F326981

General Info

Members Datasets Scaffolds Average Seq Length
215 141 211 305

Family's Representative Sequence

Representative Sequence 3300050512|nmdc:mga0n895_287988_c1|nmdc:mga0n895_287988_c1_196_1203
Length 335
Sequence MGEIMELRHLRYFVAVAEEGSLTVAAERRLHTAQPSLSRQMRDLEYEVGTQLMVRSARGIELTAAGRVFLDHARLALIQVEAAREASRRAAEPTKPSFALGFLTGQEMDWLPEAMRILHDELPNMQVTISSQYSPDLADALMRGKLDVAFMRPEARASDLTYRLVRKEPLVAVLPSDHRLASREAIDAREIAGETFISVSHTAPTLRIVIDDYLKRIGLDIRPDHEVDNIAMAMSLVASTRGVALLPAYVRNFMPWSVISRPIMGDPPTIDLVIGYSKANASPTLKLFLSRADELIGRVSKRLSDPADESDRKGGKPAGNTGEKSAVNVERNEEL

Samples

Sample ID Description Type Environment
1 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
2 2937822353 Mesorhizobium neociceri CCANP35 Isolate Nodule
3 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
41 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
42 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
57 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
81 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
82 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
83 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
84 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
85 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
86 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
87 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
88 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
89 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
90 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
91 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
92 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
93 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
94 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
95 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
96 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
97 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
98 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
99 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
100 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
101 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
102 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
103 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
104 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
105 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
106 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
107 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
108 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
109 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
110 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
111 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
112 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
113 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
114 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
119 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
122 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
123 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
124 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
129 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
130 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
131 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
134 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
135 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
136 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
137 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
138 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
139 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
140 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
141 637000159 Mesorhizobium japonicum MAFF 303099 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.14
Metatranscriptomes 0
Isolates 1.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.19
Nodule 1.4
Rhizoplane 4.19
Rhizosphere 84.19
Stem 0
Stem Tuber 0
Unclassified 6.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25157J39369_1001254 3300002741 Bacteria 10426
2 Ga0065704_10213657 3300005289 Bacteria 1099
3 Ga0065707_10047152 3300005295 Bacteria 1072
4 Ga0068869_100018611 3300005334 Bacteria 4731
5 Ga0068868_100399007 3300005338 Bacteria 1186
6 Ga0070668_100076969 3300005347 Bacteria 2607
7 Ga0070667_100233686 3300005367 Bacteria 1640
8 Ga0070703_10024075 3300005406 Bacteria 1797
9 Ga0070709_10003840 3300005434 Bacteria 8090
10 Ga0070714_100322525 3300005435 Bacteria 1445
11 Ga0070713_100072762 3300005436 Bacteria 2908
12 Ga0070711_100054861 3300005439 Bacteria 2751
13 Ga0070711_100212210 3300005439 Bacteria 1500
14 Ga0070705_100219802 3300005440 Bacteria 1315
15 Ga0070700_100001539 3300005441 Bacteria 11493
16 Ga0070708_100049790 3300005445 Bacteria 3707
17 Ga0070708_100068258 3300005445 Bacteria 3195
18 Ga0070663_100307471 3300005455 Bacteria 1271
19 Ga0070706_100403321 3300005467 Bacteria 1273
20 Ga0070707_100437210 3300005468 Bacteria 1269
21 Ga0070698_100094875 3300005471 Bacteria 2962
22 Ga0070699_100033807 3300005518 Bacteria 4418
23 Ga0070699_100058590 3300005518 Bacteria 3336
24 Ga0070699_100059032 3300005518 Bacteria 3324
25 Ga0070696_100025713 3300005546 Bacteria 4004
26 Ga0070696_100036404 3300005546 Bacteria 3393
27 Ga0070704_100373874 3300005549 Bacteria 1209
28 Ga0068855_100229970 3300005563 Bacteria 2077
29 Ga0068859_100248550 3300005617 Bacteria 1869
30 Ga0068861_100045234 3300005719 Bacteria 3314
31 Ga0068861_100104035 3300005719 Bacteria 2264
32 Ga0068860_100105902 3300005843 Bacteria 2686
33 Ga0068862_100170318 3300005844 Bacteria 1949
34 Ga0070715_10125356 3300006163 Bacteria 1229
35 Ga0070712_100023680 3300006175 Bacteria 4060
36 Ga0070712_100058945 3300006175 Bacteria 2702
37 Ga0070712_100254473 3300006175 Bacteria 1405
38 Ga0075428_100003769 3300006844 Bacteria 16611
39 Ga0075428_100214191 3300006844 Bacteria 2081
40 Ga0075431_100011852 3300006847 Bacteria 8797
41 Ga0075431_100019596 3300006847 Bacteria 6901
42 Ga0075433_10003404 3300006852 Bacteria 12284
43 Ga0075433_10006366 3300006852 Bacteria 9334
44 Ga0075433_10036063 3300006852 Bacteria 4257
45 Ga0075433_10037415 3300006852 Bacteria 4187
46 Ga0075433_10117171 3300006852 Bacteria 2363
47 Ga0075433_10180898 3300006852 Bacteria 1876
48 Ga0075434_100007777 3300006871 Bacteria 9923
49 Ga0075434_100011630 3300006871 Bacteria 8312
50 Ga0075434_100050589 3300006871 Bacteria 4128
51 Ga0075434_100315650 3300006871 Bacteria 1583
52 Ga0075429_100003685 3300006880 Bacteria 13053
53 Ga0075436_100085434 3300006914 Bacteria 2190
54 Ga0075436_100227749 3300006914 Bacteria 1324
55 Ga0097620_100248555 3300006931 Bacteria 1869
56 Ga0075435_100004801 3300007076 Bacteria 9347
57 Ga0075435_100017135 3300007076 Bacteria 5476
58 Ga0075435_100032309 3300007076 Bacteria 4132
59 Ga0075435_100044537 3300007076 Bacteria 3554
60 Ga0099794_10054926 3300007265 Bacteria 1924
61 Ga0099794_10132466 3300007265 Bacteria 1259
62 Ga0099795_10023222 3300007788 Bacteria 2056
63 Ga0099795_10026351 3300007788 Bacteria 1958
64 Ga0099795_10028810 3300007788 Bacteria 1892
65 Ga0105250_10010520 3300009092 Bacteria 3854
66 Ga0111539_10015136 3300009094 Bacteria 9612
67 Ga0111539_10016441 3300009094 Bacteria 9174
68 Ga0111539_10452843 3300009094 Bacteria 1494
69 Ga0114129_10005061 3300009147 Bacteria 18552
70 Ga0114129_10033367 3300009147 Bacteria 7274
71 Ga0114129_10545383 3300009147 Bacteria 1509
72 Ga0105242_10373425 3300009176 Bacteria 1323
73 Ga0105237_10322747 3300009545 Bacteria 1548
74 Ga0105249_10038791 3300009553 Bacteria 4322
75 Ga0105249_10177086 3300009553 Bacteria 2072
76 Ga0099796_10000697 3300010159 Bacteria 5929
77 Ga0099796_10060091 3300010159 Bacteria 1344
78 Ga0099796_10070156 3300010159 Bacteria 1263
79 Ga0105239_10097082 3300010375 Bacteria 3256
80 Ga0105246_10159296 3300011119 Bacteria 1718
81 Ga0157374_10104845 3300013296 Bacteria 2715
82 Ga0163162_10038837 3300013306 Bacteria 4752
83 Ga0157375_10485243 3300013308 Bacteria 1401
84 Ga0157379_10001728 3300014968 Bacteria 18073
85 Ga0209026_1000041 3300025250 Bacteria 275745
86 Ga0209759_1000280 3300025256 Bacteria 71873
87 Ga0207653_10021785 3300025885 Bacteria 2033
88 Ga0207692_10022410 3300025898 Bacteria 2906
89 Ga0207699_10019676 3300025906 Bacteria 3605
90 Ga0207684_10001545 3300025910 Bacteria 24619
91 Ga0207693_10032499 3300025915 Bacteria 4119
92 Ga0207663_10207773 3300025916 Bacteria 1417
93 Ga0207646_10013393 3300025922 Bacteria 7847
94 Ga0207646_10085012 3300025922 Bacteria 2830
95 Ga0207646_10100271 3300025922 Bacteria 2596
96 Ga0207681_10035658 3300025923 Bacteria 3279
97 Ga0207687_10134542 3300025927 Bacteria 1868
98 Ga0207700_10064234 3300025928 Bacteria 2795
99 Ga0207670_10091351 3300025936 Bacteria 2153
100 Ga0207689_10011121 3300025942 Bacteria 7727
101 Ga0207712_10136086 3300025961 Bacteria 1879
102 Ga0207712_10388348 3300025961 Bacteria 1170
103 Ga0207668_10021448 3300025972 Bacteria 4119
104 Ga0207668_10287128 3300025972 Bacteria 1352
105 Ga0207678_10263648 3300026067 Bacteria 1477
106 Ga0207708_10036361 3300026075 Bacteria 3749
107 Ga0207708_10353383 3300026075 Bacteria 1206
108 Ga0207641_10398154 3300026088 Bacteria 1322
109 Ga0207675_100003447 3300026118 Bacteria 15462
110 Ga0207675_100053441 3300026118 Bacteria 3769
111 Ga0207683_10176698 3300026121 Bacteria 1935
112 Ga0209179_1019594 3300027512 Bacteria 1305
113 Ga0209588_1016883 3300027671 Bacteria 2258
114 Ga0209588_1017975 3300027671 Bacteria 2198
115 Ga0209588_1055921 3300027671 Bacteria 1276
116 Ga0207428_10010840 3300027907 Bacteria 8121
117 Ga0268265_10032094 3300028380 Bacteria 3800
118 Ga0265338_10001143 3300028800 Bacteria 43898
119 Ga0265325_10000003 3300031241 Bacteria 370490
120 Ga0265339_10001445 3300031249 Bacteria 17619
121 Ga0265331_10004643 3300031250 Bacteria 8517
122 Ga0265327_10000194 3300031251 Bacteria 129264
123 Ga0265316_10105009 3300031344 Bacteria 2144
124 Ga0265313_10002034 3300031595 Bacteria 18144
125 Ga0265342_10002356 3300031712 Bacteria 16385
126 Ga0307510_10008632 3300033180 Bacteria 12144
127 Ga0373929_0003132 3300035085 Bacteria 3005
128 Ga0373949_0042282 3300035090 Bacteria 1124
129 Ga0373939_0064332 3300035114 Bacteria 1177
130 Ga0373941_0041756 3300035115 Bacteria 1421
131 Ga0373961_0005480 3300035241 Bacteria 3048
132 Ga0373962_0005665 3300035242 Bacteria 3015
133 Ga0373931_0003658 3300035691 Bacteria 6951
134 Ga0373931_0072500 3300035691 Bacteria 1883
135 Ga0373931_0105288 3300035691 Bacteria 1593
136 Ga0436364_0739869 3300037853 Bacteria 1930
137 Ga0436365_1440122 3300039437 Bacteria 4102
138 Ga0436360_0859917 3300039438 Bacteria 4632
139 Ga0436361_0767353 3300039447 Bacteria 3694
140 Ga0453683_0034690 3300044673 Bacteria 3180
141 Ga0495605_0007926 3300046474 Bacteria 6016
142 Ga0495605_0046371 3300046474 Bacteria 2137
143 Ga0495631_0004306 3300046518 Bacteria 7593
144 Ga0495663_0033126 3300046525 Bacteria 1542
145 Ga0495642_0052767 3300046528 Bacteria 1675
146 Ga0495640_0138674 3300046533 Bacteria 1569
147 Ga0495621_0064918 3300046539 Bacteria 1333
148 Ga0495656_0001516 3300046615 Bacteria 7595
149 Ga0495611_0148224 3300046648 Bacteria 1095
150 Ga0495669_0127134 3300046684 Bacteria 1198
151 Ga0495670_0158029 3300046691 Bacteria 1190
152 Ga0495589_0163135 3300046794 Bacteria 1061
153 Ga0495581_0105878 3300047315 Bacteria 1635
154 Ga0495672_0034300 3300047320 Bacteria 3137
155 Ga0495615_0016826 3300048090 Bacteria 1584
156 Ga0496102_0002664 3300048905 Bacteria 15188
157 Ga0496103_0022859 3300048906 Bacteria 3767
158 Ga0496104_0012303 3300048907 Bacteria 7693
159 Ga0496106_0033813 3300048909 Bacteria 3816
160 Ga0496109_0012471 3300048912 Bacteria 7338
161 Ga0496112_0022078 3300048915 Bacteria 6061
162 Ga0496113_0000584 3300048916 Bacteria 18163
163 Ga0496113_0213312 3300048916 Bacteria 1537
164 Ga0496115_0026089 3300048918 Bacteria 4557
165 Ga0496119_0000709 3300048922 Bacteria 44727
166 Ga0496119_0078510 3300048922 Bacteria 1909
167 Ga0496126_0000727 3300048929 Bacteria 59803
168 Ga0496126_0005967 3300048929 Bacteria 13696
169 Ga0496126_0031465 3300048929 Bacteria 5013
170 Ga0496126_0054715 3300048929 Plasmid 3613
171 nmdc:mga05p37_50964_c1 3300050507 Bacteria 5091
172 nmdc:mga05p37_9211_c1 3300050507 Bacteria 11669
173 nmdc:mga09592_183761_c1 3300050508 Bacteria 1809
174 nmdc:mga09592_4932_c1 3300050508 Bacteria 10819
175 nmdc:mga06r32_10011_c1 3300050510 Bacteria 8554
176 nmdc:mga06r32_31243_c1 3300050510 Bacteria 5000
177 nmdc:mga06r32_461799_c1 3300050510 Bacteria 1249
178 nmdc:mga08y16_11344_c1 3300050511 Bacteria 9361
179 nmdc:mga08y16_302128_c1 3300050511 Bacteria 1650
180 nmdc:mga08y16_33283_c1 3300050511 Bacteria 5413
181 nmdc:mga08y16_426961_c1 3300050511 Unclassified 1354
182 nmdc:mga0n895_1626_c1 3300050512 Bacteria 16962
183 nmdc:mga0n895_228536_c1 3300050512 Bacteria 1889
184 nmdc:mga0n895_287988_c1 3300050512 Bacteria 1665
185 nmdc:mga0n895_34974_c1 3300050512 Bacteria 4840
186 nmdc:mga0n895_41629_c1 3300050512 Bacteria 4467
187 nmdc:mga0n895_5608_c1 3300050512 Bacteria 10512
188 nmdc:mga0rr50_101662_c1 3300050513 Unclassified 2260
189 nmdc:mga0rr50_105212_c1 3300050513 Bacteria 2225
190 nmdc:mga0rr50_11246_c1 3300050513 Bacteria 5717
191 nmdc:mga0rr50_21438_c1 3300050513 Bacteria 4411
192 nmdc:mga0rr50_26339_c1 3300050513 Bacteria 4055
193 nmdc:mga08x19_110071_c1 3300050514 Bacteria 1836
194 nmdc:mga08x19_194368_c1 3300050514 Bacteria 1389
195 nmdc:mga08x19_79864_c1 3300050514 Bacteria 2146
196 nmdc:mga0a205_13002_c1 3300050515 Bacteria 7726
197 nmdc:mga0a205_18301_c1 3300050515 Bacteria 6585
198 nmdc:mga0a205_21013_c1 3300050515 Bacteria 6170
199 nmdc:mga0a205_39221_c1 3300050515 Bacteria 4559
200 nmdc:mga0a205_84829_c1 3300050515 Bacteria 3060
201 nmdc:mga0a205_87277_c1 3300050515 Bacteria 3014
202 nmdc:mga0a205_9528_c1 3300050515 Bacteria 8884
203 Ga0500610_0033413 3300053079 Bacteria 2625
204 Ga0500651_0009653 3300053093 Bacteria 5748
205 Ga0500557_000211 3300053105 Bacteria 9409
206 Ga0500594_0005272 3300053118 Bacteria 2865
207 Ga0500594_0011031 3300053118 Bacteria 2107
208 Ga0500568_0064846 3300053139 Bacteria 1407
209 Ga0500588_0074032 3300053146 Bacteria 1124
210 Ga0500622_0051300 3300053156 Bacteria 2124
211 Ga0500570_034174 3300053724 Bacteria 2719

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10452843 Ga0111539_104528432 280
2 3300050511 nmdc:mga08y16_426961_c1 nmdc:mga08y16_426961_c1_293_1195 280
3 3300050515 nmdc:mga0a205_84829_c1 nmdc:mga0a205_84829_c1_109_1011 280
4 3300050515 nmdc:mga0a205_13002_c1 nmdc:mga0a205_13002_c1_1924_2826 281
5 3300046648 Ga0495611_0148224 Ga0495611_0148224_211_1068 285
6 3300053724 Ga0500570_034174 Ga0500570_034174_1481_2392 290
7 3300039437 Ga0436365_1440122 Ga0436365_1440122_2605_3504 291
8 3300048929 Ga0496126_0005967 Ga0496126_0005967_1705_2610 292
9 iso_pu_bacteria 2937822353 2937822615 294
10 3300009147 Ga0114129_10005061 Ga0114129_1000506118 295
11 3300050507 nmdc:mga05p37_9211_c1 nmdc:mga05p37_9211_c1_5453_6355 295
12 3300005445 Ga0070708_100068258 Ga0070708_1000682581 296
13 3300006847 Ga0075431_100011852 Ga0075431_10001185210 296
14 3300050510 nmdc:mga06r32_10011_c1 nmdc:mga06r32_10011_c1_5463_6395 296
15 iso_pu_bacteria 2937822353 2937827592 296
16 3300005546 Ga0070696_100036404 Ga0070696_1000364042 297
17 3300007788 Ga0099795_10026351 Ga0099795_100263511 297
18 3300046474 Ga0495605_0046371 Ga0495605_0046371_189_1121 297
19 3300048929 Ga0496126_0000727 Ga0496126_0000727_57218_58111 297
20 3300005434 Ga0070709_10003840 Ga0070709_100038409 298
21 3300005435 Ga0070714_100322525 Ga0070714_1003225252 298
22 3300005436 Ga0070713_100072762 Ga0070713_1000727622 298
23 3300005439 Ga0070711_100054861 Ga0070711_1000548612 298
24 3300006163 Ga0070715_10125356 Ga0070715_101253562 298
25 3300006175 Ga0070712_100023680 Ga0070712_1000236805 298
26 3300006175 Ga0070712_100254473 Ga0070712_1002544732 298
27 3300025898 Ga0207692_10022410 Ga0207692_100224104 298
28 3300025906 Ga0207699_10019676 Ga0207699_100196763 298
29 3300025915 Ga0207693_10032499 Ga0207693_100324995 298
30 3300025928 Ga0207700_10064234 Ga0207700_100642342 298
31 3300048929 Ga0496126_0031465 Ga0496126_0031465_217_1143 298
32 3300005471 Ga0070698_100094875 Ga0070698_1000948753 299
33 3300006852 Ga0075433_10117171 Ga0075433_101171712 299
34 3300006871 Ga0075434_100050589 Ga0075434_1000505894 299
35 3300007076 Ga0075435_100044537 Ga0075435_1000445373 299
36 3300007265 Ga0099794_10132466 Ga0099794_101324662 299
37 3300009094 Ga0111539_10016441 Ga0111539_100164416 299
38 3300009545 Ga0105237_10322747 Ga0105237_103227472 299
39 3300025922 Ga0207646_10100271 Ga0207646_101002712 299
40 3300025927 Ga0207687_10134542 Ga0207687_101345422 299
41 3300026121 Ga0207683_10176698 Ga0207683_101766982 299
42 3300033180 Ga0307510_10008632 Ga0307510_1000863211 299
43 3300039438 Ga0436360_0859917 Ga0436360_0859917_1022_1921 299
44 3300039447 Ga0436361_0767353 Ga0436361_0767353_774_1673 299
45 3300048922 Ga0496119_0078510 Ga0496119_0078510_581_1480 299
46 3300048929 Ga0496126_0054715 Ga0496126_0054715_2230_3177 299
47 3300050511 nmdc:mga08y16_33283_c1 nmdc:mga08y16_33283_c1_483_1382 299
48 3300050512 nmdc:mga0n895_34974_c1 nmdc:mga0n895_34974_c1_3473_4372 299
49 3300050513 nmdc:mga0rr50_21438_c1 nmdc:mga0rr50_21438_c1_508_1407 299
50 3300050515 nmdc:mga0a205_87277_c1 nmdc:mga0a205_87277_c1_1613_2512 299
51 3300053093 Ga0500651_0009653 Ga0500651_0009653_3831_4730 299
52 3300053118 Ga0500594_0011031 Ga0500594_0011031_1011_1910 299
53 3300053156 Ga0500622_0051300 Ga0500622_0051300_485_1384 299
54 3300005439 Ga0070711_100212210 Ga0070711_1002122101 300
55 3300005518 Ga0070699_100059032 Ga0070699_1000590322 300
56 3300005843 Ga0068860_100105902 Ga0068860_1001059023 300
57 3300006844 Ga0075428_100214191 Ga0075428_1002141911 300
58 3300006847 Ga0075431_100019596 Ga0075431_1000195965 300
59 3300006852 Ga0075433_10003404 Ga0075433_100034043 300
60 3300006871 Ga0075434_100007777 Ga0075434_1000077778 300
61 3300006880 Ga0075429_100003685 Ga0075429_1000036852 300
62 3300006914 Ga0075436_100085434 Ga0075436_1000854342 300
63 3300007076 Ga0075435_100017135 Ga0075435_1000171352 300
64 3300007076 Ga0075435_100032309 Ga0075435_1000323092 300
65 3300009094 Ga0111539_10015136 Ga0111539_1001513610 300
66 3300009147 Ga0114129_10033367 Ga0114129_100333675 300
67 3300009147 Ga0114129_10545383 Ga0114129_105453831 300
68 3300013306 Ga0163162_10038837 Ga0163162_100388376 300
69 3300025910 Ga0207684_10001545 Ga0207684_1000154519 300
70 3300025916 Ga0207663_10207773 Ga0207663_102077732 300
71 3300025922 Ga0207646_10085012 Ga0207646_100850122 300
72 3300025936 Ga0207670_10091351 Ga0207670_100913513 300
73 3300027907 Ga0207428_10010840 Ga0207428_100108408 300
74 3300028800 Ga0265338_10001143 Ga0265338_1000114318 300
75 3300031241 Ga0265325_10000003 Ga0265325_10000003268 300
76 3300031249 Ga0265339_10001445 Ga0265339_100014453 300
77 3300031250 Ga0265331_10004643 Ga0265331_100046435 300
78 3300031344 Ga0265316_10105009 Ga0265316_101050092 300
79 3300031595 Ga0265313_10002034 Ga0265313_1000203417 300
80 3300031712 Ga0265342_10002356 Ga0265342_100023562 300
81 3300035691 Ga0373931_0105288 Ga0373931_0105288_54_956 300
82 3300046528 Ga0495642_0052767 Ga0495642_0052767_549_1451 300
83 3300046684 Ga0495669_0127134 Ga0495669_0127134_159_1061 300
84 3300050507 nmdc:mga05p37_50964_c1 nmdc:mga05p37_50964_c1_3958_4860 300
85 3300050508 nmdc:mga09592_4932_c1 nmdc:mga09592_4932_c1_3679_4581 300
86 3300050510 nmdc:mga06r32_31243_c1 nmdc:mga06r32_31243_c1_3952_4854 300
87 3300050511 nmdc:mga08y16_11344_c1 nmdc:mga08y16_11344_c1_7033_7935 300
88 3300050512 nmdc:mga0n895_228536_c1 nmdc:mga0n895_228536_c1_209_1111 300
89 3300050512 nmdc:mga0n895_5608_c1 nmdc:mga0n895_5608_c1_7653_8555 300
90 3300050513 nmdc:mga0rr50_101662_c1 nmdc:mga0rr50_101662_c1_1163_2077 300
91 3300050513 nmdc:mga0rr50_105212_c1 nmdc:mga0rr50_105212_c1_540_1442 300
92 3300050513 nmdc:mga0rr50_26339_c1 nmdc:mga0rr50_26339_c1_1320_2222 300
93 3300050514 nmdc:mga08x19_79864_c1 nmdc:mga08x19_79864_c1_609_1511 300
94 3300050515 nmdc:mga0a205_9528_c1 nmdc:mga0a205_9528_c1_3698_4600 300
95 3300005440 Ga0070705_100219802 Ga0070705_1002198021 301
96 3300005518 Ga0070699_100033807 Ga0070699_1000338074 301
97 3300005546 Ga0070696_100025713 Ga0070696_1000257131 301
98 3300014968 Ga0157379_10001728 Ga0157379_100017289 301
99 3300048922 Ga0496119_0000709 Ga0496119_0000709_42762_43676 301
100 3300048918 Ga0496115_0026089 Ga0496115_0026089_3162_4070 302
101 3300005289 Ga0065704_10213657 Ga0065704_102136571 303
102 3300005295 Ga0065707_10047152 Ga0065707_100471521 303
103 3300005334 Ga0068869_100018611 Ga0068869_1000186114 303
104 3300005338 Ga0068868_100399007 Ga0068868_1003990071 303
105 3300005347 Ga0070668_100076969 Ga0070668_1000769693 303
106 3300005367 Ga0070667_100233686 Ga0070667_1002336861 303
107 3300005549 Ga0070704_100373874 Ga0070704_1003738741 303
108 3300005719 Ga0068861_100104035 Ga0068861_1001040353 303
109 3300005844 Ga0068862_100170318 Ga0068862_1001703181 303
110 3300006871 Ga0075434_100011630 Ga0075434_1000116304 303
111 3300007076 Ga0075435_100004801 Ga0075435_1000048016 303
112 3300007265 Ga0099794_10054926 Ga0099794_100549263 303
113 3300009092 Ga0105250_10010520 Ga0105250_100105201 303
114 3300009553 Ga0105249_10038791 Ga0105249_100387913 303
115 3300013296 Ga0157374_10104845 Ga0157374_101048454 303
116 3300013308 Ga0157375_10485243 Ga0157375_104852431 303
117 3300025923 Ga0207681_10035658 Ga0207681_100356581 303
118 3300025942 Ga0207689_10011121 Ga0207689_100111215 303
119 3300025961 Ga0207712_10136086 Ga0207712_101360862 303
120 3300025972 Ga0207668_10021448 Ga0207668_100214485 303
121 3300026075 Ga0207708_10353383 Ga0207708_103533831 303
122 3300026088 Ga0207641_10398154 Ga0207641_103981541 303
123 3300026118 Ga0207675_100003447 Ga0207675_10000344718 303
124 3300027671 Ga0209588_1016883 Ga0209588_10168832 303
125 3300028380 Ga0268265_10032094 Ga0268265_100320943 303
126 3300044673 Ga0453683_0034690 Ga0453683_0034690_570_1505 303
127 3300046525 Ga0495663_0033126 Ga0495663_0033126_452_1363 303
128 3300046539 Ga0495621_0064918 Ga0495621_0064918_358_1281 303
129 3300046615 Ga0495656_0001516 Ga0495656_0001516_2313_3224 303
130 3300046691 Ga0495670_0158029 Ga0495670_0158029_241_1164 303
131 3300046794 Ga0495589_0163135 Ga0495589_0163135_113_1024 303
132 3300047315 Ga0495581_0105878 Ga0495581_0105878_13_936 303
133 3300047320 Ga0495672_0034300 Ga0495672_0034300_691_1602 303
134 3300048090 Ga0495615_0016826 Ga0495615_0016826_397_1320 303
135 3300050513 nmdc:mga0rr50_11246_c1 nmdc:mga0rr50_11246_c1_3470_4393 303
136 3300053146 Ga0500588_0074032 Ga0500588_0074032_87_1010 303
137 3300005445 Ga0070708_100049790 Ga0070708_1000497903 304
138 3300005518 Ga0070699_100058590 Ga0070699_1000585902 304
139 3300010159 Ga0099796_10060091 Ga0099796_100600912 304
140 3300025922 Ga0207646_10013393 Ga0207646_100133932 304
141 3300027671 Ga0209588_1017975 Ga0209588_10179753 304
142 3300027671 Ga0209588_1055921 Ga0209588_10559212 304
143 3300007788 Ga0099795_10023222 Ga0099795_100232222 305
144 3300025885 Ga0207653_10021785 Ga0207653_100217852 305
145 3300027512 Ga0209179_1019594 Ga0209179_10195941 305
146 3300048916 Ga0496113_0213312 Ga0496113_0213312_386_1333 305
147 3300050514 nmdc:mga08x19_194368_c1 nmdc:mga08x19_194368_c1_106_1044 305
148 3300053139 Ga0500568_0064846 Ga0500568_0064846_450_1367 305
149 3300031251 Ga0265327_10000194 Ga0265327_1000019425 306
150 iso_pu_bacteria 2874168670 2874174257 306
151 3300046474 Ga0495605_0007926 Ga0495605_0007926_4008_4931 307
152 3300046518 Ga0495631_0004306 Ga0495631_0004306_4673_5596 307
153 3300053079 Ga0500610_0033413 Ga0500610_0033413_1469_2392 307
154 3300053105 Ga0500557_000211 Ga0500557_000211_2720_3643 307
155 3300053118 Ga0500594_0005272 Ga0500594_0005272_1217_2140 307
156 3300007788 Ga0099795_10028810 Ga0099795_100288102 308
157 3300010159 Ga0099796_10070156 Ga0099796_100701561 308
158 iso_pu_bacteria 637000159 637078915 308
159 3300006175 Ga0070712_100058945 Ga0070712_1000589454 309
160 3300006852 Ga0075433_10006366 Ga0075433_100063665 309
161 3300035085 Ga0373929_0003132 Ga0373929_0003132_984_1925 309
162 3300035090 Ga0373949_0042282 Ga0373949_0042282_142_1083 309
163 3300035114 Ga0373939_0064332 Ga0373939_0064332_97_1038 309
164 3300035115 Ga0373941_0041756 Ga0373941_0041756_130_1071 309
165 3300035241 Ga0373961_0005480 Ga0373961_0005480_669_1610 309
166 3300035242 Ga0373962_0005665 Ga0373962_0005665_1942_2883 309
167 3300035691 Ga0373931_0003658 Ga0373931_0003658_5705_6646 309
168 3300050512 nmdc:mga0n895_1626_c1 nmdc:mga0n895_1626_c1_13363_14304 309
169 3300050515 nmdc:mga0a205_39221_c1 nmdc:mga0a205_39221_c1_1267_2208 309
170 3300005455 Ga0070663_100307471 Ga0070663_1003074711 310
171 3300005467 Ga0070706_100403321 Ga0070706_1004033211 310
172 3300005563 Ga0068855_100229970 Ga0068855_1002299701 310
173 3300005617 Ga0068859_100248550 Ga0068859_1002485501 310
174 3300006844 Ga0075428_100003769 Ga0075428_10000376916 310
175 3300006852 Ga0075433_10036063 Ga0075433_100360632 310
176 3300006852 Ga0075433_10180898 Ga0075433_101808982 310
177 3300006871 Ga0075434_100315650 Ga0075434_1003156502 310
178 3300006914 Ga0075436_100227749 Ga0075436_1002277491 310
179 3300006931 Ga0097620_100248555 Ga0097620_1002485552 310
180 3300009176 Ga0105242_10373425 Ga0105242_103734251 310
181 3300009553 Ga0105249_10177086 Ga0105249_101770862 310
182 3300010375 Ga0105239_10097082 Ga0105239_100970822 310
183 3300011119 Ga0105246_10159296 Ga0105246_101592961 310
184 3300025961 Ga0207712_10388348 Ga0207712_103883481 310
185 3300025972 Ga0207668_10287128 Ga0207668_102871282 310
186 3300026067 Ga0207678_10263648 Ga0207678_102636481 310
187 3300035691 Ga0373931_0072500 Ga0373931_0072500_68_1003 310
188 3300048905 Ga0496102_0002664 Ga0496102_0002664_7683_8618 310
189 3300048906 Ga0496103_0022859 Ga0496103_0022859_982_1917 310
190 3300048907 Ga0496104_0012303 Ga0496104_0012303_5868_6803 310
191 3300048909 Ga0496106_0033813 Ga0496106_0033813_1060_1995 310
192 3300048912 Ga0496109_0012471 Ga0496109_0012471_733_1668 310
193 3300048915 Ga0496112_0022078 Ga0496112_0022078_2131_3066 310
194 3300048916 Ga0496113_0000584 Ga0496113_0000584_1462_2397 310
195 3300050508 nmdc:mga09592_183761_c1 nmdc:mga09592_183761_c1_209_1144 310
196 3300050510 nmdc:mga06r32_461799_c1 nmdc:mga06r32_461799_c1_293_1228 310
197 3300050512 nmdc:mga0n895_287988_c1 nmdc:mga0n895_287988_c1_196_1203 310
198 3300050512 nmdc:mga0n895_41629_c1 nmdc:mga0n895_41629_c1_1236_2171 310
199 3300050514 nmdc:mga08x19_110071_c1 nmdc:mga08x19_110071_c1_279_1214 310
200 3300050515 nmdc:mga0a205_21013_c1 nmdc:mga0a205_21013_c1_1626_2633 310
201 3300005406 Ga0070703_10024075 Ga0070703_100240752 311
202 3300005441 Ga0070700_100001539 Ga0070700_1000015398 311
203 3300005468 Ga0070707_100437210 Ga0070707_1004372102 311
204 3300005719 Ga0068861_100045234 Ga0068861_1000452343 311
205 3300006852 Ga0075433_10037415 Ga0075433_100374151 311
206 3300010159 Ga0099796_10000697 Ga0099796_100006976 311
207 3300026075 Ga0207708_10036361 Ga0207708_100363613 311
208 3300026118 Ga0207675_100053441 Ga0207675_1000534414 311
209 3300050511 nmdc:mga08y16_302128_c1 nmdc:mga08y16_302128_c1_215_1171 311
210 3300050515 nmdc:mga0a205_18301_c1 nmdc:mga0a205_18301_c1_71_1027 311
211 3300037853 Ga0436364_0739869 Ga0436364_0739869_406_1344 312
212 3300046533 Ga0495640_0138674 Ga0495640_0138674_411_1379 315
213 3300002741 JGI25157J39369_1001254 JGI25157J39369_100125416 317
214 3300025250 Ga0209026_1000041 Ga0209026_1000041109 317
215 3300025256 Ga0209759_1000280 Ga0209759_100028047 317

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

7

67

0.96

PF03466

LysR_substrate

LysR substrate binding domain

91

295

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9651 1 88
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9545 1 88
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9457 1 86
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9383 1 88
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.936 1 88
ID Description Score Start End Superfamily
af_P37641_3_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9739 2 80 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9733 1 83 1.10.10.10
af_P9WMF3_10_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9681 4 82 1.10.10.10
1iz1P01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9673 2 88 1.10.10.10
af_P27111_3_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9657 4 84 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6F9E7D7-F1-model_v4 LysR family transcriptional regulator 0.8947 107 300 GO:0003677
GO:0003700
GO:0032993
AF-A0A6F9E7D7-F1-model_v4 LysR family transcriptional regulator 0.8818 107 300 GO:0003677
GO:0003700
GO:0032993
AF-A0A530Y2I8-F1-model_v4 LysR family transcriptional regulator 0.8745 128 273 GO:0005829
GO:0006355
AF-A0A317F9C4-F1-model_v4 LysR substrate-binding domain-containing protein 0.8684 119 293 GO:0003677
GO:0003700
GO:0032993
AF-A0A3T1DZX0-F1-model_v4 deleted 0.867 129 294

Feature Viewer

pLDDT pTM Quality
83.76 0.66 Medium
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Predicted Structure (AlphaFold2)

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