F331189

General Info

Members Datasets Scaffolds Average Seq Length
219 174 438 244

Family's Representative Sequence

Representative Sequence 3300025941|Ga0207711_10031853|Ga0207711_100318532
Length 276
Sequence VPGKKKELNSPAQPCVSGEVLLDTRDPPFDTTELRRGLKEFFSRPLSDWPELFPNPPVTKGNKSKAITLGSVKWGVYAFVDYDGEPIYVGQTRESLSGRVGRHLTNQRTDAVAMSVLDPYEVKQIRVWPLVCYQGIVKKDDLSAWDDAVDHLNSLERHIFEILVERSRFNAILNEKNPPPGKSCEVPPVIDQPPIITGEVARLRSHPDTRIARRSMVISRLAQVIAERELRTPGLRRTLATQAVRLHWLATERFRALGGEGLVENRSEDESDSGDE

Samples

Sample ID Description Type Environment
1 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
61 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
62 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
66 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
69 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
70 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
73 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
85 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
86 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
87 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
88 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
89 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
92 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
95 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
96 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
97 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
98 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
99 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
100 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
101 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
102 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
103 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
104 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
105 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
117 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
118 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
119 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
124 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
125 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
126 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
127 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
128 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
129 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
130 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
131 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
132 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
133 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
134 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
135 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
136 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
137 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
138 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
139 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
140 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
141 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
142 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
143 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
144 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
145 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
146 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
147 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
148 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
149 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
150 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
151 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
152 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
153 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
154 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
155 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
156 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
157 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
158 2643221558 Rhizobium sp. Root149 Isolate Unclassified
159 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
160 2643221642 Caulobacter sp. Root343 Isolate Unclassified
161 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
162 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
163 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
164 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
165 2869256925 Mesorhizobium sp. M7A.F.Ca.MR.176.00.0.0 Isolate Nodule
166 2874123672 Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 Isolate Nodule
167 2885305155 Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 Isolate Nodule
168 2885312484 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Isolate Nodule
169 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
170 2968097103 Mesorhizobium sp. M1A.F.Ca.IN.020.30.1.1 Isolate Nodule
171 2979742915 Mesorhizobium sp. M2A.F.Ca.ET.046.02.1.1 Isolate Nodule
172 2979779861 Mesorhizobium sp. M1A.F.Ca.IN.022.02.1.1 Isolate Nodule
173 2996893221 Rhizobium sp. R635 Isolate Nodule
174 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.78
Metatranscriptomes 0
Isolates 8.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21
Nodule 4.57
Rhizoplane 1.37
Rhizosphere 61.64
Stem 0
Stem Tuber 0
Unclassified 2.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207711_10031853 3300025941 Bacteria 4455
2 JGI24739J22299_10092483 3300001989 Bacteria 919
3 rootH1_10147928 3300003316 Bacteria 1493
4 Ga0055528_1001493 3300003790 Bacteria 14192
5 Ga0070658_10357603 3300005327 Bacteria 1250
6 Ga0070683_100297429 3300005329 Bacteria 1535
7 Ga0070680_100358178 3300005336 Unclassified 1241
8 Ga0070660_100037292 3300005339 Bacteria 3685
9 Ga0070675_100256904 3300005354 Bacteria 1530
10 Ga0070674_100018490 3300005356 Bacteria 4408
11 Ga0070659_100039856 3300005366 Bacteria 3668
12 Ga0070663_100041151 3300005455 Bacteria 3239
13 Ga0070678_100004823 3300005456 Bacteria 7698
14 Ga0068867_100198174 3300005459 Bacteria 1606
15 Ga0070707_100151369 3300005468 Bacteria 2259
16 Ga0068855_100168479 3300005563 Bacteria 2481
17 Ga0068856_100133735 3300005614 Bacteria 2485
18 Ga0068856_100202540 3300005614 Bacteria 1999
19 Ga0068859_100259563 3300005617 Bacteria 1828
20 Ga0068863_100085683 3300005841 Bacteria 2985
21 Ga0070717_10023865 3300006028 Bacteria 4853
22 Ga0075366_10005828 3300006195 Bacteria 6692
23 Ga0097621_100017352 3300006237 Bacteria 5464
24 Ga0097620_100259561 3300006931 Bacteria 1828
25 Ga0105240_10100878 3300009093 Bacteria 3512
26 Ga0105243_10000531 3300009148 Bacteria 38752
27 Ga0105242_10001724 3300009176 Bacteria 17264
28 Ga0105248_10000315 3300009177 Bacteria 57362
29 Ga0105238_10396612 3300009551 Bacteria 1373
30 Ga0105239_10002576 3300010375 Bacteria 22976
31 Ga0105239_10542640 3300010375 Bacteria 1324
32 Ga0157373_10095830 3300013100 Bacteria 2089
33 Ga0157371_10004361 3300013102 Bacteria 12389
34 Ga0157370_10074607 3300013104 Bacteria 3199
35 Ga0157370_10190140 3300013104 Bacteria 1906
36 Ga0157369_10008298 3300013105 Bacteria 11906
37 Ga0157369_10020584 3300013105 Bacteria 7375
38 Ga0157369_10082232 3300013105 Bacteria 3445
39 Ga0157378_10005055 3300013297 Bacteria 11582
40 Ga0157378_10063078 3300013297 Bacteria 3310
41 Ga0157372_10158936 3300013307 Bacteria 2611
42 Ga0157375_10000786 3300013308 Bacteria 27726
43 Ga0157375_11018386 3300013308 Bacteria 967
44 Ga0163163_10217756 3300014325 Bacteria 1958
45 Ga0157380_10049657 3300014326 Bacteria 3310
46 Ga0157379_10291213 3300014968 Bacteria 1487
47 Ga0213876_10015657 3300021384 Bacteria 4014
48 Ga0209673_1001825 3300025273 Bacteria 17429
49 Ga0209564_1025097 3300025295 Bacteria 2017
50 Ga0209256_1006303 3300025299 Bacteria 6353
51 Ga0209256_1017252 3300025299 Bacteria 2409
52 Ga0207647_10185185 3300025904 Bacteria 1208
53 Ga0207705_10214400 3300025909 Bacteria 1461
54 Ga0207695_10135440 3300025913 Bacteria 2416
55 Ga0207660_10373731 3300025917 Unclassified 1145
56 Ga0207657_10005774 3300025919 Bacteria 12905
57 Ga0207646_10258742 3300025922 Bacteria 1573
58 Ga0207659_10194740 3300025926 Bacteria 1615
59 Ga0207686_10002006 3300025934 Bacteria 11234
60 Ga0207709_10000856 3300025935 Bacteria 23262
61 Ga0207669_10004599 3300025937 Bacteria 6090
62 Ga0207711_10002573 3300025941 Bacteria 16140
63 Ga0207678_10048188 3300026067 Bacteria 3683
64 Ga0207702_10102576 3300026078 Bacteria 2528
65 Ga0207641_10020135 3300026088 Bacteria 5477
66 Ga0207648_10301445 3300026089 Bacteria 1437
67 Ga0207683_10004084 3300026121 Bacteria 12604
68 Ga0207698_10221182 3300026142 Bacteria 1711
69 Ga0265319_1006439 3300028563 Bacteria 5436
70 Ga0265318_10000256 3300028577 Bacteria 46214
71 Ga0265336_10043038 3300028666 Bacteria 1378
72 Ga0307515_10036566 3300028794 Bacteria 7938
73 Ga0307515_10043537 3300028794 Bacteria 6974
74 Ga0265338_10015533 3300028800 Bacteria 8351
75 Ga0265338_10076049 3300028800 Unclassified 2846
76 Ga0265338_10127540 3300028800 Bacteria 2016
77 Ga0265332_10056897 3300031238 Bacteria 1676
78 Ga0265328_10014585 3300031239 Bacteria 3093
79 Ga0265320_10000104 3300031240 Bacteria 72302
80 Ga0265320_10000120 3300031240 Bacteria 68719
81 Ga0265329_10002388 3300031242 Bacteria 8522
82 Ga0265340_10003692 3300031247 Bacteria 8618
83 Ga0265331_10000253 3300031250 Bacteria 63343
84 Ga0265331_10000725 3300031250 Bacteria 27871
85 Ga0265327_10004542 3300031251 Bacteria 12232
86 Ga0265327_10105945 3300031251 Bacteria 1350
87 Ga0265316_10007043 3300031344 Bacteria 10655
88 Ga0265313_10000918 3300031595 Bacteria 29448
89 Ga0265314_10001180 3300031711 Bacteria 29993
90 Ga0265342_10001248 3300031712 Bacteria 24004
91 Ga0307406_10515509 3300031901 Bacteria 972
92 Ga0307412_10028542 3300031911 Bacteria 3492
93 Ga0307412_10075426 3300031911 Bacteria 2313
94 Ga0307510_10057080 3300033180 Bacteria 4057
95 Ga0395899_0012304 3300037312 Bacteria 6555
96 Ga0395900_0021766 3300037418 Bacteria 6555
97 Ga0395898_0000950 3300037466 Bacteria 46158
98 Ga0395898_0025993 3300037466 Bacteria 5896
99 Ga0395905_0012720 3300037471 Bacteria 8093
100 Ga0395901_0004316 3300038443 Bacteria 14351
101 Ga0395901_0021864 3300038443 Bacteria 6555
102 Ga0395901_0080422 3300038443 Plasmid 3403
103 Ga0395901_0319747 3300038443 Bacteria 1606
104 Ga0400486_17028 3300038742 Bacteria 3718
105 Ga0400483_284199 3300039062 Bacteria 2612
106 Ga0400487_39247 3300039110 Bacteria 5254
107 Ga0436365_0035336 3300039437 Bacteria 883
108 Ga0436365_0658056 3300039437 Bacteria 4484
109 Ga0451577_0002245 3300042876 Bacteria 23453
110 Ga0453684_0011499 3300044712 Bacteria 14822
111 Ga0453684_0099587 3300044712 Bacteria 3560
112 Ga0451576_0431199 3300045051 Bacteria 1383
113 Ga0495590_0002774 3300046457 Bacteria 7226
114 Ga0495629_0071986 3300046459 Bacteria 2413
115 Ga0495638_0000443 3300046460 Bacteria 49906
116 Ga0495650_0075815 3300046471 Bacteria 1308
117 Ga0495606_0251292 3300046507 Bacteria 981
118 Ga0495610_0004941 3300046512 Bacteria 9665
119 Ga0495610_0067610 3300046512 Unclassified 1678
120 Ga0495616_0167307 3300046513 Bacteria 985
121 Ga0495620_0019790 3300046515 Bacteria 3300
122 Ga0495620_0034624 3300046515 Bacteria 2279
123 Ga0495631_0003646 3300046518 Bacteria 8407
124 Ga0495637_0035444 3300046520 Bacteria 2178
125 Ga0495648_0000066 3300046524 Bacteria 140767
126 Ga0495654_0061659 3300046530 Bacteria 1800
127 Ga0495654_0072616 3300046530 Bacteria 1628
128 Ga0495609_0086958 3300046538 Bacteria 1362
129 Ga0495597_0015250 3300046542 Bacteria 3640
130 Ga0495622_0090413 3300046557 Bacteria 1406
131 Ga0495668_0003342 3300046616 Bacteria 12092
132 Ga0495668_0148753 3300046616 Bacteria 1282
133 Ga0495673_0000333 3300047469 Bacteria 60696
134 Ga0495686_0000617 3300047472 Bacteria 49100
135 Ga0495686_0001131 3300047472 Bacteria 31525
136 Ga0495686_0197874 3300047472 Bacteria 1155
137 Ga0496102_0132885 3300048905 Bacteria 2330
138 Ga0496103_0033480 3300048906 Bacteria 3140
139 Ga0496107_0301178 3300048910 Bacteria 1193
140 Ga0496117_0056034 3300048920 Bacteria 2749
141 Ga0496118_0218179 3300048921 Bacteria 1113
142 Ga0496119_0003707 3300048922 Bacteria 15643
143 Ga0496119_0076020 3300048922 Bacteria 1949
144 Ga0496121_0000272 3300048924 Bacteria 108051
145 Ga0496121_0254900 3300048924 Bacteria 1215
146 Ga0496124_0000716 3300048927 Bacteria 54336
147 Ga0496125_0038897 3300048928 Bacteria 4107
148 Ga0495678_001686 3300049459 Bacteria 16735
149 Ga0501034_0170610 3300049571 Bacteria 2143
150 Ga0501037_0170518 3300049573 Bacteria 1547
151 Ga0501047_0195352 3300049581 Bacteria 1886
152 Ga0501035_0044064 3300049822 Bacteria 4019
153 Ga0501035_0045476 3300049822 Bacteria 3950
154 Ga0501035_0128610 3300049822 Unclassified 2209
155 Ga0501044_0009962 3300049823 Bacteria 10325
156 Ga0501044_0050037 3300049823 Bacteria 4313
157 Ga0501044_0266007 3300049823 Bacteria 1652
158 Ga0501044_0349904 3300049823 Bacteria 1397
159 nmdc:mga0k408_3765_c1 3300050493 Bacteria 8042
160 Ga0495601_0000457 3300053077 Bacteria 21452
161 Ga0495612_0056549 3300053078 Bacteria 1619
162 Ga0500635_0003436 3300053080 Bacteria 3985
163 Ga0495619_0001842 3300053085 Bacteria 14108
164 Ga0500578_0002245 3300053086 Bacteria 16755
165 Ga0500644_0000109 3300053088 Bacteria 52262
166 Ga0500644_0007722 3300053088 Bacteria 2811
167 Ga0500644_0011008 3300053088 Bacteria 2461
168 Ga0500583_0054167 3300053092 Bacteria 1873
169 Ga0500651_0104253 3300053093 Bacteria 1736
170 Ga0500651_0322253 3300053093 Bacteria 882
171 Ga0500566_0022598 3300053094 Bacteria 3695
172 Ga0500555_016005 3300053103 Bacteria 2161
173 Ga0500556_0028997 3300053104 Bacteria 1862
174 Ga0500562_007589 3300053108 Bacteria 2735
175 Ga0500569_005484 3300053109 Bacteria 2728
176 Ga0500594_0010429 3300053118 Bacteria 2157
177 Ga0500595_003183 3300053119 Bacteria 7770
178 Ga0500607_021108 3300053121 Bacteria 3672
179 Ga0500608_004136 3300053122 Bacteria 5565
180 Ga0500614_006995 3300053123 Bacteria 2372
181 Ga0500642_0030360 3300053130 Bacteria 2248
182 Ga0500642_0081714 3300053130 Bacteria 1485
183 Ga0500658_0040011 3300053134 Bacteria 1876
184 Ga0500658_0048768 3300053134 Bacteria 1723
185 Ga0500559_0006533 3300053136 Bacteria 5263
186 Ga0500559_0037074 3300053136 Bacteria 2112
187 Ga0500564_000087 3300053138 Bacteria 23585
188 Ga0500568_0114905 3300053139 Bacteria 1005
189 Ga0500588_0075772 3300053146 Bacteria 1114
190 Ga0500590_011828 3300053148 Bacteria 4434
191 Ga0500616_0052752 3300053153 Viruses 2137
192 Ga0500622_0001016 3300053156 Bacteria 23549
193 Ga0500622_0002229 3300053156 Bacteria 14273
194 Ga0500624_000009 3300053157 Bacteria 178763
195 Ga0500636_0001180 3300053177 Bacteria 14107
196 Ga0500636_0169096 3300053177 Bacteria 1184
197 Ga0500636_0190742 3300053177 Bacteria 1092
198 Ga0500637_0009963 3300053178 Bacteria 4859
199 Ga0500637_0100086 3300053178 Bacteria 1681
200 Ga0500625_062969 3300053729 Bacteria 1676
201 Ga0500661_001931 3300055283 Bacteria 3912
202 2585148001 2582581279 Bacteria 4980720
203 2643812070 2643221558 Bacteria 5460675
204 2644085945 2643221614 Bacteria 4260023
205 2644236673 2643221642 Bacteria 5357871
206 2644345078 2643221661 Bacteria 4267604
207 2644353632 2643221663 Bacteria 3425771
208 2644369351 2643221666 Bacteria 4265935
209 2671693440 2671180139 Bacteria 4196045
210 2869258906 2869256925 Bacteria 6981691
211 2874125110 2874123672 Bacteria 7238285
212 2885305483 2885305155 Bacteria 7348390
213 2885315106 2885312484 Bacteria 6415165
214 2958075974 2958071322 Bacteria 6815895
215 2968097699 2968097103 Bacteria 6107094
216 2979744187 2979742915 Bacteria 7301278
217 2979783118 2979779861 Bacteria 6219781
218 2996893495 2996893221 Bacteria 5823108
219 8004320118 8004312739 Bacteria 7444653
220 Ga0207711_10031853
221 JGI24739J22299_10092483
222 rootH1_10147928
223 Ga0055528_1001493
224 Ga0070658_10357603
225 Ga0070683_100297429
226 Ga0070680_100358178
227 Ga0070660_100037292
228 Ga0070675_100256904
229 Ga0070674_100018490
230 Ga0070659_100039856
231 Ga0070663_100041151
232 Ga0070678_100004823
233 Ga0068867_100198174
234 Ga0070707_100151369
235 Ga0068855_100168479
236 Ga0068856_100133735
237 Ga0068856_100202540
238 Ga0068859_100259563
239 Ga0068863_100085683
240 Ga0070717_10023865
241 Ga0075366_10005828
242 Ga0097621_100017352
243 Ga0097620_100259561
244 Ga0105240_10100878
245 Ga0105243_10000531
246 Ga0105242_10001724
247 Ga0105248_10000315
248 Ga0105238_10396612
249 Ga0105239_10002576
250 Ga0105239_10542640
251 Ga0157373_10095830
252 Ga0157371_10004361
253 Ga0157370_10074607
254 Ga0157370_10190140
255 Ga0157369_10008298
256 Ga0157369_10020584
257 Ga0157369_10082232
258 Ga0157378_10005055
259 Ga0157378_10063078
260 Ga0157372_10158936
261 Ga0157375_10000786
262 Ga0157375_11018386
263 Ga0163163_10217756
264 Ga0157380_10049657
265 Ga0157379_10291213
266 Ga0213876_10015657
267 Ga0209673_1001825
268 Ga0209564_1025097
269 Ga0209256_1006303
270 Ga0209256_1017252
271 Ga0207647_10185185
272 Ga0207705_10214400
273 Ga0207695_10135440
274 Ga0207660_10373731
275 Ga0207657_10005774
276 Ga0207646_10258742
277 Ga0207659_10194740
278 Ga0207686_10002006
279 Ga0207709_10000856
280 Ga0207669_10004599
281 Ga0207711_10002573
282 Ga0207678_10048188
283 Ga0207702_10102576
284 Ga0207641_10020135
285 Ga0207648_10301445
286 Ga0207683_10004084
287 Ga0207698_10221182
288 Ga0265319_1006439
289 Ga0265318_10000256
290 Ga0265336_10043038
291 Ga0307515_10036566
292 Ga0307515_10043537
293 Ga0265338_10015533
294 Ga0265338_10076049
295 Ga0265338_10127540
296 Ga0265332_10056897
297 Ga0265328_10014585
298 Ga0265320_10000104
299 Ga0265320_10000120
300 Ga0265329_10002388
301 Ga0265340_10003692
302 Ga0265331_10000253
303 Ga0265331_10000725
304 Ga0265327_10004542
305 Ga0265327_10105945
306 Ga0265316_10007043
307 Ga0265313_10000918
308 Ga0265314_10001180
309 Ga0265342_10001248
310 Ga0307406_10515509
311 Ga0307412_10028542
312 Ga0307412_10075426
313 Ga0307510_10057080
314 Ga0395899_0012304
315 Ga0395900_0021766
316 Ga0395898_0000950
317 Ga0395898_0025993
318 Ga0395905_0012720
319 Ga0395901_0004316
320 Ga0395901_0021864
321 Ga0395901_0080422
322 Ga0395901_0319747
323 Ga0400486_17028
324 Ga0400483_284199
325 Ga0400487_39247
326 Ga0436365_0035336
327 Ga0436365_0658056
328 Ga0451577_0002245
329 Ga0453684_0011499
330 Ga0453684_0099587
331 Ga0451576_0431199
332 Ga0495590_0002774
333 Ga0495629_0071986
334 Ga0495638_0000443
335 Ga0495650_0075815
336 Ga0495606_0251292
337 Ga0495610_0004941
338 Ga0495610_0067610
339 Ga0495616_0167307
340 Ga0495620_0019790
341 Ga0495620_0034624
342 Ga0495631_0003646
343 Ga0495637_0035444
344 Ga0495648_0000066
345 Ga0495654_0061659
346 Ga0495654_0072616
347 Ga0495609_0086958
348 Ga0495597_0015250
349 Ga0495622_0090413
350 Ga0495668_0003342
351 Ga0495668_0148753
352 Ga0495673_0000333
353 Ga0495686_0000617
354 Ga0495686_0001131
355 Ga0495686_0197874
356 Ga0496102_0132885
357 Ga0496103_0033480
358 Ga0496107_0301178
359 Ga0496117_0056034
360 Ga0496118_0218179
361 Ga0496119_0003707
362 Ga0496119_0076020
363 Ga0496121_0000272
364 Ga0496121_0254900
365 Ga0496124_0000716
366 Ga0496125_0038897
367 Ga0495678_001686
368 Ga0501034_0170610
369 Ga0501037_0170518
370 Ga0501047_0195352
371 Ga0501035_0044064
372 Ga0501035_0045476
373 Ga0501035_0128610
374 Ga0501044_0009962
375 Ga0501044_0050037
376 Ga0501044_0266007
377 Ga0501044_0349904
378 nmdc:mga0k408_3765_c1
379 Ga0495601_0000457
380 Ga0495612_0056549
381 Ga0500635_0003436
382 Ga0495619_0001842
383 Ga0500578_0002245
384 Ga0500644_0000109
385 Ga0500644_0007722
386 Ga0500644_0011008
387 Ga0500583_0054167
388 Ga0500651_0104253
389 Ga0500651_0322253
390 Ga0500566_0022598
391 Ga0500555_016005
392 Ga0500556_0028997
393 Ga0500562_007589
394 Ga0500569_005484
395 Ga0500594_0010429
396 Ga0500595_003183
397 Ga0500607_021108
398 Ga0500608_004136
399 Ga0500614_006995
400 Ga0500642_0030360
401 Ga0500642_0081714
402 Ga0500658_0040011
403 Ga0500658_0048768
404 Ga0500559_0006533
405 Ga0500559_0037074
406 Ga0500564_000087
407 Ga0500568_0114905
408 Ga0500588_0075772
409 Ga0500590_011828
410 Ga0500616_0052752
411 Ga0500622_0001016
412 Ga0500622_0002229
413 Ga0500624_000009
414 Ga0500636_0001180
415 Ga0500636_0169096
416 Ga0500636_0190742
417 Ga0500637_0009963
418 Ga0500637_0100086
419 Ga0500625_062969
420 Ga0500661_001931
421 2585148001
422 2643812070
423 2644085945
424 2644236673
425 2644345078
426 2644353632
427 2644369351
428 2671693440
429 2869258906
430 2874125110
431 2885305483
432 2885315106
433 2958075974
434 2968097699
435 2979744187
436 2979783118
437 2996893495
438 8004320118

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01541

GIY-YIG

GIY-YIG catalytic domain

73

161

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7pic-assembly1.cif.gz_N 70s ribosome with p/e-site trna in spectinomycin-treated mycoplasma pneumoniae cells 0.9145 160 207
8cwo-assembly1.cif.gz_O cutibacterium acnes 30s ribosomal subunit with sarecycline bound, body domain only in the local refined map 0.9024 163 215
7unv-assembly1.cif.gz_o pseudomonas aeruginosa 70s ribosome initiation complex bound to if2-gdpcp (structure ii-a) 0.8768 162 215
5fvl-assembly2.cif.gz_B crystal structure of vps4-vps20 complex from s.cerevisiae 0.8596 158 214
4v69-assembly1.cif.gz_AO ternary complex-bound e.coli 70s ribosome. 0.8398 162 211
ID Description Score Start End Superfamily
3fxdB00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.9341 167 210 1.20.58.90
af_Q54KQ7_163_241_1.20.58.80 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.9162 163 211 1.20.58.80
af_O75351_1_89_1.20.58.80 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.8743 163 216 1.20.58.80
af_P52917_1_82_1.20.58.80 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.8701 158 215 1.20.58.80
af_Q8BLK9_233_308_1.20.58.80 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.8697 158 209 1.20.58.80
ID Description Score Start End GO Terms
AF-A0A1F9VQ43-F1-model_v4 GIY-YIG domain-containing protein 0.9649 1 213
AF-A0A5N9G2W4-F1-model_v4 GIY-YIG nuclease family protein 0.9532 2 215
AF-A0A3N7BPW8-F1-model_v4 deleted 0.953 7 214
AF-A0A6L7WYH0-F1-model_v4 GIY-YIG nuclease family protein 0.9513 9 214
AF-A0A2V4NXR6-F1-model_v4 deleted 0.9498 7 214

Map