001177 3300013104 Bacteria 32660
72 Ga0157369_10006413 3300013105 Bacteria 13638
73 Ga0157374_10000002 3300013296 Bacteria 1054226
74 Ga0157374_10001179 3300013296 Bacteria 22309
75 Ga0157374_10008415 3300013296 Bacteria 8815
76 Ga0163162_10002815 3300013306 Bacteria 16545
77 Ga0157372_10002967 3300013307 Bacteria 18279
78 Ga0157372_10007970 3300013307 Bacteria 11265
79 Ga0157372_10076379 3300013307 Bacteria 3782
80 Ga0157375_10043145 3300013308 Bacteria 4372
81 Ga0157375_10077798 3300013308 Bacteria 3348
82 Ga0157380_10000432 3300014326 Bacteria 25469
83 Ga0157380_10046413 3300014326 Bacteria 3412
84 Ga0157377_10010068 3300014745 Bacteria 4667
85 Ga0157377_10142027 3300014745 Bacteria 1476
86 Ga0157376_10094378 3300014969 Bacteria 2599
87 Ga0157376_10410735 3300014969 Unclassified 1311
88 Ga0182006_1002472 3300015261 Bacteria 10082
89 Ga0213872_10003179 3300021361 Bacteria 9212
90 Ga0209026_1000273 3300025250 Bacteria 61449
91 Ga0209050_1003104 3300025298 Bacteria 12729
92 Ga0207656_10000049 3300025321 Bacteria 46520
93 Ga0207655_1000038 3300025728 Bacteria 348340
94 Ga0207642_10006872 3300025899 Bacteria 3810
95 Ga0207647_10000303 3300025904 Bacteria 40536
96 Ga0207645_10000035 3300025907 Bacteria 89345
97 Ga0207654_10005392 3300025911 Bacteria 6466
98 Ga0207654_10008098 3300025911 Bacteria 5299
99 Ga0207654_10047245 3300025911 Bacteria 2459
100 Ga0207695_10000048 3300025913 Bacteria 421800
101 Ga0207695_10000486 3300025913 Bacteria 84856
102 Ga0207695_10000681 3300025913 Bacteria 66668
103 Ga0207695_10011172 3300025913 Bacteria 10893
104 Ga0207695_10014673 3300025913 Bacteria 9264
105 Ga0207695_10023186 3300025913 Bacteria 7022
106 Ga0207671_10019842 3300025914 Bacteria 5130
107 Ga0207694_10095394 3300025924 Bacteria 2351
108 Ga0207644_10003502 3300025931 Bacteria 10158
109 Ga0207706_10001241 3300025933 Bacteria 25697
110 Ga0207706_10194038 3300025933 Bacteria 1782
111 Ga0207709_10152587 3300025935 Bacteria 1602
112 Ga0207704_10000036 3300025938 Bacteria 94574
113 Ga0207667_10011233 3300025949 Bacteria 10420
114 Ga0207658_10038824 3300025986 Bacteria 3433
115 Ga0207677_10154797 3300026023 Bacteria 1773
116 Ga0207639_10049921 3300026041 Bacteria 3175
117 Ga0207678_10033223 3300026067 Bacteria 4495
118 Ga0207702_10028982 3300026078 Bacteria 4603
119 Ga0207648_10000333 3300026089 Bacteria 51656
120 Ga0207674_10031606 3300026116 Bacteria 5559
121 Ga0207683_10007948 3300026121 Bacteria 9075
122 Ga0207698_10079143 3300026142 Bacteria 2643
123 Ga0209489_110369 3300027361 Bacteria 10572
124 Ga0268266_10004805 3300028379 Bacteria 12830
125 Ga0265318_10045529 3300028577 Bacteria 1658
126 Ga0307517_10086304 3300028786 Bacteria 2620
127 Ga0307515_10001632 3300028794 Bacteria 49830
128 Ga0307515_10008220 3300028794 Bacteria 20411
129 Ga0307515_10037889 3300028794 Bacteria 7733
130 Ga0265316_10000551 3300031344 Bacteria 42160
131 Ga0307509_10074373 3300031507 Bacteria 3534
132 Ga0307408_100000835 3300031548 Bacteria 24429
133 Ga0307405_10007843 3300031731 Bacteria 5374
134 Ga0307410_10001144 3300031852 Bacteria 11650
135 Ga0307406_10000020 3300031901 Bacteria 98526
136 Ga0307412_10101632 3300031911 Bacteria 2034
137 Ga0307416_100001944 3300032002 Bacteria 11564
138 Ga0307414_10000011 3300032004 Bacteria 338253
139 Ga0307507_10006182 3300033179 Bacteria 18677
140 Ga0307510_10007382 3300033180 Bacteria 13105
141 Ga0395899_0000001 3300037312 Bacteria 1750322
142 Ga0395899_0000499 3300037312 Bacteria 43572
143 Ga0395900_0000346 3300037418 Bacteria 68020
144 Ga0395898_0007051 3300037466 Bacteria 11941
145 Ga0395905_0000528 3300037471 Bacteria 52404
146 Ga0395901_0000351 3300038443 Bacteria 56004
147 Ga0400483_212291 3300039062 Bacteria 3949
148 Ga0436361_0296969 3300039447 Bacteria 18871
149 Ga0439466_0014835 3300041411 Bacteria 2833
150 Ga0451807_1807036 3300041486 Bacteria 1325
151 Ga0451855_0788525 3300041511 Bacteria 1569
152 Ga0451855_1757125 3300041511 Bacteria 2242
153 Ga0439455_0002865 3300042012 Bacteria 3214
154 Ga0451577_0000279 3300042876 Bacteria 99236
155 Ga0451577_0019527 3300042876 Bacteria 6231
156 Ga0453683_0000031 3300044673 Bacteria 241998
157 Ga0453683_0030077 3300044673 Bacteria 3434
158 Ga0453683_0042994 3300044673 Bacteria 2836
159 Ga0453683_0148979 3300044673 Bacteria 1478
160 Ga0466961_0034756 3300044693 Bacteria 3236
161 Ga0453684_0000929 3300044712 Bacteria 96874
162 Ga0453684_0003617 3300044712 Bacteria 34455
163 Ga0453684_0186516 3300044712 Unclassified 2430
164 Ga0466959_0001334 3300045049 Bacteria 15018
165 Ga0451576_0000414 3300045051 Bacteria 99196
166 Ga0451576_0031844 3300045051 Bacteria 5620
167 Ga0451576_0101504 3300045051 Bacteria 2992
168 Ga0451576_0126965 3300045051 Bacteria 2658
169 Ga0451576_0711887 3300045051 Bacteria 1055
170 Ga0495592_0069201 3300046454 Unclassified 2574
171 Ga0495629_0190872 3300046459 Bacteria 1418
172 Ga0495638_0000026 3300046460 Bacteria 347061
173 Ga0495585_0000302 3300046492 Bacteria 49282
174 Ga0495585_0000588 3300046492 Bacteria 34090
175 Ga0495583_0037369 3300046506 Bacteria 2302
176 Ga0495631_0003239 3300046518 Bacteria 8947
177 Ga0495637_0052996 3300046520 Bacteria 1691
178 Ga0495648_0033446 3300046524 Bacteria 3356
179 Ga0495609_0003030 3300046538 Bacteria 9894
180 Ga0495668_0000021 3300046616 Bacteria 381308
181 Ga0495634_0041786 3300046642 Unclassified 3113
182 Ga0495625_0010588 3300046660 Bacteria 7613
183 Ga0495625_0176749 3300046660 Unclassified 1422
184 Ga0495687_000793 3300047443 Bacteria 33985
185 Ga0495687_001121 3300047443 Bacteria 26035
186 Ga0495684_0282894 3300047471 Unclassified 1196
187 Ga0495686_0129265 3300047472 Bacteria 1499
188 Ga0495614_0020418 3300048089 Bacteria 2865
189 Ga0496124_0135062 3300048927 Bacteria 1954
190 Ga0501300_004864 3300049523 Unclassified 1985
191 Ga0501034_0080935 3300049571 Unclassified 3251
192 Ga0501238_000361 3300049671 Bacteria 5715
193 Ga0501269_004139 3300049766 Bacteria 1746
194 Ga0501280_001092 3300049776 Bacteria 5464
195 nmdc:mga08y16_5792_c1 3300050511 Bacteria 12945
196 Ga0500646_0003182 3300053090 Bacteria 4211
197 Ga0500641_0000010 3300053096 Bacteria 171383
198 Ga0500608_000214 3300053122 Bacteria 23145
199 Ga0500614_021700 3300053123 Bacteria 1492
200 Ga0500616_0000004 3300053153 Bacteria 1002714
201 Ga0500584_019249 3300053726 Bacteria 3165
202 Ga0466962_0022011 3300061719 Bacteria 3062

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0711887 Ga0451576_0711887_181_1032 269
2 3300025935 Ga0207709_10152587 Ga0207709_101525872 298
3 3300045051 Ga0451576_0126965 Ga0451576_0126965_61_1092 313
4 3300003320 rootH2_10006212 rootH2_1000621238 316
5 3300009093 Ga0105240_10008767 Ga0105240_1000876711 316
6 3300009093 Ga0105240_10010348 Ga0105240_100103483 316
7 3300009098 Ga0105245_10227266 Ga0105245_102272662 316
8 3300009174 Ga0105241_10002563 Ga0105241_1000256310 316
9 3300010375 Ga0105239_10043764 Ga0105239_100437645 316
10 3300011119 Ga0105246_10121964 Ga0105246_101219642 316
11 3300013100 Ga0157373_10063397 Ga0157373_100633974 316
12 3300013102 Ga0157371_10054048 Ga0157371_100540484 316
13 3300013296 Ga0157374_10001179 Ga0157374_1000117918 316
14 3300014745 Ga0157377_10010068 Ga0157377_100100683 316
15 3300025904 Ga0207647_10000303 Ga0207647_1000030314 316
16 3300025911 Ga0207654_10005392 Ga0207654_100053924 316
17 3300025913 Ga0207695_10014673 Ga0207695_100146736 316
18 3300025933 Ga0207706_10001241 Ga0207706_100012416 316
19 3300044712 Ga0453684_0003617 Ga0453684_0003617_101_1102 316
20 3300048927 Ga0496124_0135062 Ga0496124_0135062_887_1870 322
21 iso_pu_bacteria 2833640130 2833640916 325
22 iso_pu_bacteria 8056440228 8056443362 327
23 3300044673 Ga0453683_0030077 Ga0453683_0030077_421_1470 328
24 iso_pu_bacteria 2958458903 2958463116 328
25 iso_pu_bacteria 8055592153 8055595221 328
26 3300046506 Ga0495583_0037369 Ga0495583_0037369_38_1030 329
27 iso_pu_bacteria 2857613821 2857617203 329
28 iso_pu_bacteria 2904419702 2904423152 329
29 iso_pu_bacteria 2904555929 2904558656 330
30 3300041411 Ga0439466_0014835 Ga0439466_0014835_1083_2105 331
31 3300042876 Ga0451577_0000279 Ga0451577_0000279_58609_59664 331
32 3300044712 Ga0453684_0000929 Ga0453684_0000929_58609_59664 331
33 3300045051 Ga0451576_0000414 Ga0451576_0000414_58609_59664 331
34 iso_pu_bacteria 2519899754 2520879685 331
35 iso_pu_bacteria 2643221667 2644374088 331
36 iso_pu_bacteria 2643221716 2644643786 331
37 iso_pu_bacteria 2643221725 2644681679 331
38 iso_pu_bacteria 2802428842 2802654694 331
39 iso_pu_bacteria 2816332280 2817413384 331
40 iso_pu_bacteria 2881359912 2881360186 331
41 iso_pu_bacteria 2919191525 2919194380 331
42 iso_pu_bacteria 2929150217 2929150460 331
43 iso_pu_bacteria 2977268062 2977271920 331
44 iso_pu_bacteria 8054307821 8054311581 331
45 iso_pu_bacteria 8055419101 8055423415 331
46 3300005547 Ga0070693_100041973 Ga0070693_1000419732 332
47 3300031548 Ga0307408_100000835 Ga0307408_10000083512 333
48 3300031731 Ga0307405_10007843 Ga0307405_100078433 333
49 3300031852 Ga0307410_10001144 Ga0307410_100011445 333
50 3300031901 Ga0307406_10000020 Ga0307406_1000002016 333
51 3300031911 Ga0307412_10101632 Ga0307412_101016323 333
52 3300032004 Ga0307414_10000011 Ga0307414_10000011188 333
53 3300046459 Ga0495629_0190872 Ga0495629_0190872_194_1234 333
54 3300046492 Ga0495585_0000588 Ga0495585_0000588_11450_12490 333
55 3300046524 Ga0495648_0033446 Ga0495648_0033446_2274_3314 333
56 3300046660 Ga0495625_0010588 Ga0495625_0010588_1991_3031 333
57 3300049671 Ga0501238_000361 Ga0501238_000361_3444_4472 333
58 3300049766 Ga0501269_004139 Ga0501269_004139_350_1378 333
59 3300049776 Ga0501280_001092 Ga0501280_001092_4395_5423 333
60 3300053090 Ga0500646_0003182 Ga0500646_0003182_71_1087 333
61 3300053096 Ga0500641_0000010 Ga0500641_0000010_169154_170170 333
62 3300053123 Ga0500614_021700 Ga0500614_021700_144_1184 333
63 iso_pu_bacteria 2896317667 2896320319 333
64 3300003578 Ga0006562J51391_1003654 Ga0006562J51391_10036543 335
65 3300005288 Ga0065714_10005508 Ga0065714_100055083 335
66 3300005288 Ga0065714_10015205 Ga0065714_100152051 335
67 3300006942 Ga0099824_1000804 Ga0099824_10008049 335
68 3300006948 Ga0099826_10000723 Ga0099826_1000072318 335
69 3300013100 Ga0157373_10000007 Ga0157373_1000000710 335
70 3300013104 Ga0157370_10001177 Ga0157370_1000117732 335
71 3300015261 Ga0182006_1002472 Ga0182006_10024724 335
72 3300025728 Ga0207655_1000038 Ga0207655_100003845 335
73 3300027361 Ga0209489_110369 Ga0209489_1103694 335
74 3300028794 Ga0307515_10008220 Ga0307515_1000822011 335
75 3300032002 Ga0307416_100001944 Ga0307416_1000019448 335
76 3300033179 Ga0307507_10006182 Ga0307507_100061826 335
77 3300041486 Ga0451807_1807036 Ga0451807_1807036_151_1173 335
78 3300046538 Ga0495609_0003030 Ga0495609_0003030_7228_8268 335
79 3300046616 Ga0495668_0000021 Ga0495668_0000021_225122_226162 335
80 3300048089 Ga0495614_0020418 Ga0495614_0020418_1160_2200 335
81 3300053726 Ga0500584_019249 Ga0500584_019249_174_1196 335
82 iso_pu_bacteria 2739367866 2740032753 335
83 3300003316 rootH1_10146516 rootH1_101465161 336
84 3300028794 Ga0307515_10001632 Ga0307515_1000163233 336
85 3300028794 Ga0307515_10037889 Ga0307515_100378893 337
86 3300042876 Ga0451577_0019527 Ga0451577_0019527_2001_3056 337
87 3300044673 Ga0453683_0000031 Ga0453683_0000031_196814_197869 337
88 3300044673 Ga0453683_0042994 Ga0453683_0042994_1059_2114 337
89 3300044673 Ga0453683_0148979 Ga0453683_0148979_193_1248 337
90 3300045051 Ga0451576_0031844 Ga0451576_0031844_4479_5534 337
91 3300045051 Ga0451576_0101504 Ga0451576_0101504_1719_2774 337
92 3300049571 Ga0501034_0080935 Ga0501034_0080935_1160_2191 338
93 3300003322 rootL2_10174455 rootL2_101744552 339
94 3300025298 Ga0209050_1003104 Ga0209050_10031041 339
95 3300046460 Ga0495638_0000026 Ga0495638_0000026_21953_22987 339
96 3300053153 Ga0500616_0000004 Ga0500616_0000004_204964_205998 339
97 3300006844 Ga0075428_100162166 Ga0075428_1001621662 340
98 3300014326 Ga0157380_10046413 Ga0157380_100464132 340
99 3300031507 Ga0307509_10074373 Ga0307509_100743733 340
100 3300046660 Ga0495625_0176749 Ga0495625_0176749_155_1192 340
101 3300050511 nmdc:mga08y16_5792_c1 nmdc:mga08y16_5792_c1_626_1663 340
102 3300003320 rootH2_10201382 rootH2_102013821 341
103 3300003322 rootL2_10075085 rootL2_100750852 341
104 3300003323 rootH1_10029598 rootH1_100295985 341
105 3300003323 rootH1_10059311 rootH1_100593113 341
106 3300005262 Ga0065165_1000703 Ga0065165_100070322 341
107 3300013296 Ga0157374_10000002 Ga0157374_10000002815 341
108 3300044693 Ga0466961_0034756 Ga0466961_0034756_914_1981 341
109 3300045049 Ga0466959_0001334 Ga0466959_0001334_1103_2170 341
110 3300061719 Ga0466962_0022011 Ga0466962_0022011_718_1785 341
111 3300005329 Ga0070683_100144411 Ga0070683_1001444111 342
112 3300014745 Ga0157377_10142027 Ga0157377_101420272 342
113 iso_pu_bacteria 2898713307 2898714625 342
114 3300049523 Ga0501300_004864 Ga0501300_004864_168_1223 343
115 3300005354 Ga0070675_100071656 Ga0070675_1000716564 344
116 3300005834 Ga0068851_10000074 Ga0068851_1000007412 344
117 3300009553 Ga0105249_10198363 Ga0105249_101983632 344
118 3300014326 Ga0157380_10000432 Ga0157380_1000043214 344
119 3300025321 Ga0207656_10000049 Ga0207656_1000004917 344
120 3300044712 Ga0453684_0186516 Ga0453684_0186516_606_1676 344
121 3300003322 rootL2_10376098 rootL2_103760982 345
122 3300006195 Ga0075366_10000063 Ga0075366_100000636 345
123 3300046492 Ga0495585_0000302 Ga0495585_0000302_23_1066 346
124 3300046520 Ga0495637_0052996 Ga0495637_0052996_90_1133 346
125 3300047443 Ga0495687_000793 Ga0495687_000793_29882_30925 346
126 3300003316 rootH1_10106301 rootH1_101063012 348
127 3300005616 Ga0068852_100192605 Ga0068852_1001926052 348
128 3300025924 Ga0207694_10095394 Ga0207694_100953942 348
129 3300026142 Ga0207698_10079143 Ga0207698_100791432 348
130 3300005539 Ga0068853_100000201 Ga0068853_10000020119 351
131 3300009093 Ga0105240_10001801 Ga0105240_1000180122 351
132 3300009093 Ga0105240_10003107 Ga0105240_1000310710 351
133 3300009545 Ga0105237_10154695 Ga0105237_101546952 351
134 3300009551 Ga0105238_10022813 Ga0105238_100228135 351
135 3300010375 Ga0105239_10006334 Ga0105239_100063345 351
136 3300025913 Ga0207695_10000486 Ga0207695_1000048634 351
137 3300025913 Ga0207695_10000681 Ga0207695_1000068121 351
138 3300025913 Ga0207695_10011172 Ga0207695_1001117211 351
139 3300005328 Ga0070676_10002951 Ga0070676_100029517 352
140 3300005338 Ga0068868_100040835 Ga0068868_1000408353 352
141 3300005456 Ga0070678_100005186 Ga0070678_1000051866 352
142 3300005457 Ga0070662_100096226 Ga0070662_1000962263 352
143 3300005459 Ga0068867_100000358 Ga0068867_10000035819 352
144 3300005539 Ga0068853_100009742 Ga0068853_1000097425 352
145 3300005539 Ga0068853_100076564 Ga0068853_1000765642 352
146 3300005543 Ga0070672_100038003 Ga0070672_1000380033 352
147 3300005548 Ga0070665_100003871 Ga0070665_1000038716 352
148 3300005616 Ga0068852_100019863 Ga0068852_1000198633 352
149 3300005718 Ga0068866_10018806 Ga0068866_100188062 352
150 3300006237 Ga0097621_100001851 Ga0097621_1000018519 352
151 3300006881 Ga0068865_100002546 Ga0068865_1000025463 352
152 3300009148 Ga0105243_10156278 Ga0105243_101562782 352
153 3300009174 Ga0105241_10124246 Ga0105241_101242462 352
154 3300009176 Ga0105242_10023256 Ga0105242_100232562 352
155 3300009545 Ga0105237_10005483 Ga0105237_100054835 352
156 3300009551 Ga0105238_10001485 Ga0105238_1000148510 352
157 3300010375 Ga0105239_10342371 Ga0105239_103423711 352
158 3300013296 Ga0157374_10008415 Ga0157374_100084153 352
159 3300013306 Ga0163162_10002815 Ga0163162_1000281512 352
160 3300013307 Ga0157372_10076379 Ga0157372_100763793 352
161 3300013308 Ga0157375_10077798 Ga0157375_100777983 352
162 3300014969 Ga0157376_10094378 Ga0157376_100943781 352
163 3300021361 Ga0213872_10003179 Ga0213872_100031799 352
164 3300025899 Ga0207642_10006872 Ga0207642_100068722 352
165 3300025907 Ga0207645_10000035 Ga0207645_1000003594 352
166 3300025911 Ga0207654_10047245 Ga0207654_100472452 352
167 3300025913 Ga0207695_10023186 Ga0207695_100231865 352
168 3300025931 Ga0207644_10003502 Ga0207644_100035026 352
169 3300025933 Ga0207706_10194038 Ga0207706_101940381 352
170 3300025938 Ga0207704_10000036 Ga0207704_1000003635 352
171 3300025949 Ga0207667_10011233 Ga0207667_100112332 352
172 3300026023 Ga0207677_10154797 Ga0207677_101547972 352
173 3300026041 Ga0207639_10049921 Ga0207639_100499213 352
174 3300026089 Ga0207648_10000333 Ga0207648_1000033352 352
175 3300026121 Ga0207683_10007948 Ga0207683_100079482 352
176 3300028379 Ga0268266_10004805 Ga0268266_100048058 352
177 3300037312 Ga0395899_0000499 Ga0395899_0000499_21836_22897 352
178 3300037418 Ga0395900_0000346 Ga0395900_0000346_25351_26412 352
179 3300037466 Ga0395898_0007051 Ga0395898_0007051_783_1844 352
180 3300037471 Ga0395905_0000528 Ga0395905_0000528_41592_42653 352
181 3300038443 Ga0395901_0000351 Ga0395901_0000351_41093_42154 352
182 3300039062 Ga0400483_212291 Ga0400483_212291_196_1302 352
183 3300039447 Ga0436361_0296969 Ga0436361_0296969_10405_11466 352
184 3300041511 Ga0451855_0788525 Ga0451855_0788525_224_1423 352
185 3300042012 Ga0439455_0002865 Ga0439455_0002865_876_1937 352
186 3300047443 Ga0495687_001121 Ga0495687_001121_19713_20774 352
187 3300003320 rootH2_10038796 rootH2_100387963 353
188 3300005367 Ga0070667_100251140 Ga0070667_1002511401 353
189 3300005614 Ga0068856_100039411 Ga0068856_1000394112 353
190 3300009093 Ga0105240_10000104 Ga0105240_1000010447 353
191 3300009174 Ga0105241_10041025 Ga0105241_100410253 353
192 3300009545 Ga0105237_10001254 Ga0105237_1000125416 353
193 3300009545 Ga0105237_10007911 Ga0105237_1000791110 353
194 3300009551 Ga0105238_10270528 Ga0105238_102705282 353
195 3300010375 Ga0105239_10000864 Ga0105239_1000086416 353
196 3300013102 Ga0157371_10060364 Ga0157371_100603643 353
197 3300013105 Ga0157369_10006413 Ga0157369_100064133 353
198 3300013307 Ga0157372_10002967 Ga0157372_100029672 353
199 3300013308 Ga0157375_10043145 Ga0157375_100431454 353
200 3300014969 Ga0157376_10410735 Ga0157376_104107351 353
201 3300025911 Ga0207654_10008098 Ga0207654_100080984 353
202 3300025913 Ga0207695_10000048 Ga0207695_10000048113 353
203 3300025914 Ga0207671_10019842 Ga0207671_100198423 353
204 3300025986 Ga0207658_10038824 Ga0207658_100388241 353
205 3300026067 Ga0207678_10033223 Ga0207678_100332235 353
206 3300026078 Ga0207702_10028982 Ga0207702_100289822 353
207 3300026116 Ga0207674_10031606 Ga0207674_100316065 353
208 3300028577 Ga0265318_10045529 Ga0265318_100455291 353
209 3300028786 Ga0307517_10086304 Ga0307517_100863042 353
210 3300033180 Ga0307510_10007382 Ga0307510_100073823 353
211 3300037312 Ga0395899_0000001 Ga0395899_0000001_593237_594331 353
212 3300041511 Ga0451855_1757125 Ga0451855_1757125_1023_2219 353
213 3300046454 Ga0495592_0069201 Ga0495592_0069201_494_1585 353
214 3300046518 Ga0495631_0003239 Ga0495631_0003239_2990_4054 353
215 3300046642 Ga0495634_0041786 Ga0495634_0041786_324_1415 353
216 3300047471 Ga0495684_0282894 Ga0495684_0282894_32_1123 353
217 3300053122 Ga0500608_000214 Ga0500608_000214_1457_2521 353
218 3300002741 JGI25157J39369_1003796 JGI25157J39369_10037962 354
219 3300005535 Ga0070684_100120783 Ga0070684_1001207832 354
220 3300013100 Ga0157373_10000129 Ga0157373_1000012974 354
221 3300013307 Ga0157372_10007970 Ga0157372_100079709 354
222 3300025250 Ga0209026_1000273 Ga0209026_10002733 354
223 3300031344 Ga0265316_10000551 Ga0265316_1000055120 354
224 3300047472 Ga0495686_0129265 Ga0495686_0129265_314_1381 354

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02606

LpxK

Tetraacyldisaccharide-1-P 4'-kinase

17

364

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4itm-assembly1.cif.gz_A "crystal structure of ""apo"" form lpxk from aquifex aeolicus in complex with atp at 2.2 angstrom resolution" 0.8187 5 344
4itm-assembly1.cif.gz_A "crystal structure of ""apo"" form lpxk from aquifex aeolicus in complex with atp at 2.2 angstrom resolution" 0.8115 5 344
3clh-assembly1.cif.gz_B crystal structure of 3-dehydroquinate synthase (dhqs)from helicobacter pylori 0.6512 238 298
4r0m-assembly2.cif.gz_A structure of mcyg a-pcp complexed with phenylalanyl-adenylate 0.6489 234 322
3rg8-assembly1.cif.gz_G crystal structure of treponema denticola pure 0.6397 238 299
ID Description Score Start End Superfamily
af_P27300_12_322_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8473 6 340 3.40.50.300
af_P27300_12_322_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8396 6 340 3.40.50.300
af_I1KYA1_28_391_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8339 9 344 3.40.50.300
af_I1KYA1_28_391_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7919 9 344 3.40.50.300
af_A0A1D6KF80_27_384_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.791 17 347 3.40.50.300
ID Description Score Start End GO Terms
AF-H1Y306-F1-model_v4 Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A 4'-kinase) 0.9924 3 345 GO:0005524
GO:0005886
GO:0009029
GO:0009244
GO:0009245
AF-A0A4Q5QV91-F1-model_v4 Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) 0.9812 1 181 GO:0005524
GO:0005886
GO:0009029
GO:0009244
GO:0009245
AF-H1Y306-F1-model_v4 Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A 4'-kinase) 0.981 3 345 GO:0005524
GO:0005886
GO:0009029
GO:0009244
GO:0009245
AF-A0A7W1PUE9-F1-model_v4 Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A 4'-kinase) 0.9768 6 346 GO:0005524
GO:0005886
GO:0009029
GO:0009244
GO:0009245
AF-A0A0S8JU20-F1-model_v4 Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) 0.9763 5 202 GO:0005524
GO:0005886
GO:0009029
GO:0009244
GO:0009245

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Predicted Structure (AlphaFold2)

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