F326697

General Info

Members Datasets Scaffolds Average Seq Length
215 153 430 173

Family's Representative Sequence

Representative Sequence 3300038735|Ga0400485_08999|Ga0400485_08999_20_616
Length 198
Sequence MGKMVKSVADNETPAGTDIQQYLTFHLSGEMYAVGTLSVKEIIEYERLTTVPMMPESIRGVINLRGSVVPVVDLSARFGGKQAEITRRTCIVILEVNTSDEDHVIGVVVDTVSEVLEIAHDEIEPAPSFGAKIRTDFIEGMAKVDDTFVILLDIGQVLSVDEIAAFAEVSENRAAHISHGTSKVEPEIAIQDDILTRP

Samples

Sample ID Description Type Environment
1 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
33 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
34 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
35 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
52 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
53 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
65 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
66 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
67 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
68 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
69 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
70 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
71 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
76 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
81 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
87 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
88 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
89 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
90 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
93 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
94 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
95 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
96 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
111 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
112 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
113 2511231156 Pseudomonas ogarae F113 Isolate Rhizosphere
114 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
115 2599185248 Pseudomonas sp. NFACC08-1 Isolate Rhizoplane
116 2599185289 Pseudomonas sp. NFACC51 Isolate Rhizoplane
117 2599185291 Pseudomonas sp. NFACC48-1 Isolate Rhizoplane
118 2599185302 Pseudomonas sp. NFACC43 Isolate Rhizoplane
119 2599185304 Pseudomonas sp. NFACC47-1 Isolate Rhizoplane
120 2599185305 Pseudomonas sp. NFACC07-1 Isolate Rhizoplane
121 2599185309 Pseudomonas sp. NFACC49-2 Isolate Rhizoplane
122 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
123 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
124 2599185313 Pseudomonas sp. NFACC05-1 Isolate Rhizoplane
125 2599185315 Pseudomonas sp. NFACC44-2 Isolate Rhizoplane
126 2599185317 Pseudomonas sp. NFACC06-1 Isolate Rhizoplane
127 2599185318 Pseudomonas sp. NFACC13-1 Isolate Rhizoplane
128 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
129 2599185320 Pseudomonas sp. NFACC36 Isolate Rhizoplane
130 2599185321 Pseudomonas sp. NFACC54 Isolate Rhizoplane
131 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
132 2599185323 Pseudomonas sp. NFACC37-1 Isolate Rhizoplane
133 2599185324 Pseudomonas sp. NFACC46-3 Isolate Rhizoplane
134 2600254930 Pseudomonas sp. NFIX10 Isolate Rhizoplane
135 2643221650 Pseudomonas sp. Root401 Isolate Unclassified
136 2643221664 Massilia sp. Root418 Isolate Unclassified
137 2667528170 Pseudomonas sp. NFACC50-1 Isolate Rhizoplane
138 2667528176 Pseudomonas sp. NFACC11-2 Isolate Rhizoplane
139 2738541280 Massilia sp. GV090 Isolate Unclassified
140 2738541300 Massilia sp. GV016 Isolate Unclassified
141 2738543018 Massilia sp. GV045 Isolate Unclassified
142 2738543030 Massilia sp. GV097 Isolate Unclassified
143 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
144 2825651385 Pseudomonas brassicacearum L13-6-12 Isolate Rhizosphere
145 2852657418 Pseudomonas sp. JAI115 Isolate Rhizosphere
146 2913036834 Pseudomonas viciae 11K1 Isolate Rhizosphere
147 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
148 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
149 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
150 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
151 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
152 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
153 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 79.07
Metatranscriptomes 0.47
Isolates 20.47

Biome Distribution

Category Percentage (%)
Aerial Root 0.93
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 12.09
Rhizosphere 75.81
Stem 0
Stem Tuber 0
Unclassified 3.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400485_08999 3300038735 Bacteria 1742
2 rootH1_10257379 3300003323 Bacteria 1066
3 Ga0065714_10003146 3300005288 Bacteria 15707
4 Ga0065715_10725439 3300005293 Bacteria 641
5 Ga0070659_100076525 3300005366 Bacteria 2668
6 Ga0070694_100175811 3300005444 Bacteria 1580
7 Ga0070708_100117315 3300005445 Bacteria 2451
8 Ga0070706_100218704 3300005467 Bacteria 1778
9 Ga0070697_100024057 3300005536 Bacteria 4849
10 Ga0068853_100173787 3300005539 Bacteria 1950
11 Ga0068854_100273608 3300005578 Bacteria 1357
12 Ga0068852_100101973 3300005616 Bacteria 2592
13 Ga0075428_100012972 3300006844 Bacteria 9266
14 Ga0075430_101742023 3300006846 Unclassified 511
15 Ga0075431_100057365 3300006847 Bacteria 4017
16 Ga0075431_100623972 3300006847 Archaea 1060
17 Ga0075434_100048650 3300006871 Bacteria 4207
18 Ga0075434_100247390 3300006871 Bacteria 1802
19 Ga0075429_100024741 3300006880 Bacteria 5210
20 Ga0068865_100845447 3300006881 Bacteria 792
21 Ga0075436_100053339 3300006914 Bacteria 2791
22 Ga0075435_100022426 3300007076 Bacteria 4872
23 Ga0114129_10032145 3300009147 Bacteria 7418
24 Ga0105243_10078064 3300009148 Bacteria 2695
25 Ga0105241_10058822 3300009174 Bacteria 2952
26 Ga0105242_10020073 3300009176 Bacteria 5236
27 Ga0105242_10228041 3300009176 Bacteria 1668
28 Ga0105242_10950490 3300009176 Bacteria 863
29 Ga0105237_10364557 3300009545 Bacteria 1449
30 Ga0105238_10586320 3300009551 Bacteria 1122
31 Ga0105238_11440704 3300009551 Bacteria 716
32 Ga0105239_10421546 3300010375 Bacteria 1512
33 Ga0157370_11589178 3300013104 Bacteria 587
34 Ga0157369_10164558 3300013105 Bacteria 2340
35 Ga0157378_10089110 3300013297 Bacteria 2801
36 Ga0157378_10806789 3300013297 Bacteria 964
37 Ga0157372_10536365 3300013307 Bacteria 1364
38 Ga0157372_11128634 3300013307 Bacteria 907
39 Ga0157376_11577094 3300014969 Unclassified 690
40 Ga0182006_1000143 3300015261 Bacteria 76634
41 Ga0182006_1000842 3300015261 Bacteria 20632
42 Ga0182006_1037279 3300015261 Bacteria 1928
43 Ga0182007_10064369 3300015262 Bacteria 1202
44 Ga0207655_1114571 3300025728 Bacteria 904
45 Ga0207713_1114904 3300025735 Bacteria 910
46 Ga0207705_10003551 3300025909 Bacteria 11874
47 Ga0207671_10402931 3300025914 Bacteria 1088
48 Ga0207657_10026608 3300025919 Bacteria 5310
49 Ga0207649_10289359 3300025920 Bacteria 1194
50 Ga0207694_10978070 3300025924 Bacteria 716
51 Ga0207690_10141302 3300025932 Bacteria 1774
52 Ga0207706_10189868 3300025933 Bacteria 1804
53 Ga0207686_10167658 3300025934 Bacteria 1546
54 Ga0207686_10555688 3300025934 Bacteria 898
55 Ga0207709_10082025 3300025935 Bacteria 2081
56 Ga0207689_10152457 3300025942 Bacteria 1905
57 Ga0207667_10007073 3300025949 Bacteria 13558
58 Ga0207639_10512077 3300026041 Bacteria 1098
59 Ga0207639_11510468 3300026041 Unclassified 630
60 Ga0207678_11215438 3300026067 Bacteria 667
61 Ga0265338_10367306 3300028800 Bacteria 1031
62 Ga0265332_10009380 3300031238 Bacteria 4370
63 Ga0265328_10103724 3300031239 Bacteria 1054
64 Ga0265325_10003086 3300031241 Bacteria 11009
65 Ga0265331_10170970 3300031250 Bacteria 983
66 Ga0265327_10000085 3300031251 Bacteria 203068
67 Ga0265316_10014319 3300031344 Bacteria 6988
68 Ga0265313_10075144 3300031595 Bacteria 1547
69 Ga0316593_10004868 3300032168 Bacteria 3491
70 Ga0395899_0004457 3300037312 Bacteria 10923
71 Ga0395899_0014499 3300037312 Bacteria 6016
72 Ga0395900_0000081 3300037418 Bacteria 174128
73 Ga0395900_0001382 3300037418 Bacteria 29152
74 Ga0395900_0266327 3300037418 Bacteria 1709
75 Ga0395898_0267481 3300037466 Bacteria 1630
76 Ga0395905_0002349 3300037471 Bacteria 21098
77 Ga0395905_0960087 3300037471 Bacteria 758
78 Ga0395905_1380868 3300037471 Bacteria 608
79 Ga0395901_0000083 3300038443 Bacteria 128816
80 Ga0395901_0006215 3300038443 Bacteria 12102
81 Ga0395901_0416362 3300038443 Bacteria 1378
82 Ga0400484_25502 3300038725 Bacteria 3520
83 Ga0400488_23108 3300038741 Bacteria 3382
84 Ga0400488_28017 3300038741 Bacteria 3464
85 Ga0400488_40187 3300038741 Unclassified 2042
86 Ga0400486_05986 3300038742 Bacteria 2741
87 Ga0400483_057873 3300039062 Bacteria 24525
88 Ga0400483_223473 3300039062 Bacteria 8815
89 Ga0400487_09318 3300039110 Bacteria 7069
90 Ga0400487_17739 3300039110 Bacteria 6098
91 Ga0400487_42718 3300039110 Unclassified 1039
92 Ga0400487_58144 3300039110 Bacteria 59872
93 Ga0439432_024141 3300042006 Bacteria 1999
94 Ga0439451_000032 3300042009 Bacteria 28156
95 Ga0439452_041414 3300042010 Bacteria 1084
96 Ga0451577_0149183 3300042876 Bacteria 2103
97 Ga0451577_0178762 3300042876 Unclassified 1913
98 Ga0451577_0302447 3300042876 Bacteria 1449
99 Ga0451577_0666273 3300042876 Bacteria 943
100 Ga0466972_0014956 3300044658 Bacteria 3882
101 Ga0466972_0098855 3300044658 Bacteria 1381
102 Ga0453683_0081847 3300044673 Bacteria 2023
103 Ga0453683_0111700 3300044673 Bacteria 1718
104 Ga0453683_0159728 3300044673 Bacteria 1426
105 Ga0466965_0000431 3300044683 Bacteria 14545
106 Ga0466965_0015364 3300044683 Bacteria 3636
107 Ga0466965_0048849 3300044683 Bacteria 2097
108 Ga0466965_0153309 3300044683 Bacteria 1205
109 Ga0466966_0004898 3300044684 Bacteria 8800
110 Ga0466966_0048900 3300044684 Bacteria 2693
111 Ga0466963_0187649 3300044694 Bacteria 1444
112 Ga0466964_0001439 3300044706 Bacteria 8127
113 Ga0466964_0007744 3300044706 Bacteria 4020
114 Ga0466964_0022625 3300044706 Bacteria 2440
115 Ga0466964_0085099 3300044706 Bacteria 1365
116 Ga0453684_0000195 3300044712 Bacteria 265496
117 Ga0453684_0000471 3300044712 Bacteria 159987
118 Ga0453684_0001455 3300044712 Bacteria 67258
119 Ga0453684_0577256 3300044712 Bacteria 1235
120 Ga0453684_1065925 3300044712 Bacteria 856
121 Ga0453684_1215506 3300044712 Bacteria 790
122 Ga0453684_1643573 3300044712 Bacteria 658
123 Ga0466968_0025658 3300044735 Bacteria 2415
124 Ga0466970_0588620 3300044765 Bacteria 645
125 Ga0466957_0255888 3300044842 Bacteria 1165
126 Ga0466957_0306251 3300044842 Bacteria 1068
127 Ga0466959_0007474 3300045049 Bacteria 7670
128 Ga0466959_0112260 3300045049 Bacteria 1944
129 Ga0466959_0230996 3300045049 Bacteria 1280
130 Ga0451576_0000013 3300045051 Bacteria 665120
131 Ga0451576_0007581 3300045051 Bacteria 12931
132 Ga0451576_0017337 3300045051 Bacteria 7922
133 Ga0451576_0053965 3300045051 Bacteria 4208
134 Ga0451576_0097604 3300045051 Bacteria 3056
135 Ga0451576_0102462 3300045051 Bacteria 2978
136 Ga0451576_0112036 3300045051 Bacteria 2840
137 Ga0451576_0186296 3300045051 Bacteria 2167
138 Ga0451576_0247993 3300045051 Bacteria 1861
139 Ga0451576_0348101 3300045051 Bacteria 1551
140 Ga0451576_0370014 3300045051 Bacteria 1501
141 Ga0451576_0447146 3300045051 Unclassified 1356
142 Ga0466967_0161654 3300045976 Bacteria 2102
143 Ga0466967_0583113 3300045976 Bacteria 1102
144 Ga0495606_0063148 3300046507 Bacteria 2361
145 Ga0495606_0063416 3300046507 Bacteria 2355
146 Ga0495587_0066131 3300046536 Bacteria 2109
147 Ga0495609_0070504 3300046538 Bacteria 1536
148 Ga0495597_0019730 3300046542 Bacteria 3149
149 Ga0495597_0061572 3300046542 Bacteria 1634
150 Ga0495611_0161494 3300046648 Bacteria 1047
151 Ga0495625_0006041 3300046660 Bacteria 10875
152 Ga0495659_0000030 3300046664 Bacteria 66492
153 Ga0495671_0000086 3300046692 Bacteria 87499
154 Ga0495660_0000537 3300046810 Bacteria 31055
155 Ga0495660_0178480 3300046810 Bacteria 1029
156 Ga0495672_0000458 3300047320 Bacteria 48213
157 Ga0495686_0021152 3300047472 Bacteria 4326
158 Ga0496102_0014825 3300048905 Bacteria 6779
159 Ga0496105_0214124 3300048908 Bacteria 1570
160 Ga0496111_0823485 3300048914 Bacteria 671
161 Ga0501042_0313859 3300049578 Bacteria 1132
162 Ga0501047_0004470 3300049581 Bacteria 13159
163 Ga0501076_0345884 3300049592 Bacteria 1221
164 Ga0501080_0115647 3300049742 Bacteria 2487
165 Ga0501044_0091328 3300049823 Bacteria 3071
166 nmdc:mga05p37_96782_c1 3300050507 Bacteria 3637
167 nmdc:mga09592_19175_c1 3300050508 Bacteria 5613
168 nmdc:mga0n895_175213_c1 3300050512 Bacteria 2176
169 nmdc:mga0n895_409797_c1 3300050512 Bacteria 1371
170 nmdc:mga0a205_95671_c1 3300050515 Bacteria 2869
171 Ga0501082_0097039 3300060353 Bacteria 2548
172 2510285168 2510065053 Bacteria 5005518
173 2510293996 2510065055 Bacteria 5037935
174 2510313029 2510065058 Bacteria 5005894
175 2511825544 2511231156 Bacteria 6845832
176 2599614261 2599185212 Bacteria 6765997
177 2599768695 2599185248 Bacteria 6696816
178 2599884449 2599185289 Bacteria 6778765
179 2599896372 2599185291 Bacteria 6775623
180 2599941371 2599185302 Bacteria 5954930
181 2599953109 2599185304 Bacteria 5951361
182 2599958279 2599185305 Bacteria 6748700
183 2599982638 2599185309 Bacteria 5969593
184 2599989761 2599185310 Bacteria 6014457
185 2599998657 2599185312 Bacteria 5912071
186 2600003656 2599185313 Bacteria 6658188
187 2600015981 2599185315 Bacteria 6771107
188 2600029360 2599185317 Bacteria 6435722
189 2600036146 2599185318 Bacteria 6961590
190 2600040851 2599185319 Bacteria 6637840
191 2600047337 2599185320 Bacteria 5963263
192 2600051187 2599185321 Bacteria 6764560
193 2600059651 2599185322 Bacteria 6763055
194 2600065805 2599185323 Bacteria 6688755
195 2600069293 2599185324 Bacteria 6590677
196 2600358735 2600254930 Bacteria 6431253
197 2644280957 2643221650 Bacteria 7029547
198 2644359912 2643221664 Bacteria 7272945
199 2671089067 2667528170 Bacteria 6786960
200 2671126728 2667528176 Bacteria 6724917
201 2738742669 2738541280 Bacteria 6630198
202 2738846583 2738541300 Bacteria 6675882
203 2739277225 2738543018 Bacteria 6718814
204 2739346215 2738543030 Bacteria 6719714
205 2774128259 2773857672 Bacteria 4993178
206 2825652420 2825651385 Bacteria 6715909
207 2852660162 2852657418 Bacteria 6472974
208 2913039078 2913036834 Bacteria 6704877
209 2917835384 2917832318 Bacteria 5346010
210 2919129279 2919125081 Bacteria 5385106
211 2919538246 2919534386 Bacteria 4577686
212 2974299584 2974298342 Bacteria 4840922
213 2984501940 2984499530 Bacteria 5020881
214 2984504564 2984504281 Bacteria 5262371
215 8016733625 8016728285 Bacteria 5263933
216 Ga0400485_08999
217 rootH1_10257379
218 Ga0065714_10003146
219 Ga0065715_10725439
220 Ga0070659_100076525
221 Ga0070694_100175811
222 Ga0070708_100117315
223 Ga0070706_100218704
224 Ga0070697_100024057
225 Ga0068853_100173787
226 Ga0068854_100273608
227 Ga0068852_100101973
228 Ga0075428_100012972
229 Ga0075430_101742023
230 Ga0075431_100057365
231 Ga0075431_100623972
232 Ga0075434_100048650
233 Ga0075434_100247390
234 Ga0075429_100024741
235 Ga0068865_100845447
236 Ga0075436_100053339
237 Ga0075435_100022426
238 Ga0114129_10032145
239 Ga0105243_10078064
240 Ga0105241_10058822
241 Ga0105242_10020073
242 Ga0105242_10228041
243 Ga0105242_10950490
244 Ga0105237_10364557
245 Ga0105238_10586320
246 Ga0105238_11440704
247 Ga0105239_10421546
248 Ga0157370_11589178
249 Ga0157369_10164558
250 Ga0157378_10089110
251 Ga0157378_10806789
252 Ga0157372_10536365
253 Ga0157372_11128634
254 Ga0157376_11577094
255 Ga0182006_1000143
256 Ga0182006_1000842
257 Ga0182006_1037279
258 Ga0182007_10064369
259 Ga0207655_1114571
260 Ga0207713_1114904
261 Ga0207705_10003551
262 Ga0207671_10402931
263 Ga0207657_10026608
264 Ga0207649_10289359
265 Ga0207694_10978070
266 Ga0207690_10141302
267 Ga0207706_10189868
268 Ga0207686_10167658
269 Ga0207686_10555688
270 Ga0207709_10082025
271 Ga0207689_10152457
272 Ga0207667_10007073
273 Ga0207639_10512077
274 Ga0207639_11510468
275 Ga0207678_11215438
276 Ga0265338_10367306
277 Ga0265332_10009380
278 Ga0265328_10103724
279 Ga0265325_10003086
280 Ga0265331_10170970
281 Ga0265327_10000085
282 Ga0265316_10014319
283 Ga0265313_10075144
284 Ga0316593_10004868
285 Ga0395899_0004457
286 Ga0395899_0014499
287 Ga0395900_0000081
288 Ga0395900_0001382
289 Ga0395900_0266327
290 Ga0395898_0267481
291 Ga0395905_0002349
292 Ga0395905_0960087
293 Ga0395905_1380868
294 Ga0395901_0000083
295 Ga0395901_0006215
296 Ga0395901_0416362
297 Ga0400484_25502
298 Ga0400488_23108
299 Ga0400488_28017
300 Ga0400488_40187
301 Ga0400486_05986
302 Ga0400483_057873
303 Ga0400483_223473
304 Ga0400487_09318
305 Ga0400487_17739
306 Ga0400487_42718
307 Ga0400487_58144
308 Ga0439432_024141
309 Ga0439451_000032
310 Ga0439452_041414
311 Ga0451577_0149183
312 Ga0451577_0178762
313 Ga0451577_0302447
314 Ga0451577_0666273
315 Ga0466972_0014956
316 Ga0466972_0098855
317 Ga0453683_0081847
318 Ga0453683_0111700
319 Ga0453683_0159728
320 Ga0466965_0000431
321 Ga0466965_0015364
322 Ga0466965_0048849
323 Ga0466965_0153309
324 Ga0466966_0004898
325 Ga0466966_0048900
326 Ga0466963_0187649
327 Ga0466964_0001439
328 Ga0466964_0007744
329 Ga0466964_0022625
330 Ga0466964_0085099
331 Ga0453684_0000195
332 Ga0453684_0000471
333 Ga0453684_0001455
334 Ga0453684_0577256
335 Ga0453684_1065925
336 Ga0453684_1215506
337 Ga0453684_1643573
338 Ga0466968_0025658
339 Ga0466970_0588620
340 Ga0466957_0255888
341 Ga0466957_0306251
342 Ga0466959_0007474
343 Ga0466959_0112260
344 Ga0466959_0230996
345 Ga0451576_0000013
346 Ga0451576_0007581
347 Ga0451576_0017337
348 Ga0451576_0053965
349 Ga0451576_0097604
350 Ga0451576_0102462
351 Ga0451576_0112036
352 Ga0451576_0186296
353 Ga0451576_0247993
354 Ga0451576_0348101
355 Ga0451576_0370014
356 Ga0451576_0447146
357 Ga0466967_0161654
358 Ga0466967_0583113
359 Ga0495606_0063148
360 Ga0495606_0063416
361 Ga0495587_0066131
362 Ga0495609_0070504
363 Ga0495597_0019730
364 Ga0495597_0061572
365 Ga0495611_0161494
366 Ga0495625_0006041
367 Ga0495659_0000030
368 Ga0495671_0000086
369 Ga0495660_0000537
370 Ga0495660_0178480
371 Ga0495672_0000458
372 Ga0495686_0021152
373 Ga0496102_0014825
374 Ga0496105_0214124
375 Ga0496111_0823485
376 Ga0501042_0313859
377 Ga0501047_0004470
378 Ga0501076_0345884
379 Ga0501080_0115647
380 Ga0501044_0091328
381 nmdc:mga05p37_96782_c1
382 nmdc:mga09592_19175_c1
383 nmdc:mga0n895_175213_c1
384 nmdc:mga0n895_409797_c1
385 nmdc:mga0a205_95671_c1
386 Ga0501082_0097039
387 2510285168
388 2510293996
389 2510313029
390 2511825544
391 2599614261
392 2599768695
393 2599884449
394 2599896372
395 2599941371
396 2599953109
397 2599958279
398 2599982638
399 2599989761
400 2599998657
401 2600003656
402 2600015981
403 2600029360
404 2600036146
405 2600040851
406 2600047337
407 2600051187
408 2600059651
409 2600065805
410 2600069293
411 2600358735
412 2644280957
413 2644359912
414 2671089067
415 2671126728
416 2738742669
417 2738846583
418 2739277225
419 2739346215
420 2774128259
421 2825652420
422 2852660162
423 2913039078
424 2917835384
425 2919129279
426 2919538246
427 2974299584
428 2984501940
429 2984504564
430 8016733625

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01584

CheW

CheW-like domain

21

162

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qdl-assembly2.cif.gz_B crystal structure of scaffolding protein ttchew from thermoanaerobacter tengcongensis 0.9117 7 149
4jpb-assembly1.cif.gz_W the structure of a ternary complex between chea domains p4 and p5 with chew and with an unzipped fragment of tm14, a chemoreceptor analog from thermotoga maritima. 0.8934 6 151
8c5v-assembly1.cif.gz_H chemotaxis core signalling unit from e protein lysed e. coli cells 0.886 7 152
2qdl-assembly1.cif.gz_A crystal structure of scaffolding protein ttchew from thermoanaerobacter tengcongensis 0.8754 1 149
8c5v-assembly1.cif.gz_H chemotaxis core signalling unit from e protein lysed e. coli cells 0.8745 7 152
ID Description Score Start End Superfamily
af_P0A964_36_100_2.40.50.180 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 0.8848 27 94 2.40.50.180
2qdlB01 Mainly Beta;Roll;SH3 type barrels.;SH3 Domains 0.8696 8 140 2.30.30.40
2qdlB02 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 0.8627 28 98 2.40.50.180
af_P0A964_36_100_2.40.50.180 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 0.8593 27 94 2.40.50.180
2qdlB01 Mainly Beta;Roll;SH3 type barrels.;SH3 Domains 0.844 8 140 2.30.30.40
ID Description Score Start End GO Terms
AF-A0A521YGC1-F1-model_v4 Purine-binding chemotaxis protein CheW 0.992 6 151 GO:0005829
GO:0006935
GO:0007165
AF-A0A1H8Q8L5-F1-model_v4 Purine-binding chemotaxis protein CheW 0.9909 7 155 GO:0005829
GO:0006935
GO:0007165
AF-A0A7X5N3C3-F1-model_v4 Chemotaxis protein CheW 0.988 10 108 GO:0005829
GO:0006935
GO:0007165
AF-A0A3E1SBT9-F1-model_v4 deleted 0.9852 7 155
AF-C7RJ93-F1-model_v4 CheW protein 0.9827 7 155 GO:0005829
GO:0006935
GO:0007165

Map