F327529

General Info

Members Datasets Scaffolds Average Seq Length
216 125 432 207

Family's Representative Sequence

Representative Sequence 3300009098|Ga0105245_10054083|Ga0105245_100540832
Length 238
Sequence MRGDSSITERAFGYGRVCPITQGGTSQRGAAVNAPARPAKRGRPGYDLDSLLAVVVTVFNERGYDGTSMEDLSARLGIGKSSIYHHVDGKEELLRLSLDRALDALFAVTEEPAALAGPAIDRLEHLVRRSVQVLAAELPYVTLLLRVRGNTEVEQHALARRREFDRFVGDLVAAAARAGELRADIEPGLISRLLFGTVNSLIEWYRPERGLQPAELADAVVEVVFGGLRTAPGASSGK

Samples

Sample ID Description Type Environment
1 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
31 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
53 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
54 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
55 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
56 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
57 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
58 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
61 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
64 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
65 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
66 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
73 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
74 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
84 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
88 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
94 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
97 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
98 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
108 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
111 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
114 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
115 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
116 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
119 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
120 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
121 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
122 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
123 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
124 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
125 2895427314 Nonomuraea sp. PA05 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.37
Metatranscriptomes 1.85
Isolates 2.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.17
Nodule 0
Rhizoplane 3.24
Rhizosphere 86.57
Stem 0
Stem Tuber 0
Unclassified 0.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105245_10054083 3300009098 Bacteria 3605
2 Ga0070658_10045271 3300005327 Bacteria 3558
3 Ga0070683_100010540 3300005329 Bacteria 7946
4 Ga0070683_100516570 3300005329 Bacteria 1141
5 Ga0070680_100035741 3300005336 Bacteria 4011
6 Ga0070682_100375253 3300005337 Bacteria 1068
7 Ga0070660_100045546 3300005339 Bacteria 3359
8 Ga0070691_10046527 3300005341 Bacteria 2061
9 Ga0070692_10622542 3300005345 Bacteria 717
10 Ga0070713_100373864 3300005436 Bacteria 1326
11 Ga0070710_10070860 3300005437 Bacteria 2009
12 Ga0070663_100047909 3300005455 Bacteria 3028
13 Ga0070663_100133588 3300005455 Bacteria 1887
14 Ga0070663_100269228 3300005455 Bacteria 1354
15 Ga0070698_100538028 3300005471 Bacteria 1107
16 Ga0070679_100217907 3300005530 Bacteria 1870
17 Ga0070679_100398908 3300005530 Bacteria 1321
18 Ga0070679_100516114 3300005530 Bacteria 1139
19 Ga0070684_100068931 3300005535 Bacteria 3110
20 Ga0070693_100541620 3300005547 Bacteria 832
21 Ga0068857_100248658 3300005577 Bacteria 1630
22 Ga0081455_10008614 3300005937 Bacteria 10581
23 Ga0081539_10006617 3300005985 Bacteria 11001
24 Ga0075363_100360426 3300006048 Bacteria 850
25 Ga0075364_10053350 3300006051 Bacteria 2643
26 Ga0075369_10207194 3300006186 Bacteria 906
27 Ga0075370_10093974 3300006353 Bacteria 1731
28 Ga0105243_11278742 3300009148 Bacteria 750
29 Ga0105238_10064450 3300009551 Bacteria 3664
30 Ga0157370_10014603 3300013104 Bacteria 8025
31 Ga0157370_10277366 3300013104 Bacteria 1549
32 Ga0157369_10356359 3300013105 Bacteria 1519
33 Ga0157369_10431294 3300013105 Bacteria 1366
34 Ga0157372_10000222 3300013307 Bacteria 63232
35 Ga0157372_11124421 3300013307 Bacteria 908
36 Ga0206356_10770365 3300020070 Bacteria 3026
37 Ga0206353_11207968 3300020082 Bacteria 1200
38 Ga0213875_10083136 3300021388 Bacteria 1494
39 Ga0224712_10010116 3300022467 Bacteria 2871
40 Ga0224712_10106368 3300022467 Bacteria 1197
41 Ga0207656_10376174 3300025321 Bacteria 712
42 Ga0207692_10049398 3300025898 Bacteria 2123
43 Ga0207692_10282526 3300025898 Bacteria 1005
44 Ga0207699_10249858 3300025906 Bacteria 1222
45 Ga0207699_10255096 3300025906 Bacteria 1210
46 Ga0207705_10076041 3300025909 Bacteria 2440
47 Ga0207705_10218598 3300025909 Bacteria 1447
48 Ga0207707_10040457 3300025912 Bacteria 4071
49 Ga0207707_10311801 3300025912 Bacteria 1359
50 Ga0207695_10084003 3300025913 Bacteria 3215
51 Ga0207693_10111748 3300025915 Bacteria 2143
52 Ga0207663_10285478 3300025916 Bacteria 1227
53 Ga0207660_10497544 3300025917 Bacteria 989
54 Ga0207657_10068995 3300025919 Bacteria 3002
55 Ga0207652_10106638 3300025921 Bacteria 2480
56 Ga0207652_10156797 3300025921 Bacteria 2040
57 Ga0207652_10200398 3300025921 Bacteria 1796
58 Ga0207652_10735620 3300025921 Bacteria 879
59 Ga0207687_10174509 3300025927 Bacteria 1660
60 Ga0207700_10279110 3300025928 Bacteria 1437
61 Ga0207700_10439652 3300025928 Bacteria 1148
62 Ga0207700_10519666 3300025928 Bacteria 1055
63 Ga0207664_10067888 3300025929 Bacteria 2862
64 Ga0207664_10589732 3300025929 Bacteria 998
65 Ga0207665_10169686 3300025939 Bacteria 1575
66 Ga0207661_10112343 3300025944 Bacteria 2306
67 Ga0207678_10008404 3300026067 Bacteria 9105
68 Ga0207678_10148839 3300026067 Bacteria 1999
69 Ga0207702_10362369 3300026078 Bacteria 1390
70 Ga0207674_10126480 3300026116 Bacteria 2521
71 Ga0207698_10038738 3300026142 Bacteria 3525
72 Ga0265337_1004082 3300028556 Bacteria 6145
73 Ga0265326_10014857 3300028558 Bacteria 2264
74 Ga0265319_1012399 3300028563 Bacteria 3448
75 Ga0265334_10009032 3300028573 Bacteria 4226
76 Ga0265318_10016675 3300028577 Bacteria 3029
77 Ga0265322_10007048 3300028654 Bacteria 3296
78 Ga0265336_10003402 3300028666 Bacteria 6240
79 Ga0265338_10005978 3300028800 Bacteria 15653
80 Ga0265338_10030504 3300028800 Bacteria 5310
81 Ga0265324_10001144 3300029957 Bacteria 15878
82 Ga0307511_10000194 3300030521 Bacteria 60345
83 Ga0265332_10008293 3300031238 Bacteria 4668
84 Ga0265320_10100600 3300031240 Bacteria 1331
85 Ga0265325_10113438 3300031241 Bacteria 1314
86 Ga0265340_10014193 3300031247 Bacteria 4168
87 Ga0265339_10054225 3300031249 Bacteria 2178
88 Ga0265316_10056328 3300031344 Bacteria 3071
89 Ga0265313_10013872 3300031595 Bacteria 4801
90 Ga0265314_10011411 3300031711 Bacteria 7338
91 Ga0265342_10071415 3300031712 Bacteria 2022
92 Ga0307405_10286690 3300031731 Bacteria 1242
93 Ga0307413_10130518 3300031824 Bacteria 1719
94 Ga0307413_10436707 3300031824 Bacteria 1035
95 Ga0307413_10468953 3300031824 Bacteria 1004
96 Ga0307410_10015092 3300031852 Bacteria 4571
97 Ga0307410_10058917 3300031852 Bacteria 2620
98 Ga0307410_10172978 3300031852 Bacteria 1629
99 Ga0307410_10457656 3300031852 Bacteria 1042
100 Ga0326468_10018426 3300031889 Bacteria 807
101 Ga0307406_10014342 3300031901 Bacteria 4558
102 Ga0307406_10015656 3300031901 Bacteria 4394
103 Ga0307406_10061310 3300031901 Bacteria 2429
104 Ga0307407_10022645 3300031903 Bacteria 3265
105 Ga0307407_10027135 3300031903 Bacteria 3042
106 Ga0307407_10116115 3300031903 Bacteria 1688
107 Ga0307407_10311536 3300031903 Bacteria 1101
108 Ga0307412_10077687 3300031911 Bacteria 2284
109 Ga0307412_10087499 3300031911 Bacteria 2171
110 Ga0307412_10519504 3300031911 Bacteria 995
111 Ga0307409_100014810 3300031995 Bacteria 5089
112 Ga0307409_100044919 3300031995 Bacteria 3331
113 Ga0307409_100062012 3300031995 Bacteria 2925
114 Ga0307409_100189127 3300031995 Bacteria 1831
115 Ga0307409_100555701 3300031995 Bacteria 1127
116 Ga0307409_100678848 3300031995 Bacteria 1027
117 Ga0307416_100079183 3300032002 Bacteria 2768
118 Ga0307416_100099158 3300032002 Bacteria 2529
119 Ga0307416_100196016 3300032002 Bacteria 1911
120 Ga0307416_100204660 3300032002 Bacteria 1876
121 Ga0307416_100308383 3300032002 Bacteria 1578
122 Ga0307416_100353528 3300032002 Bacteria 1488
123 Ga0307416_100371945 3300032002 Bacteria 1455
124 Ga0307416_100634160 3300032002 Bacteria 1152
125 Ga0307416_101634526 3300032002 Bacteria 749
126 Ga0307414_10155010 3300032004 Bacteria 1812
127 Ga0307414_10383643 3300032004 Bacteria 1216
128 Ga0307414_10859869 3300032004 Bacteria 830
129 Ga0307411_10102355 3300032005 Bacteria 2029
130 Ga0307411_10195401 3300032005 Bacteria 1549
131 Ga0307411_10306041 3300032005 Bacteria 1277
132 Ga0307411_10685756 3300032005 Bacteria 891
133 Ga0307415_100001340 3300032126 Bacteria 11693
134 Ga0307415_100071213 3300032126 Bacteria 2444
135 Ga0307415_100114428 3300032126 Bacteria 2008
136 Ga0307415_100136101 3300032126 Bacteria 1868
137 Ga0316214_1002008 3300033545 Bacteria 2467
138 Ga0373925_0000017 3300037068 Bacteria 174289
139 Ga0373925_0187558 3300037068 Bacteria 1640
140 Ga0395899_0148302 3300037312 Bacteria 1664
141 Ga0395899_0356164 3300037312 Bacteria 978
142 Ga0395900_0010397 3300037418 Bacteria 9515
143 Ga0395900_0384048 3300037418 Bacteria 1372
144 Ga0395898_0005030 3300037466 Bacteria 14337
145 Ga0395898_0029666 3300037466 Bacteria 5475
146 Ga0395898_0240403 3300037466 Bacteria 1727
147 Ga0395898_0858115 3300037466 Bacteria 847
148 Ga0436364_0756258 3300037853 Bacteria 2938
149 Ga0436364_1042615 3300037853 Bacteria 5765
150 Ga0395901_0061908 3300038443 Bacteria 3894
151 Ga0395901_0067005 3300038443 Bacteria 3739
152 Ga0436365_0027162 3300039437 Bacteria 4381
153 Ga0436365_1574386 3300039437 Unclassified 756
154 Ga0436363_0387883 3300039450 Bacteria 643
155 Ga0436362_1138826 3300039453 Unclassified 838
156 Ga0451793_0634350 3300041452 Bacteria 1886
157 Ga0466969_0009413 3300044656 Bacteria 5178
158 Ga0466969_0111058 3300044656 Bacteria 1283
159 Ga0466969_0127830 3300044656 Bacteria 1180
160 Ga0466966_0017223 3300044684 Bacteria 4777
161 Ga0466966_0025757 3300044684 Bacteria 3842
162 Ga0466966_0032137 3300044684 Bacteria 3403
163 Ga0466961_0002976 3300044693 Bacteria 10523
164 Ga0466961_0060965 3300044693 Bacteria 2398
165 Ga0466961_0104251 3300044693 Bacteria 1786
166 Ga0466961_0142100 3300044693 Bacteria 1502
167 Ga0466961_0242328 3300044693 Bacteria 1108
168 Ga0466961_0456104 3300044693 Bacteria 773
169 Ga0466963_0265830 3300044694 Bacteria 1205
170 Ga0466963_0448960 3300044694 Bacteria 910
171 Ga0466971_0072023 3300044719 Bacteria 1570
172 Ga0466971_0093467 3300044719 Bacteria 1378
173 Ga0466971_0104999 3300044719 Bacteria 1301
174 Ga0466968_0100701 3300044735 Bacteria 1290
175 Ga0466970_0031672 3300044765 Bacteria 2793
176 Ga0466970_0113128 3300044765 Bacteria 1483
177 Ga0466970_0123319 3300044765 Bacteria 1420
178 Ga0466957_0229838 3300044842 Bacteria 1228
179 Ga0466957_0382452 3300044842 Bacteria 960
180 Ga0466957_0462601 3300044842 Bacteria 875
181 Ga0466960_0526980 3300044901 Bacteria 695
182 Ga0466959_0064039 3300045049 Bacteria 2669
183 Ga0466959_0100524 3300045049 Bacteria 2070
184 Ga0466959_0216845 3300045049 Bacteria 1328
185 Ga0466958_0043222 3300045836 Bacteria 2713
186 Ga0466958_0167902 3300045836 Bacteria 1389
187 Ga0466958_0302234 3300045836 Bacteria 1027
188 Ga0466967_0022028 3300045976 Bacteria 5190
189 Ga0466967_0088015 3300045976 Bacteria 2817
190 Ga0466967_0434960 3300045976 Bacteria 1280
191 Ga0466967_0474125 3300045976 Bacteria 1225
192 Ga0495613_0254876 3300046689 Bacteria 1224
193 Ga0496108_0366763 3300048911 Bacteria 1257
194 Ga0496109_0193385 3300048912 Bacteria 1912
195 Ga0496112_0323409 3300048915 Bacteria 1487
196 Ga0496112_0663508 3300048915 Bacteria 972
197 Ga0496113_0016067 3300048916 Bacteria 5165
198 Ga0496113_0887749 3300048916 Bacteria 706
199 Ga0496126_0298708 3300048929 Bacteria 1329
200 Ga0501047_0104022 3300049581 Bacteria 2720
201 Ga0501077_0478829 3300049593 Bacteria 798
202 Ga0501081_0423928 3300049743 Bacteria 987
203 nmdc:mga03683_96167_c1 3300050489 Bacteria 1297
204 nmdc:mga03n38_309541_c1 3300050490 Bacteria 850
205 nmdc:mga03n38_82826_c1 3300050490 Bacteria 1511
206 nmdc:mga00v17_255178_c1 3300050491 Bacteria 1137
207 nmdc:mga0sz30_47146_c1 3300050516 Bacteria 1820
208 Ga0466962_0009101 3300061719 Bacteria 4756
209 Ga0466962_0388491 3300061719 Bacteria 698
210 Ga0466962_0440040 3300061719 Bacteria 656
211 2523384336 2523231044 Bacteria 6434991
212 2623501398 2622736605 Bacteria 4992138
213 2644491473 2643221687 Bacteria 6500351
214 2739362805 2738543034 Bacteria 6084756
215 2855390257 2855386786 Bacteria 4752232
216 2895437122 2895427314 Bacteria 13147766
217 Ga0105245_10054083
218 Ga0070658_10045271
219 Ga0070683_100010540
220 Ga0070683_100516570
221 Ga0070680_100035741
222 Ga0070682_100375253
223 Ga0070660_100045546
224 Ga0070691_10046527
225 Ga0070692_10622542
226 Ga0070713_100373864
227 Ga0070710_10070860
228 Ga0070663_100047909
229 Ga0070663_100133588
230 Ga0070663_100269228
231 Ga0070698_100538028
232 Ga0070679_100217907
233 Ga0070679_100398908
234 Ga0070679_100516114
235 Ga0070684_100068931
236 Ga0070693_100541620
237 Ga0068857_100248658
238 Ga0081455_10008614
239 Ga0081539_10006617
240 Ga0075363_100360426
241 Ga0075364_10053350
242 Ga0075369_10207194
243 Ga0075370_10093974
244 Ga0105243_11278742
245 Ga0105238_10064450
246 Ga0157370_10014603
247 Ga0157370_10277366
248 Ga0157369_10356359
249 Ga0157369_10431294
250 Ga0157372_10000222
251 Ga0157372_11124421
252 Ga0206356_10770365
253 Ga0206353_11207968
254 Ga0213875_10083136
255 Ga0224712_10010116
256 Ga0224712_10106368
257 Ga0207656_10376174
258 Ga0207692_10049398
259 Ga0207692_10282526
260 Ga0207699_10249858
261 Ga0207699_10255096
262 Ga0207705_10076041
263 Ga0207705_10218598
264 Ga0207707_10040457
265 Ga0207707_10311801
266 Ga0207695_10084003
267 Ga0207693_10111748
268 Ga0207663_10285478
269 Ga0207660_10497544
270 Ga0207657_10068995
271 Ga0207652_10106638
272 Ga0207652_10156797
273 Ga0207652_10200398
274 Ga0207652_10735620
275 Ga0207687_10174509
276 Ga0207700_10279110
277 Ga0207700_10439652
278 Ga0207700_10519666
279 Ga0207664_10067888
280 Ga0207664_10589732
281 Ga0207665_10169686
282 Ga0207661_10112343
283 Ga0207678_10008404
284 Ga0207678_10148839
285 Ga0207702_10362369
286 Ga0207674_10126480
287 Ga0207698_10038738
288 Ga0265337_1004082
289 Ga0265326_10014857
290 Ga0265319_1012399
291 Ga0265334_10009032
292 Ga0265318_10016675
293 Ga0265322_10007048
294 Ga0265336_10003402
295 Ga0265338_10005978
296 Ga0265338_10030504
297 Ga0265324_10001144
298 Ga0307511_10000194
299 Ga0265332_10008293
300 Ga0265320_10100600
301 Ga0265325_10113438
302 Ga0265340_10014193
303 Ga0265339_10054225
304 Ga0265316_10056328
305 Ga0265313_10013872
306 Ga0265314_10011411
307 Ga0265342_10071415
308 Ga0307405_10286690
309 Ga0307413_10130518
310 Ga0307413_10436707
311 Ga0307413_10468953
312 Ga0307410_10015092
313 Ga0307410_10058917
314 Ga0307410_10172978
315 Ga0307410_10457656
316 Ga0326468_10018426
317 Ga0307406_10014342
318 Ga0307406_10015656
319 Ga0307406_10061310
320 Ga0307407_10022645
321 Ga0307407_10027135
322 Ga0307407_10116115
323 Ga0307407_10311536
324 Ga0307412_10077687
325 Ga0307412_10087499
326 Ga0307412_10519504
327 Ga0307409_100014810
328 Ga0307409_100044919
329 Ga0307409_100062012
330 Ga0307409_100189127
331 Ga0307409_100555701
332 Ga0307409_100678848
333 Ga0307416_100079183
334 Ga0307416_100099158
335 Ga0307416_100196016
336 Ga0307416_100204660
337 Ga0307416_100308383
338 Ga0307416_100353528
339 Ga0307416_100371945
340 Ga0307416_100634160
341 Ga0307416_101634526
342 Ga0307414_10155010
343 Ga0307414_10383643
344 Ga0307414_10859869
345 Ga0307411_10102355
346 Ga0307411_10195401
347 Ga0307411_10306041
348 Ga0307411_10685756
349 Ga0307415_100001340
350 Ga0307415_100071213
351 Ga0307415_100114428
352 Ga0307415_100136101
353 Ga0316214_1002008
354 Ga0373925_0000017
355 Ga0373925_0187558
356 Ga0395899_0148302
357 Ga0395899_0356164
358 Ga0395900_0010397
359 Ga0395900_0384048
360 Ga0395898_0005030
361 Ga0395898_0029666
362 Ga0395898_0240403
363 Ga0395898_0858115
364 Ga0436364_0756258
365 Ga0436364_1042615
366 Ga0395901_0061908
367 Ga0395901_0067005
368 Ga0436365_0027162
369 Ga0436365_1574386
370 Ga0436363_0387883
371 Ga0436362_1138826
372 Ga0451793_0634350
373 Ga0466969_0009413
374 Ga0466969_0111058
375 Ga0466969_0127830
376 Ga0466966_0017223
377 Ga0466966_0025757
378 Ga0466966_0032137
379 Ga0466961_0002976
380 Ga0466961_0060965
381 Ga0466961_0104251
382 Ga0466961_0142100
383 Ga0466961_0242328
384 Ga0466961_0456104
385 Ga0466963_0265830
386 Ga0466963_0448960
387 Ga0466971_0072023
388 Ga0466971_0093467
389 Ga0466971_0104999
390 Ga0466968_0100701
391 Ga0466970_0031672
392 Ga0466970_0113128
393 Ga0466970_0123319
394 Ga0466957_0229838
395 Ga0466957_0382452
396 Ga0466957_0462601
397 Ga0466960_0526980
398 Ga0466959_0064039
399 Ga0466959_0100524
400 Ga0466959_0216845
401 Ga0466958_0043222
402 Ga0466958_0167902
403 Ga0466958_0302234
404 Ga0466967_0022028
405 Ga0466967_0088015
406 Ga0466967_0434960
407 Ga0466967_0474125
408 Ga0495613_0254876
409 Ga0496108_0366763
410 Ga0496109_0193385
411 Ga0496112_0323409
412 Ga0496112_0663508
413 Ga0496113_0016067
414 Ga0496113_0887749
415 Ga0496126_0298708
416 Ga0501047_0104022
417 Ga0501077_0478829
418 Ga0501081_0423928
419 nmdc:mga03683_96167_c1
420 nmdc:mga03n38_309541_c1
421 nmdc:mga03n38_82826_c1
422 nmdc:mga00v17_255178_c1
423 nmdc:mga0sz30_47146_c1
424 Ga0466962_0009101
425 Ga0466962_0388491
426 Ga0466962_0440040
427 2523384336
428 2623501398
429 2644491473
430 2739362805
431 2855390257
432 2895437122

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17932

TetR_C_24

Tetracyclin repressor-like, C-terminal domain

116

228

0.97

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

51

96

0.92

PF21597

TetR_C_43

Transcriptional regulator SbtR-like, C-terminal domain

119

230

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
2iai-assembly1.cif.gz_A-2 crystal structure of sco3833, a member of the tetr transcriptional regulator family from streptomyces coelicolor a3 0.9156 29 211
4w97-assembly1.cif.gz_A structure of ketosteroid transcriptional regulator kstr2 of mycobacterium tuberculosis 0.8986 26 212
2ibd-assembly1.cif.gz_B crystal structure of probable transcriptional regulatory protein rha5900 0.8985 30 212
2ibd-assembly1.cif.gz_B crystal structure of probable transcriptional regulatory protein rha5900 0.8718 30 212
4w97-assembly1.cif.gz_A structure of ketosteroid transcriptional regulator kstr2 of mycobacterium tuberculosis 0.8557 26 212
ID Description Score Start End Superfamily
3whbA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9507 32 70 1.10.10.60
5ojxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9466 29 80 1.10.10.60
3whcE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9462 32 65 1.10.10.60
3whcD01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9459 32 70 1.10.10.60
2eh3A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9459 30 74 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A8A3QWD4-F1-model_v4 deleted 0.9483 27 213
AF-A0A7Y5ZGX9-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9364 11 204 GO:0000976
GO:0003700
AF-A0A5N0V891-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9363 15 207 GO:0000976
GO:0003700
AF-A0A8A3QWD4-F1-model_v4 deleted 0.9199 27 213
AF-A0A7Y5ZGX9-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9174 11 204 GO:0000976
GO:0003700

Map