F328641

General Info

Members Datasets Scaffolds Average Seq Length
217 161 212 298

Family's Representative Sequence

Representative Sequence 3300006844|Ga0075428_100018568|Ga0075428_1000185683
Length 325
Sequence MTLGPEGREGPEARPARVMDGSEWLAGRFEEHRPHLRAVAYRMLGSLAEADDAVQDAWERVDRAGADDVDNLKAWLTTVVARVCLNVLRSRNTHPEEPLEAHVPDPIVSPADRPDPEEEVLLADSVGLALQIVIDTLGPAERLAFVLHDMFHLSFGEIAAMIGRSPEATRQLASRARRRIKGAEVPTPERDVARQRAVVDAFFAAGRAGDFDALVALLHPDVVARADFGPGRPGASRVLRGAAAVARQARLGANAAAVLHPALVNGAAGVVITLNGEPFSLMGFTVADGKIVEVDVIADPDRIARLAAPVLAGAGRQPGLDDHRS

Samples

Sample ID Description Type Environment
1 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
2 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
3 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
4 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
5 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
6 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
7 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
76 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
86 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
87 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
89 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
90 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
91 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
92 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
93 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
94 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
95 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
96 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
97 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
98 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
99 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
100 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
101 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
102 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
105 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
108 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
109 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
110 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
111 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
112 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
115 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
116 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
117 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
118 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
119 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
120 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
121 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
122 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
123 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
124 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
125 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
126 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
127 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
128 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
129 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
130 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
131 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
132 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
133 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
134 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
135 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
136 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
137 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
138 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
139 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
140 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
141 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
142 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
143 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
144 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
145 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
146 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
147 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
148 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
149 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
150 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
151 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
152 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
153 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
154 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
155 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
156 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
157 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
158 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
159 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
160 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
161 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.7
Metatranscriptomes 0
Isolates 2.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.15
Nodule 0
Rhizoplane 1.38
Rhizosphere 88.02
Stem 0
Stem Tuber 0
Unclassified 6.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10016332 3300001990 Bacteria 2397
2 JGI24735J21928_10044473 3300002067 Bacteria 1290
3 Ga0070691_10135427 3300005341 Bacteria 1251
4 Ga0070714_100102764 3300005435 Bacteria 2520
5 Ga0070713_100027996 3300005436 Bacteria 4444
6 Ga0070708_100320131 3300005445 Bacteria 1461
7 Ga0070708_100382878 3300005445 Bacteria 1326
8 Ga0070663_100159694 3300005455 Bacteria 1734
9 Ga0070681_10003509 3300005458 Bacteria 14690
10 Ga0070681_10039509 3300005458 Bacteria 4729
11 Ga0070681_10291787 3300005458 Bacteria 1541
12 Ga0070706_100000518 3300005467 Bacteria 45110
13 Ga0070706_100006525 3300005467 Bacteria 11012
14 Ga0070707_100051536 3300005468 Bacteria 3946
15 Ga0070698_100221770 3300005471 Bacteria 1824
16 Ga0070699_100217151 3300005518 Bacteria 1703
17 Ga0070679_100069662 3300005530 Bacteria 3508
18 Ga0070684_100143654 3300005535 Bacteria 2159
19 Ga0068853_100022456 3300005539 Bacteria 5270
20 Ga0070696_100118240 3300005546 Bacteria 1916
21 Ga0068855_100000797 3300005563 Bacteria 39066
22 Ga0068857_100006020 3300005577 Bacteria 10357
23 Ga0068856_100000847 3300005614 Bacteria 32944
24 Ga0068858_100074409 3300005842 Bacteria 3154
25 Ga0068860_100200801 3300005843 Bacteria 1932
26 Ga0068860_100203169 3300005843 Bacteria 1921
27 Ga0081455_10002946 3300005937 Bacteria 19937
28 Ga0081455_10035491 3300005937 Bacteria 4455
29 Ga0081455_10042062 3300005937 Bacteria 4012
30 Ga0081455_10048072 3300005937 Bacteria 3689
31 Ga0081538_10000837 3300005981 Bacteria 33338
32 Ga0081538_10012574 3300005981 Bacteria 6778
33 Ga0081540_1000187 3300005983 Bacteria 64679
34 Ga0081539_10021608 3300005985 Bacteria 4289
35 Ga0075368_10019320 3300006042 Bacteria 2571
36 Ga0075432_10019944 3300006058 Bacteria 2293
37 Ga0075367_10000180 3300006178 Bacteria 20556
38 Ga0075367_10219294 3300006178 Bacteria 1190
39 Ga0097621_100126862 3300006237 Bacteria 2168
40 Ga0068871_100000105 3300006358 Bacteria 50666
41 Ga0075428_100018568 3300006844 Bacteria 7686
42 Ga0075430_100000987 3300006846 Bacteria 22451
43 Ga0075431_100007436 3300006847 Bacteria 10909
44 Ga0075431_100121452 3300006847 Bacteria 2696
45 Ga0075431_100214093 3300006847 Bacteria 1967
46 Ga0075431_100243102 3300006847 Bacteria 1830
47 Ga0075429_100003695 3300006880 Bacteria 13035
48 Ga0075429_100008012 3300006880 Bacteria 9177
49 Ga0075429_100162764 3300006880 Bacteria 1954
50 Ga0099794_10000641 3300007265 Bacteria 11638
51 Ga0105245_10081732 3300009098 Bacteria 2954
52 Ga0114129_10194873 3300009147 Bacteria 2748
53 Ga0114129_10256182 3300009147 Bacteria 2347
54 Ga0105248_10218454 3300009177 Bacteria 2146
55 Ga0105248_10225927 3300009177 Bacteria 2107
56 Ga0105237_10202704 3300009545 Unclassified 1984
57 Ga0105238_10291528 3300009551 Bacteria 1614
58 Ga0105239_10012144 3300010375 Bacteria 9604
59 Ga0105246_10012477 3300011119 Bacteria 5305
60 Ga0157371_10139108 3300013102 Bacteria 1729
61 Ga0157369_10001167 3300013105 Bacteria 32776
62 Ga0157369_10264214 3300013105 Bacteria 1794
63 Ga0157374_10000638 3300013296 Bacteria 30846
64 Ga0157378_10002003 3300013297 Bacteria 18216
65 Ga0157372_10000861 3300013307 Bacteria 32902
66 Ga0157376_10048734 3300014969 Bacteria 3505
67 Ga0213875_10012121 3300021388 Bacteria 4264
68 Ga0207647_10063109 3300025904 Bacteria 2254
69 Ga0207684_10000523 3300025910 Bacteria 47487
70 Ga0207684_10056111 3300025910 Bacteria 3341
71 Ga0207707_10002410 3300025912 Bacteria 16836
72 Ga0207707_10175926 3300025912 Bacteria 1869
73 Ga0207707_10329167 3300025912 Bacteria 1318
74 Ga0207652_10051612 3300025921 Bacteria 3526
75 Ga0207694_10003241 3300025924 Bacteria 12967
76 Ga0207700_10139722 3300025928 Bacteria 1989
77 Ga0207664_10015890 3300025929 Bacteria 5480
78 Ga0207667_10000802 3300025949 Bacteria 40809
79 Ga0207677_10023318 3300026023 Bacteria 3821
80 Ga0207703_10083515 3300026035 Bacteria 2669
81 Ga0207639_10016063 3300026041 Bacteria 5289
82 Ga0207702_10018997 3300026078 Bacteria 5687
83 Ga0207674_10005647 3300026116 Bacteria 14835
84 Ga0207675_100331503 3300026118 Bacteria 1488
85 Ga0207698_10048684 3300026142 Bacteria 3219
86 Ga0209588_1008080 3300027671 Bacteria 3113
87 Ga0209813_10009007 3300027866 Bacteria 2539
88 Ga0268264_10167453 3300028381 Bacteria 1985
89 Ga0268264_10278049 3300028381 Bacteria 1567
90 Ga0307511_10008356 3300030521 Bacteria 10361
91 Ga0307513_10049096 3300031456 Bacteria 4574
92 Ga0307509_10010852 3300031507 Bacteria 11106
93 Ga0307509_10015168 3300031507 Bacteria 9011
94 Ga0307514_10022748 3300031649 Bacteria 5090
95 Ga0307514_10206087 3300031649 Bacteria 1228
96 Ga0307516_10007178 3300031730 Bacteria 12861
97 Ga0307516_10014602 3300031730 Bacteria 8301
98 Ga0307405_10071075 3300031731 Bacteria 2238
99 Ga0307406_10077128 3300031901 Bacteria 2204
100 Ga0307406_10295351 3300031901 Bacteria 1242
101 Ga0307409_100064216 3300031995 Bacteria 2883
102 Ga0307416_100064758 3300032002 Bacteria 3000
103 Ga0307414_10450859 3300032004 Bacteria 1128
104 Ga0307411_10258036 3300032005 Bacteria 1375
105 Ga0307415_100030733 3300032126 Bacteria 3451
106 Ga0307415_100103675 3300032126 Bacteria 2093
107 Ga0307507_10036990 3300033179 Bacteria 4974
108 Ga0373926_0001164 3300035083 Bacteria 7828
109 Ga0373923_0068560 3300035111 Bacteria 1519
110 Ga0373953_0019779 3300035117 Bacteria 2509
111 Ga0373954_0119575 3300035118 Bacteria 1278
112 Ga0373956_0028536 3300035119 Bacteria 2429
113 Ga0373956_0039192 3300035119 Bacteria 2099
114 Ga0373955_0016214 3300035172 Bacteria 3663
115 Ga0373935_0000438 3300035692 Bacteria 21715
116 Ga0373933_0067388 3300035724 Bacteria 2171
117 Ga0373947_0000003 3300035725 Bacteria 345338
118 Ga0373937_0039672 3300036401 Bacteria 4292
119 Ga0395898_0006686 3300037466 Bacteria 12296
120 Ga0436364_0065319 3300037853 Bacteria 8635
121 Ga0395901_0474978 3300038443 Bacteria 1276
122 Ga0439442_013179 3300042002 Bacteria 1696
123 Ga0439463_002534 3300042016 Bacteria 4641
124 Ga0439458_0031602 3300042157 Bacteria 1263
125 Ga0439460_0059069 3300042461 Bacteria 1167
126 Ga0466969_0204873 3300044656 Bacteria 899
127 Ga0466972_0026951 3300044658 Bacteria 2846
128 Ga0466965_0012371 3300044683 Bacteria 4012
129 Ga0466965_0022820 3300044683 Bacteria 3019
130 Ga0466965_0290621 3300044683 Bacteria 885
131 Ga0466966_0007527 3300044684 Bacteria 7213
132 Ga0466961_0003928 3300044693 Bacteria 9295
133 Ga0466963_0001470 3300044694 Bacteria 12720
134 Ga0466963_0015992 3300044694 Bacteria 4658
135 Ga0466963_0078201 3300044694 Bacteria 2236
136 Ga0466963_0276620 3300044694 Bacteria 1180
137 Ga0466964_0007697 3300044706 Bacteria 4033
138 Ga0466964_0096804 3300044706 Bacteria 1294
139 Ga0466971_0000199 3300044719 Bacteria 23105
140 Ga0466971_0023452 3300044719 Bacteria 2751
141 Ga0466968_0128167 3300044735 Bacteria 1153
142 Ga0466970_0002035 3300044765 Bacteria 9785
143 Ga0466970_0057131 3300044765 Bacteria 2086
144 Ga0466970_0146373 3300044765 Bacteria 1303
145 Ga0466957_0000128 3300044842 Bacteria 32238
146 Ga0466957_0002424 3300044842 Bacteria 10011
147 Ga0466959_0066864 3300045049 Bacteria 2606
148 Ga0466958_0001905 3300045836 Bacteria 10204
149 Ga0466967_0005788 3300045976 Bacteria 8644
150 Ga0466967_0007683 3300045976 Bacteria 7810
151 Ga0466967_0099228 3300045976 Bacteria 2660
152 Ga0466967_0151061 3300045976 Bacteria 2171
153 Ga0495629_0035362 3300046459 Bacteria 3530
154 Ga0495651_0026473 3300046462 Bacteria 4517
155 Ga0495651_0115208 3300046462 Bacteria 1982
156 Ga0495582_0010190 3300046473 Bacteria 5176
157 Ga0495662_0001502 3300046476 Bacteria 11570
158 Ga0495664_0000456 3300046477 Bacteria 20099
159 Ga0495594_0075237 3300046499 Bacteria 1882
160 Ga0495618_0009149 3300046514 Bacteria 5978
161 Ga0495652_0010161 3300046529 Bacteria 8533
162 Ga0495586_0024508 3300046535 Bacteria 3226
163 Ga0495587_0003183 3300046536 Bacteria 10978
164 Ga0495634_0005190 3300046642 Bacteria 10058
165 Ga0495635_0001562 3300046663 Bacteria 15373
166 Ga0495588_0195841 3300046674 Bacteria 1067
167 Ga0495657_0010510 3300046675 Bacteria 6964
168 Ga0495657_0023981 3300046675 Bacteria 4352
169 Ga0495623_0236811 3300046679 Bacteria 1033
170 Ga0495646_0048398 3300046680 Bacteria 2582
171 Ga0495658_0019920 3300046683 Bacteria 3509
172 Ga0495613_0002485 3300046689 Bacteria 13909
173 Ga0495671_0131378 3300046692 Bacteria 1221
174 Ga0495649_0030100 3300046694 Bacteria 2999
175 Ga0495600_0051457 3300046809 Bacteria 2688
176 Ga0495581_0072577 3300047315 Bacteria 1991
177 Ga0495604_0004805 3300047317 Bacteria 10712
178 Ga0495674_0081225 3300047319 Bacteria 2781
179 Ga0495676_0017521 3300047321 Bacteria 6331
180 Ga0495687_002377 3300047443 Bacteria 15202
181 Ga0495675_0021856 3300047444 Bacteria 4076
182 Ga0495675_0128411 3300047444 Bacteria 1577
183 Ga0495593_0002431 3300047673 Bacteria 11191
184 Ga0495602_0028299 3300048088 Bacteria 5366
185 Ga0495602_0056635 3300048088 Bacteria 3445
186 Ga0495602_0215498 3300048088 Bacteria 1453
187 Ga0495614_0003328 3300048089 Bacteria 7184
188 Ga0496104_0139745 3300048907 Bacteria 2327
189 Ga0496110_0563158 3300048913 Bacteria 1035
190 Ga0496112_0002993 3300048915 Bacteria 13801
191 Ga0496126_0009432 3300048929 Bacteria 10362
192 nmdc:mga06z11_19076_c1 3300050494 Bacteria 3146
193 nmdc:mga04h51_10549_c1 3300050495 Bacteria 2540
194 nmdc:mga05p37_34371_c1 3300050507 Bacteria 6209
195 nmdc:mga05p37_82440_c1 3300050507 Bacteria 3962
196 nmdc:mga09592_45899_c1 3300050508 Bacteria 3679
197 nmdc:mga09592_466651_c1 3300050508 Bacteria 1088
198 nmdc:mga09592_55343_c1 3300050508 Bacteria 3353
199 nmdc:mga09592_83388_c1 3300050508 Bacteria 2725
200 nmdc:mga0qj67_107155_c1 3300050509 Bacteria 2254
201 nmdc:mga0qj67_2205_c1 3300050509 Bacteria 13846
202 nmdc:mga0qj67_34638_c1 3300050509 Bacteria 3945
203 nmdc:mga06r32_1044_c1 3300050510 Bacteria 24972
204 nmdc:mga06r32_176064_c1 3300050510 Bacteria 2124
205 nmdc:mga06r32_179563_c1 3300050510 Bacteria 2102
206 nmdc:mga06r32_7722_c1 3300050510 Bacteria 9675
207 Ga0495612_0072815 3300053078 Bacteria 1435
208 Ga0500583_0098788 3300053092 Bacteria 1428
209 Ga0500640_044760 3300053095 Bacteria 1942
210 Ga0500553_020007 3300053101 Bacteria 3392
211 Ga0466962_0039877 3300061719 Bacteria 2248
212 Ga0466962_0142920 3300061719 Bacteria 1159

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044683 Ga0466965_0290621 Ga0466965_0290621_67_861 262
2 3300044694 Ga0466963_0015992 Ga0466963_0015992_1856_2650 262
3 3300007265 Ga0099794_10000641 Ga0099794_100006415 264
4 3300053078 Ga0495612_0072815 Ga0495612_0072815_12_845 265
5 3300061719 Ga0466962_0039877 Ga0466962_0039877_1390_2193 267
6 3300035118 Ga0373954_0119575 Ga0373954_0119575_38_901 269
7 3300050508 nmdc:mga09592_466651_c1 nmdc:mga09592_466651_c1_61_891 269
8 3300027671 Ga0209588_1008080 Ga0209588_10080802 271
9 3300035119 Ga0373956_0028536 Ga0373956_0028536_1304_2203 271
10 3300046675 Ga0495657_0023981 Ga0495657_0023981_2530_3429 271
11 3300047444 Ga0495675_0021856 Ga0495675_0021856_1961_2860 271
12 3300048088 Ga0495602_0028299 Ga0495602_0028299_2966_3865 271
13 3300044656 Ga0466969_0204873 Ga0466969_0204873_44_868 272
14 3300006058 Ga0075432_10019944 Ga0075432_100199442 273
15 3300050510 nmdc:mga06r32_176064_c1 nmdc:mga06r32_176064_c1_951_1832 273
16 iso_pu_bacteria 3006493962 3006500234 279
17 3300005937 Ga0081455_10035491 Ga0081455_100354912 283
18 3300005518 Ga0070699_100217151 Ga0070699_1002171512 284
19 3300005546 Ga0070696_100118240 Ga0070696_1001182402 284
20 3300005937 Ga0081455_10002946 Ga0081455_100029465 284
21 3300009545 Ga0105237_10202704 Ga0105237_102027041 285
22 3300021388 Ga0213875_10012121 Ga0213875_100121213 285
23 3300037853 Ga0436364_0065319 Ga0436364_0065319_321_1199 285
24 3300045976 Ga0466967_0099228 Ga0466967_0099228_439_1305 285
25 iso_pu_bacteria 2818991472 2819741734 285
26 3300005445 Ga0070708_100320131 Ga0070708_1003201311 288
27 3300005981 Ga0081538_10000837 Ga0081538_1000083720 288
28 3300030521 Ga0307511_10008356 Ga0307511_100083563 288
29 3300044706 Ga0466964_0096804 Ga0466964_0096804_337_1227 288
30 3300033179 Ga0307507_10036990 Ga0307507_100369903 289
31 3300044694 Ga0466963_0078201 Ga0466963_0078201_928_1839 289
32 3300044765 Ga0466970_0146373 Ga0466970_0146373_272_1180 289
33 3300046459 Ga0495629_0035362 Ga0495629_0035362_94_999 289
34 3300046462 Ga0495651_0026473 Ga0495651_0026473_1967_2872 289
35 3300046473 Ga0495582_0010190 Ga0495582_0010190_1543_2448 289
36 3300046476 Ga0495662_0001502 Ga0495662_0001502_7189_8094 289
37 3300046477 Ga0495664_0000456 Ga0495664_0000456_8230_9135 289
38 3300046514 Ga0495618_0009149 Ga0495618_0009149_710_1615 289
39 3300046529 Ga0495652_0010161 Ga0495652_0010161_405_1310 289
40 3300046535 Ga0495586_0024508 Ga0495586_0024508_1850_2755 289
41 3300046536 Ga0495587_0003183 Ga0495587_0003183_3087_3992 289
42 3300046642 Ga0495634_0005190 Ga0495634_0005190_2691_3596 289
43 3300046663 Ga0495635_0001562 Ga0495635_0001562_11024_11929 289
44 3300046675 Ga0495657_0010510 Ga0495657_0010510_2404_3309 289
45 3300046679 Ga0495623_0236811 Ga0495623_0236811_39_944 289
46 3300046680 Ga0495646_0048398 Ga0495646_0048398_1219_2124 289
47 3300046683 Ga0495658_0019920 Ga0495658_0019920_119_1024 289
48 3300046689 Ga0495613_0002485 Ga0495613_0002485_7724_8629 289
49 3300046809 Ga0495600_0051457 Ga0495600_0051457_1092_1997 289
50 3300047315 Ga0495581_0072577 Ga0495581_0072577_119_1024 289
51 3300047317 Ga0495604_0004805 Ga0495604_0004805_3270_4175 289
52 3300047319 Ga0495674_0081225 Ga0495674_0081225_195_1100 289
53 3300047321 Ga0495676_0017521 Ga0495676_0017521_4523_5428 289
54 3300047444 Ga0495675_0128411 Ga0495675_0128411_119_1024 289
55 3300047673 Ga0495593_0002431 Ga0495593_0002431_3701_4606 289
56 3300048088 Ga0495602_0056635 Ga0495602_0056635_2410_3315 289
57 3300048089 Ga0495614_0003328 Ga0495614_0003328_820_1725 289
58 3300053095 Ga0500640_044760 Ga0500640_044760_459_1364 289
59 3300053101 Ga0500553_020007 Ga0500553_020007_1359_2264 289
60 iso_pu_bacteria 2895427314 2895429453 289
61 iso_pu_bacteria 2895880812 2895889239 289
62 3300005981 Ga0081538_10012574 Ga0081538_100125743 290
63 3300044694 Ga0466963_0276620 Ga0466963_0276620_145_1035 290
64 3300045976 Ga0466967_0151061 Ga0466967_0151061_961_1833 290
65 3300005842 Ga0068858_100074409 Ga0068858_1000744092 291
66 3300005843 Ga0068860_100200801 Ga0068860_1002008012 291
67 3300009098 Ga0105245_10081732 Ga0105245_100817322 291
68 3300009177 Ga0105248_10225927 Ga0105248_102259272 291
69 3300026035 Ga0207703_10083515 Ga0207703_100835153 291
70 3300026118 Ga0207675_100331503 Ga0207675_1003315032 291
71 3300028381 Ga0268264_10278049 Ga0268264_102780492 291
72 3300035083 Ga0373926_0001164 Ga0373926_0001164_5738_6637 291
73 3300035692 Ga0373935_0000438 Ga0373935_0000438_11801_12700 291
74 3300035725 Ga0373947_0000003 Ga0373947_0000003_128523_129422 291
75 3300044683 Ga0466965_0022820 Ga0466965_0022820_1432_2307 291
76 3300044694 Ga0466963_0001470 Ga0466963_0001470_11682_12557 291
77 3300044719 Ga0466971_0023452 Ga0466971_0023452_105_980 291
78 3300044765 Ga0466970_0057131 Ga0466970_0057131_930_1805 291
79 3300044842 Ga0466957_0002424 Ga0466957_0002424_1838_2713 291
80 3300045976 Ga0466967_0007683 Ga0466967_0007683_3151_4026 291
81 3300050509 nmdc:mga0qj67_107155_c1 nmdc:mga0qj67_107155_c1_987_1934 291
82 3300005435 Ga0070714_100102764 Ga0070714_1001027643 292
83 3300005436 Ga0070713_100027996 Ga0070713_1000279967 292
84 3300005455 Ga0070663_100159694 Ga0070663_1001596942 292
85 3300005458 Ga0070681_10291787 Ga0070681_102917872 292
86 3300005467 Ga0070706_100000518 Ga0070706_10000051810 292
87 3300005471 Ga0070698_100221770 Ga0070698_1002217702 292
88 3300013105 Ga0157369_10264214 Ga0157369_102642142 292
89 3300025910 Ga0207684_10000523 Ga0207684_100005238 292
90 3300025912 Ga0207707_10329167 Ga0207707_103291671 292
91 3300025928 Ga0207700_10139722 Ga0207700_101397222 292
92 3300025929 Ga0207664_10015890 Ga0207664_100158902 292
93 3300031731 Ga0307405_10071075 Ga0307405_100710752 292
94 3300031901 Ga0307406_10295351 Ga0307406_102953512 292
95 3300032004 Ga0307414_10450859 Ga0307414_104508591 292
96 3300032005 Ga0307411_10258036 Ga0307411_102580362 292
97 3300032126 Ga0307415_100030733 Ga0307415_1000307333 292
98 3300042016 Ga0439463_002534 Ga0439463_002534_3328_4209 292
99 3300042461 Ga0439460_0059069 Ga0439460_0059069_93_974 292
100 3300048929 Ga0496126_0009432 Ga0496126_0009432_3900_4802 292
101 iso_pu_bacteria 2582581314 2585315078 292
102 3300005341 Ga0070691_10135427 Ga0070691_101354271 293
103 3300005445 Ga0070708_100382878 Ga0070708_1003828781 293
104 3300005458 Ga0070681_10003509 Ga0070681_1000350912 293
105 3300005458 Ga0070681_10039509 Ga0070681_100395097 293
106 3300005467 Ga0070706_100006525 Ga0070706_10000652510 293
107 3300005468 Ga0070707_100051536 Ga0070707_1000515365 293
108 3300005530 Ga0070679_100069662 Ga0070679_1000696621 293
109 3300005535 Ga0070684_100143654 Ga0070684_1001436541 293
110 3300005539 Ga0068853_100022456 Ga0068853_1000224566 293
111 3300005563 Ga0068855_100000797 Ga0068855_1000007978 293
112 3300005577 Ga0068857_100006020 Ga0068857_1000060202 293
113 3300005614 Ga0068856_100000847 Ga0068856_10000084737 293
114 3300005843 Ga0068860_100203169 Ga0068860_1002031692 293
115 3300005937 Ga0081455_10042062 Ga0081455_100420624 293
116 3300005937 Ga0081455_10048072 Ga0081455_100480722 293
117 3300005983 Ga0081540_1000187 Ga0081540_100018727 293
118 3300005985 Ga0081539_10021608 Ga0081539_100216085 293
119 3300006237 Ga0097621_100126862 Ga0097621_1001268621 293
120 3300006358 Ga0068871_100000105 Ga0068871_10000010528 293
121 3300006844 Ga0075428_100018568 Ga0075428_1000185683 293
122 3300006846 Ga0075430_100000987 Ga0075430_10000098715 293
123 3300006847 Ga0075431_100007436 Ga0075431_1000074367 293
124 3300006847 Ga0075431_100214093 Ga0075431_1002140932 293
125 3300006847 Ga0075431_100243102 Ga0075431_1002431022 293
126 3300006880 Ga0075429_100003695 Ga0075429_1000036957 293
127 3300006880 Ga0075429_100008012 Ga0075429_1000080127 293
128 3300006880 Ga0075429_100162764 Ga0075429_1001627643 293
129 3300009147 Ga0114129_10194873 Ga0114129_101948731 293
130 3300009147 Ga0114129_10256182 Ga0114129_102561821 293
131 3300009177 Ga0105248_10218454 Ga0105248_102184543 293
132 3300009551 Ga0105238_10291528 Ga0105238_102915282 293
133 3300010375 Ga0105239_10012144 Ga0105239_100121448 293
134 3300013102 Ga0157371_10139108 Ga0157371_101391082 293
135 3300013105 Ga0157369_10001167 Ga0157369_100011671 293
136 3300013296 Ga0157374_10000638 Ga0157374_100006381 293
137 3300013297 Ga0157378_10002003 Ga0157378_100020032 293
138 3300013307 Ga0157372_10000861 Ga0157372_100008612 293
139 3300014969 Ga0157376_10048734 Ga0157376_100487341 293
140 3300025910 Ga0207684_10056111 Ga0207684_100561112 293
141 3300025912 Ga0207707_10002410 Ga0207707_1000241013 293
142 3300025912 Ga0207707_10175926 Ga0207707_101759262 293
143 3300025921 Ga0207652_10051612 Ga0207652_100516124 293
144 3300025924 Ga0207694_10003241 Ga0207694_1000324112 293
145 3300025949 Ga0207667_10000802 Ga0207667_1000080228 293
146 3300026023 Ga0207677_10023318 Ga0207677_100233184 293
147 3300026041 Ga0207639_10016063 Ga0207639_100160633 293
148 3300026078 Ga0207702_10018997 Ga0207702_100189972 293
149 3300026116 Ga0207674_10005647 Ga0207674_100056472 293
150 3300026142 Ga0207698_10048684 Ga0207698_100486842 293
151 3300028381 Ga0268264_10167453 Ga0268264_101674532 293
152 3300031901 Ga0307406_10077128 Ga0307406_100771281 293
153 3300031995 Ga0307409_100064216 Ga0307409_1000642162 293
154 3300032002 Ga0307416_100064758 Ga0307416_1000647582 293
155 3300032126 Ga0307415_100103675 Ga0307415_1001036752 293
156 3300035111 Ga0373923_0068560 Ga0373923_0068560_565_1500 293
157 3300035117 Ga0373953_0019779 Ga0373953_0019779_968_1903 293
158 3300035119 Ga0373956_0039192 Ga0373956_0039192_307_1242 293
159 3300035172 Ga0373955_0016214 Ga0373955_0016214_505_1440 293
160 3300035724 Ga0373933_0067388 Ga0373933_0067388_129_1064 293
161 3300036401 Ga0373937_0039672 Ga0373937_0039672_216_1151 293
162 3300038443 Ga0395901_0474978 Ga0395901_0474978_190_1089 293
163 3300046462 Ga0495651_0115208 Ga0495651_0115208_844_1779 293
164 3300048088 Ga0495602_0215498 Ga0495602_0215498_353_1288 293
165 3300048907 Ga0496104_0139745 Ga0496104_0139745_1114_2022 293
166 3300048913 Ga0496110_0563158 Ga0496110_0563158_109_1017 293
167 3300048915 Ga0496112_0002993 Ga0496112_0002993_12513_13421 293
168 3300050507 nmdc:mga05p37_34371_c1 nmdc:mga05p37_34371_c1_375_1352 293
169 3300050507 nmdc:mga05p37_82440_c1 nmdc:mga05p37_82440_c1_337_1305 293
170 3300050508 nmdc:mga09592_45899_c1 nmdc:mga09592_45899_c1_2558_3526 293
171 3300050508 nmdc:mga09592_55343_c1 nmdc:mga09592_55343_c1_1241_2131 293
172 3300050508 nmdc:mga09592_83388_c1 nmdc:mga09592_83388_c1_1438_2415 293
173 3300050509 nmdc:mga0qj67_2205_c1 nmdc:mga0qj67_2205_c1_12866_13756 293
174 3300050509 nmdc:mga0qj67_34638_c1 nmdc:mga0qj67_34638_c1_772_1746 293
175 3300050510 nmdc:mga06r32_1044_c1 nmdc:mga06r32_1044_c1_19361_20251 293
176 3300050510 nmdc:mga06r32_7722_c1 nmdc:mga06r32_7722_c1_1534_2511 293
177 3300061719 Ga0466962_0142920 Ga0466962_0142920_122_1003 293
178 3300006847 Ga0075431_100121452 Ga0075431_1001214522 295
179 3300046694 Ga0495649_0030100 Ga0495649_0030100_1718_2611 295
180 3300050510 nmdc:mga06r32_179563_c1 nmdc:mga06r32_179563_c1_1148_2044 295
181 3300001990 JGI24737J22298_10016332 JGI24737J22298_100163321 296
182 3300002067 JGI24735J21928_10044473 JGI24735J21928_100444731 296
183 3300006042 Ga0075368_10019320 Ga0075368_100193202 296
184 3300006178 Ga0075367_10000180 Ga0075367_1000018013 296
185 3300006178 Ga0075367_10219294 Ga0075367_102192942 296
186 3300011119 Ga0105246_10012477 Ga0105246_100124775 296
187 3300025904 Ga0207647_10063109 Ga0207647_100631092 296
188 3300027866 Ga0209813_10009007 Ga0209813_100090072 296
189 3300031456 Ga0307513_10049096 Ga0307513_100490965 296
190 3300031507 Ga0307509_10010852 Ga0307509_1001085211 296
191 3300031507 Ga0307509_10015168 Ga0307509_100151682 296
192 3300031649 Ga0307514_10022748 Ga0307514_100227482 296
193 3300031649 Ga0307514_10206087 Ga0307514_102060871 296
194 3300031730 Ga0307516_10007178 Ga0307516_1000717811 296
195 3300031730 Ga0307516_10014602 Ga0307516_100146028 296
196 3300037466 Ga0395898_0006686 Ga0395898_0006686_10486_11382 296
197 3300042002 Ga0439442_013179 Ga0439442_013179_252_1163 296
198 3300042157 Ga0439458_0031602 Ga0439458_0031602_268_1170 296
199 3300044658 Ga0466972_0026951 Ga0466972_0026951_687_1583 296
200 3300044683 Ga0466965_0012371 Ga0466965_0012371_690_1586 296
201 3300044684 Ga0466966_0007527 Ga0466966_0007527_4026_4922 296
202 3300044693 Ga0466961_0003928 Ga0466961_0003928_618_1514 296
203 3300044706 Ga0466964_0007697 Ga0466964_0007697_153_1049 296
204 3300044719 Ga0466971_0000199 Ga0466971_0000199_21403_22299 296
205 3300044735 Ga0466968_0128167 Ga0466968_0128167_153_1049 296
206 3300044765 Ga0466970_0002035 Ga0466970_0002035_5055_5951 296
207 3300044842 Ga0466957_0000128 Ga0466957_0000128_5459_6355 296
208 3300045049 Ga0466959_0066864 Ga0466959_0066864_230_1126 296
209 3300045836 Ga0466958_0001905 Ga0466958_0001905_7492_8388 296
210 3300045976 Ga0466967_0005788 Ga0466967_0005788_7482_8378 296
211 3300046499 Ga0495594_0075237 Ga0495594_0075237_673_1566 296
212 3300046674 Ga0495588_0195841 Ga0495588_0195841_71_976 296
213 3300046692 Ga0495671_0131378 Ga0495671_0131378_146_1039 296
214 3300047443 Ga0495687_002377 Ga0495687_002377_9068_9961 296
215 3300050494 nmdc:mga06z11_19076_c1 nmdc:mga06z11_19076_c1_1543_2433 296
216 3300050495 nmdc:mga04h51_10549_c1 nmdc:mga04h51_10549_c1_1131_2021 296
217 3300053092 Ga0500583_0098788 Ga0500583_0098788_156_1049 296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

28

93

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

128

180

0.94

PF12680

SnoaL_2

SnoaL-like domain

199

294

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9156 113 166
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.8847 108 166
1h3l-assembly1.cif.gz_A n-terminal fragment of sigr from streptomyces coelicolor 0.879 4 68
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.8592 112 170
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.8241 106 166
ID Description Score Start End Superfamily
af_P13445_245_318_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9059 101 166 1.10.10.10
af_L0TCG5_5_78_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.886 11 79 1.10.1740.10
1h3lA00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.879 4 68 1.10.1740.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.872 110 166 1.10.10.10
af_Q9LD95_461_544_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8564 98 169 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7K2NX36-F1-model_v4 RNA polymerase subunit sigma-70 0.9491 186 296 GO:0016987
AF-A0A7X0GMB5-F1-model_v4 Uncharacterized protein 0.9313 199 291 GO:0016987
AF-A0A7K2NX36-F1-model_v4 RNA polymerase subunit sigma-70 0.9251 186 296 GO:0016987
AF-A0A7K2LTP8-F1-model_v4 RNA polymerase subunit sigma-70 0.9072 199 291 GO:0016987
AF-A0A6B2UX92-F1-model_v4 RNA polymerase subunit sigma-70 0.9021 184 293 GO:0016987

Feature Viewer

pLDDT pTM Quality
79.96 0.58 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map