F323424

General Info

Members Datasets Scaffolds Average Seq Length
212 147 206 338

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0004717|Ga0500568_0004717_4812_5960
Length 382
Sequence MVINPAATLHTHHDATNAAPISAGAAGEQGPRGVFCIRKSHRPVSTSPIEPRVIPAEARERLRIMFIAKHAKWAGGLHPDDGNHALYHVETREVLKGLGLNLVLEDNYEALFEKPDVDFVFPLLNRGGFLNSEMMLPLLCTRLGLPYLGATPILRGLADDKHLTKLCSAARGVPTAPWAIYREGAPVTQDRCPAGTRMVIKPNASSASWGVQDAHDWAGVEAAVASIHSEGHDAIVEPFLNGSDVEVPVITIDGKPMVMPMMLFEQADPTHLRTYYEKRDLVERASKYELVPFDDAIWVPRIAELTLKMAEEYRPFDYGRFEFRFDRETGTLNFLEVNLQANLWSQKVYGRSAVLAGMTQSQLIETILYEGLSRHGLLGSEA

Samples

Sample ID Description Type Environment
1 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
2 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
3 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
4 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
5 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
6 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
7 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
8 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
9 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
10 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
13 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
14 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
23 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
24 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
39 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
40 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
58 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
86 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
91 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
92 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
93 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
94 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
95 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
96 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
97 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
98 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
101 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
102 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
103 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
104 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
105 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
106 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
107 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
108 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
111 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
112 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
113 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
114 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
119 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
126 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
127 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
131 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
132 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
135 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
136 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
137 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
138 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
139 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
140 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
141 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
142 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
143 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
144 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
145 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
146 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
147 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.23
Metatranscriptomes 0.94
Isolates 2.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.64
Nodule 0
Rhizoplane 0
Rhizosphere 70.28
Stem 0
Stem Tuber 0
Unclassified 7.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1004722 3300000549 Bacteria 1762
2 Ga0055536_1004656 3300003781 Bacteria 6935
3 Ga0055536_1005034 3300003781 Bacteria 6566
4 Ga0055536_1008915 3300003781 Bacteria 4233
5 Ga0055531_10004920 3300003794 Bacteria 7943
6 Ga0065707_10082488 3300005295 Bacteria 14594
7 Ga0065707_10089317 3300005295 Bacteria 4404
8 Ga0070658_10000013 3300005327 Bacteria 267776
9 Ga0070670_100089292 3300005331 Bacteria 2649
10 Ga0070677_10000498 3300005333 Bacteria 13530
11 Ga0070666_10002330 3300005335 Bacteria 11478
12 Ga0070680_100000717 3300005336 Bacteria 23047
13 Ga0068868_100000002 3300005338 Bacteria 159433
14 Ga0070660_100000539 3300005339 Bacteria 25340
15 Ga0070660_100004209 3300005339 Bacteria 9931
16 Ga0070661_100000222 3300005344 Bacteria 47111
17 Ga0070692_10008585 3300005345 Bacteria 4563
18 Ga0070668_100000094 3300005347 Bacteria 56388
19 Ga0070668_100096776 3300005347 Bacteria 2333
20 Ga0070669_100014536 3300005353 Bacteria 5599
21 Ga0070675_100230715 3300005354 Bacteria 1615
22 Ga0070671_100175980 3300005355 Bacteria 1811
23 Ga0070659_100000029 3300005366 Bacteria 139518
24 Ga0070659_100004468 3300005366 Bacteria 9992
25 Ga0070667_100000025 3300005367 Bacteria 190744
26 Ga0070679_100000001 3300005530 Bacteria 764811
27 Ga0070684_100251650 3300005535 Bacteria 1615
28 Ga0068853_100022609 3300005539 Bacteria 5253
29 Ga0068853_100151693 3300005539 Bacteria 2086
30 Ga0070686_100000302 3300005544 Bacteria 32898
31 Ga0070665_100000154 3300005548 Bacteria 125835
32 Ga0070665_100001688 3300005548 Bacteria 25443
33 Ga0068859_100013139 3300005617 Bacteria 8319
34 Ga0068859_100022219 3300005617 Bacteria 6361
35 Ga0068864_100002862 3300005618 Bacteria 14259
36 Ga0068863_100000067 3300005841 Bacteria 117275
37 Ga0068863_100179060 3300005841 Bacteria 2035
38 Ga0068858_100018091 3300005842 Bacteria 6600
39 Ga0068860_100000049 3300005843 Bacteria 208782
40 Ga0068860_100000083 3300005843 Bacteria 168189
41 Ga0068860_100019605 3300005843 Bacteria 6559
42 Ga0068860_100215099 3300005843 Bacteria 1865
43 Ga0068862_100031648 3300005844 Bacteria 4468
44 Ga0068862_100142389 3300005844 Bacteria 2129
45 Ga0081539_10015849 3300005985 Bacteria 5437
46 Ga0075365_10005333 3300006038 Bacteria 6922
47 Ga0075368_10000040 3300006042 Bacteria 29898
48 Ga0075363_100019359 3300006048 Bacteria 3403
49 Ga0075364_10015089 3300006051 Bacteria 4784
50 Ga0075367_10007144 3300006178 Bacteria 5698
51 Ga0075369_10003439 3300006186 Bacteria 5765
52 Ga0075369_10012438 3300006186 Bacteria 3363
53 Ga0075366_10008273 3300006195 Bacteria 5777
54 Ga0075430_100043588 3300006846 Bacteria 3793
55 Ga0075434_100220393 3300006871 Bacteria 1917
56 Ga0097620_100013139 3300006931 Bacteria 8319
57 Ga0097620_100022219 3300006931 Bacteria 6361
58 Ga0105241_10306905 3300009174 Bacteria 1364
59 Ga0105248_10365649 3300009177 Bacteria 1624
60 Ga0105238_10113680 3300009551 Bacteria 2687
61 Ga0157369_10004442 3300013105 Bacteria 16535
62 Ga0157378_10075389 3300013297 Bacteria 3037
63 Ga0157372_10248521 3300013307 Bacteria 2064
64 Ga0157372_10489142 3300013307 Bacteria 1435
65 Ga0157380_10005752 3300014326 Bacteria 8675
66 Ga0206356_10541036 3300020070 Bacteria 2582
67 Ga0206353_10140861 3300020082 Bacteria 6359
68 Ga0213873_10000010 3300021358 Bacteria 223024
69 Ga0213873_10000017 3300021358 Bacteria 123962
70 Ga0213876_10000027 3300021384 Bacteria 223024
71 Ga0213876_10000071 3300021384 Bacteria 123962
72 Ga0213876_10000486 3300021384 Bacteria 31448
73 Ga0213876_10008252 3300021384 Bacteria 5635
74 Ga0209676_1001749 3300025292 Bacteria 18539
75 Ga0209050_1006478 3300025298 Bacteria 6911
76 Ga0209257_1000130 3300025304 Bacteria 212188
77 Ga0209257_1001675 3300025304 Bacteria 25013
78 Ga0209257_1019661 3300025304 Bacteria 2532
79 Ga0207697_10072114 3300025315 Bacteria 1448
80 Ga0207682_10000763 3300025893 Bacteria 14850
81 Ga0207680_10185335 3300025903 Bacteria 1410
82 Ga0207705_10000002 3300025909 Bacteria 2046852
83 Ga0207660_10003566 3300025917 Bacteria 10136
84 Ga0207657_10000443 3300025919 Bacteria 43872
85 Ga0207657_10000655 3300025919 Bacteria 36836
86 Ga0207657_10030407 3300025919 Bacteria 4902
87 Ga0207649_10000218 3300025920 Bacteria 47072
88 Ga0207652_10000003 3300025921 Bacteria 502441
89 Ga0207694_10102093 3300025924 Bacteria 2274
90 Ga0207659_10217219 3300025926 Bacteria 1535
91 Ga0207687_10075988 3300025927 Bacteria 2412
92 Ga0207690_10000004 3300025932 Bacteria 746138
93 Ga0207690_10002763 3300025932 Bacteria 10596
94 Ga0207669_10369730 3300025937 Bacteria 1114
95 Ga0207691_10218543 3300025940 Bacteria 1653
96 Ga0207668_10000058 3300025972 Bacteria 92179
97 Ga0207640_10146106 3300025981 Bacteria 1730
98 Ga0207658_10000014 3300025986 Bacteria 218248
99 Ga0207658_10000023 3300025986 Bacteria 190806
100 Ga0207677_10000080 3300026023 Bacteria 79544
101 Ga0207703_10026250 3300026035 Bacteria 4583
102 Ga0207678_10023560 3300026067 Bacteria 5383
103 Ga0207641_10000119 3300026088 Bacteria 117312
104 Ga0207641_10000545 3300026088 Bacteria 42249
105 Ga0207641_10037110 3300026088 Bacteria 4069
106 Ga0207676_10001939 3300026095 Bacteria 15104
107 Ga0207674_10030233 3300026116 Bacteria 5697
108 Ga0209813_10000025 3300027866 Bacteria 72196
109 Ga0209974_10029846 3300027876 Bacteria 1807
110 Ga0268266_10000093 3300028379 Bacteria 191879
111 Ga0268266_10000432 3300028379 Bacteria 62927
112 Ga0268265_10107684 3300028380 Bacteria 2267
113 Ga0268265_10210877 3300028380 Bacteria 1692
114 Ga0268264_10000055 3300028381 Bacteria 314947
115 Ga0268264_10000121 3300028381 Bacteria 190368
116 Ga0268264_10006948 3300028381 Bacteria 9498
117 Ga0268264_10061305 3300028381 Bacteria 3155
118 Ga0307405_10051534 3300031731 Bacteria 2554
119 Ga0307413_10058746 3300031824 Bacteria 2359
120 Ga0307410_10143065 3300031852 Bacteria 1772
121 Ga0307410_10215862 3300031852 Bacteria 1473
122 Ga0307406_10111273 3300031901 Bacteria 1886
123 Ga0307407_10173467 3300031903 Bacteria 1423
124 Ga0307412_10004917 3300031911 Bacteria 7464
125 Ga0307412_10045022 3300031911 Bacteria 2882
126 Ga0307412_10228041 3300031911 Bacteria 1432
127 Ga0307409_100053245 3300031995 Bacteria 3109
128 Ga0307409_100116044 3300031995 Bacteria 2256
129 Ga0307414_10029266 3300032004 Bacteria 3583
130 Ga0307414_10034306 3300032004 Bacteria 3362
131 Ga0307414_10050156 3300032004 Bacteria 2890
132 Ga0307414_10050714 3300032004 Bacteria 2876
133 Ga0307414_10107366 3300032004 Bacteria 2115
134 Ga0307414_10217599 3300032004 Bacteria 1566
135 Ga0307411_10106828 3300032005 Bacteria 1993
136 Ga0395905_0060246 3300037471 Bacteria 3550
137 Ga0395901_0239852 3300038443 Bacteria 1891
138 Ga0237819_05277 3300038705 Bacteria 2041
139 Ga0436365_0646826 3300039437 Bacteria 110896
140 Ga0436365_1047135 3300039437 Bacteria 31623
141 Ga0436365_1304423 3300039437 Bacteria 8901
142 Ga0436365_1650613 3300039437 Bacteria 78818
143 Ga0436363_1406635 3300039450 Bacteria 1610
144 Ga0436362_0285880 3300039453 Bacteria 61821
145 Ga0436362_0592983 3300039453 Bacteria 296966
146 Ga0439462_0000097 3300042015 Bacteria 13616
147 Ga0450893_0012800 3300042532 Bacteria 1394
148 Ga0495650_0002754 3300046471 Bacteria 13554
149 Ga0495650_0028063 3300046471 Bacteria 2591
150 Ga0495616_0001098 3300046513 Bacteria 19261
151 Ga0495643_0023434 3300046522 Bacteria 3510
152 Ga0495663_0058723 3300046525 Bacteria 1206
153 Ga0495642_0054089 3300046528 Bacteria 1655
154 Ga0495654_0024965 3300046530 Bacteria 3083
155 Ga0495654_0036927 3300046530 Bacteria 2453
156 Ga0495621_0018797 3300046539 Bacteria 2249
157 Ga0495668_0000053 3300046616 Bacteria 209976
158 Ga0495668_0003046 3300046616 Bacteria 13027
159 Ga0495668_0005191 3300046616 Bacteria 8944
160 Ga0495668_0023944 3300046616 Bacteria 3475
161 Ga0495625_0001232 3300046660 Bacteria 32339
162 Ga0495625_0034422 3300046660 Bacteria 3739
163 Ga0495671_0081955 3300046692 Bacteria 1581
164 Ga0496126_0200012 3300048929 Bacteria 1688
165 Ga0501298_009534 3300049521 Bacteria 1655
166 Ga0501031_0067690 3300049568 Bacteria 2326
167 Ga0501032_0012598 3300049569 Bacteria 6037
168 Ga0501033_0016502 3300049570 Bacteria 5591
169 Ga0501034_0286463 3300049571 Bacteria 1586
170 Ga0501036_0057369 3300049572 Bacteria 3298
171 Ga0501047_0105568 3300049581 Bacteria 2697
172 Ga0501227_005761 3300049665 Bacteria 2656
173 Ga0501257_000001 3300049686 Bacteria 74809
174 Ga0501280_000866 3300049776 Bacteria 6524
175 Ga0501035_0003005 3300049822 Bacteria 16190
176 Ga0501044_0010246 3300049823 Bacteria 10180
177 nmdc:mga03683_11071_c1 3300050489 Bacteria 3251
178 nmdc:mga03683_24_c1 3300050489 Bacteria 78974
179 nmdc:mga00v17_17019_c1 3300050491 Bacteria 4106
180 nmdc:mga00v17_31092_c1 3300050491 Bacteria 3147
181 nmdc:mga0yw44_11119_c1 3300050492 Bacteria 4628
182 nmdc:mga06z11_360_c1 3300050494 Bacteria 17188
183 nmdc:mga04h51_101_c1 3300050495 Bacteria 25485
184 nmdc:mga07m45_9_c1 3300050496 Bacteria 171776
185 nmdc:mga0sz30_22399_c1 3300050516 Bacteria 2043
186 nmdc:mga0sz30_66_c1 3300050516 Bacteria 40813
187 Ga0500643_000004 3300053087 Bacteria 857484
188 Ga0500643_004790 3300053087 Bacteria 5986
189 Ga0500592_000168 3300053116 Bacteria 13083
190 Ga0500592_001756 3300053116 Bacteria 3510
191 Ga0500592_002633 3300053116 Bacteria 2886
192 Ga0500594_0005309 3300053118 Bacteria 2855
193 Ga0500607_000102 3300053121 Bacteria 65607
194 Ga0500658_0068019 3300053134 Bacteria 1497
195 Ga0500568_0003329 3300053139 Bacteria 9036
196 Ga0500568_0004717 3300053139 Bacteria 7230
197 Ga0500604_0000017 3300053151 Bacteria 82010
198 Ga0500604_0000356 3300053151 Bacteria 12632
199 Ga0500616_0003228 3300053153 Bacteria 12636
200 Ga0500616_0012195 3300053153 Bacteria 5036
201 Ga0500627_0000010 3300053158 Bacteria 152372
202 Ga0500627_0000140 3300053158 Bacteria 21155
203 Ga0500627_0001620 3300053158 Bacteria 6361
204 Ga0500627_0015935 3300053158 Bacteria 2920
205 Ga0500611_001501 3300053727 Bacteria 2580
206 Ga0500645_001587 3300053730 Bacteria 11294

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053134 Ga0500658_0068019 Ga0500658_0068019_16_903 287
2 3300049776 Ga0501280_000866 Ga0501280_000866_4710_5678 312
3 3300005338 Ga0068868_100000002 Ga0068868_100000002146 314
4 3300005339 Ga0070660_100000539 Ga0070660_10000053925 314
5 3300005354 Ga0070675_100230715 Ga0070675_1002307152 314
6 3300005366 Ga0070659_100000029 Ga0070659_10000002987 314
7 3300025919 Ga0207657_10000655 Ga0207657_1000065516 314
8 3300025926 Ga0207659_10217219 Ga0207659_102172192 314
9 3300025932 Ga0207690_10000004 Ga0207690_10000004706 314
10 3300026023 Ga0207677_10000080 Ga0207677_1000008060 314
11 3300046539 Ga0495621_0018797 Ga0495621_0018797_165_1169 315
12 3300026067 Ga0207678_10023560 Ga0207678_100235602 324
13 3300005617 Ga0068859_100022219 Ga0068859_1000222191 325
14 3300005618 Ga0068864_100002862 Ga0068864_1000028623 325
15 3300005842 Ga0068858_100018091 Ga0068858_1000180913 325
16 3300005843 Ga0068860_100000049 Ga0068860_10000004964 325
17 3300006931 Ga0097620_100022219 Ga0097620_1000222198 325
18 3300025986 Ga0207658_10000014 Ga0207658_1000001472 325
19 3300026035 Ga0207703_10026250 Ga0207703_100262505 325
20 3300026088 Ga0207641_10000545 Ga0207641_1000054514 325
21 3300026095 Ga0207676_10001939 Ga0207676_100019394 325
22 3300028381 Ga0268264_10000121 Ga0268264_1000012152 325
23 3300005344 Ga0070661_100000222 Ga0070661_10000022226 327
24 3300025315 Ga0207697_10072114 Ga0207697_100721142 327
25 3300025920 Ga0207649_10000218 Ga0207649_1000021820 327
26 3300046522 Ga0495643_0023434 Ga0495643_0023434_303_1331 327
27 3300053087 Ga0500643_000004 Ga0500643_000004_740710_741738 327
28 3300053153 Ga0500616_0012195 Ga0500616_0012195_632_1660 327
29 3300005347 Ga0070668_100096776 Ga0070668_1000967762 330
30 3300005843 Ga0068860_100000083 Ga0068860_10000008394 330
31 3300005844 Ga0068862_100031648 Ga0068862_1000316481 330
32 3300028380 Ga0268265_10107684 Ga0268265_101076842 330
33 3300028381 Ga0268264_10000055 Ga0268264_10000055228 330
34 iso_pu_bacteria 2643221560 2643821941 330
35 iso_pu_bacteria 2643221563 2643835300 330
36 iso_pu_bacteria 2643221608 2644056226 330
37 iso_pu_bacteria 2852653556 2852654894 330
38 iso_pu_bacteria 2852680915 2852684412 330
39 3300006038 Ga0075365_10005333 Ga0075365_100053332 331
40 3300006042 Ga0075368_10000040 Ga0075368_1000004017 331
41 3300006048 Ga0075363_100019359 Ga0075363_1000193592 331
42 3300006051 Ga0075364_10015089 Ga0075364_100150894 331
43 3300006178 Ga0075367_10007144 Ga0075367_100071442 331
44 3300006186 Ga0075369_10012438 Ga0075369_100124382 331
45 3300013105 Ga0157369_10004442 Ga0157369_100044427 331
46 3300027866 Ga0209813_10000025 Ga0209813_1000002557 331
47 3300050489 nmdc:mga03683_24_c1 nmdc:mga03683_24_c1_61069_62070 331
48 3300050491 nmdc:mga00v17_31092_c1 nmdc:mga00v17_31092_c1_486_1487 331
49 3300050492 nmdc:mga0yw44_11119_c1 nmdc:mga0yw44_11119_c1_1690_2691 331
50 3300050494 nmdc:mga06z11_360_c1 nmdc:mga06z11_360_c1_5852_6853 331
51 3300050495 nmdc:mga04h51_101_c1 nmdc:mga04h51_101_c1_1918_2919 331
52 3300050496 nmdc:mga07m45_9_c1 nmdc:mga07m45_9_c1_36636_37637 331
53 3300050516 nmdc:mga0sz30_66_c1 nmdc:mga0sz30_66_c1_34040_35041 331
54 3300053121 Ga0500607_000102 Ga0500607_000102_55535_56536 331
55 3300005544 Ga0070686_100000302 Ga0070686_10000030217 332
56 3300006195 Ga0075366_10008273 Ga0075366_100082732 332
57 3300037471 Ga0395905_0060246 Ga0395905_0060246_1457_2455 332
58 3300039450 Ga0436363_1406635 Ga0436363_1406635_531_1538 332
59 3300042015 Ga0439462_0000097 Ga0439462_0000097_12579_13580 332
60 3300005327 Ga0070658_10000013 Ga0070658_1000001362 333
61 3300005336 Ga0070680_100000717 Ga0070680_10000071720 333
62 3300005339 Ga0070660_100004209 Ga0070660_1000042093 333
63 3300005345 Ga0070692_10008585 Ga0070692_100085853 333
64 3300005366 Ga0070659_100004468 Ga0070659_1000044688 333
65 3300005530 Ga0070679_100000001 Ga0070679_100000001745 333
66 3300005617 Ga0068859_100013139 Ga0068859_10001313910 333
67 3300006846 Ga0075430_100043588 Ga0075430_1000435881 333
68 3300006931 Ga0097620_100013139 Ga0097620_10001313910 333
69 3300009177 Ga0105248_10365649 Ga0105248_103656492 333
70 3300013307 Ga0157372_10489142 Ga0157372_104891422 333
71 3300020082 Ga0206353_10140861 Ga0206353_101408615 333
72 3300021358 Ga0213873_10000010 Ga0213873_100000103 333
73 3300021358 Ga0213873_10000017 Ga0213873_1000001735 333
74 3300021384 Ga0213876_10000027 Ga0213876_100000273 333
75 3300021384 Ga0213876_10000071 Ga0213876_10000071102 333
76 3300021384 Ga0213876_10000486 Ga0213876_1000048618 333
77 3300025893 Ga0207682_10000763 Ga0207682_1000076314 333
78 3300025909 Ga0207705_10000002 Ga0207705_10000002520 333
79 3300025917 Ga0207660_10003566 Ga0207660_100035666 333
80 3300025919 Ga0207657_10000443 Ga0207657_100004435 333
81 3300025919 Ga0207657_10030407 Ga0207657_100304072 333
82 3300025921 Ga0207652_10000003 Ga0207652_10000003339 333
83 3300025932 Ga0207690_10002763 Ga0207690_100027636 333
84 3300032004 Ga0307414_10034306 Ga0307414_100343062 333
85 3300039437 Ga0436365_0646826 Ga0436365_0646826_93299_94306 333
86 3300039437 Ga0436365_1650613 Ga0436365_1650613_46656_47681 333
87 3300039453 Ga0436362_0285880 Ga0436362_0285880_4395_5402 333
88 3300039453 Ga0436362_0592983 Ga0436362_0592983_226071_227096 333
89 3300048929 Ga0496126_0200012 Ga0496126_0200012_396_1418 333
90 3300049521 Ga0501298_009534 Ga0501298_009534_524_1567 333
91 3300049581 Ga0501047_0105568 Ga0501047_0105568_303_1325 333
92 3300049665 Ga0501227_005761 Ga0501227_005761_671_1714 333
93 3300049686 Ga0501257_000001 Ga0501257_000001_27418_28461 333
94 3300053116 Ga0500592_001756 Ga0500592_001756_342_1367 333
95 3300053151 Ga0500604_0000017 Ga0500604_0000017_27591_28592 333
96 3300053158 Ga0500627_0000010 Ga0500627_0000010_135159_136184 333
97 3300003781 Ga0055536_1004656 Ga0055536_10046563 334
98 3300003781 Ga0055536_1005034 Ga0055536_10050345 334
99 3300003781 Ga0055536_1008915 Ga0055536_10089154 334
100 3300003794 Ga0055531_10004920 Ga0055531_100049202 334
101 3300005331 Ga0070670_100089292 Ga0070670_1000892923 334
102 3300005335 Ga0070666_10002330 Ga0070666_100023302 334
103 3300005347 Ga0070668_100000094 Ga0070668_10000009429 334
104 3300005353 Ga0070669_100014536 Ga0070669_1000145365 334
105 3300005355 Ga0070671_100175980 Ga0070671_1001759802 334
106 3300005367 Ga0070667_100000025 Ga0070667_10000002529 334
107 3300005535 Ga0070684_100251650 Ga0070684_1002516501 334
108 3300005539 Ga0068853_100022609 Ga0068853_1000226094 334
109 3300005548 Ga0070665_100000154 Ga0070665_10000015489 334
110 3300005841 Ga0068863_100000067 Ga0068863_10000006729 334
111 3300005841 Ga0068863_100179060 Ga0068863_1001790602 334
112 3300005843 Ga0068860_100019605 Ga0068860_1000196055 334
113 3300005844 Ga0068862_100142389 Ga0068862_1001423892 334
114 3300006871 Ga0075434_100220393 Ga0075434_1002203932 334
115 3300009174 Ga0105241_10306905 Ga0105241_103069052 334
116 3300013307 Ga0157372_10248521 Ga0157372_102485212 334
117 3300020070 Ga0206356_10541036 Ga0206356_105410361 334
118 3300021384 Ga0213876_10008252 Ga0213876_100082523 334
119 3300025292 Ga0209676_1001749 Ga0209676_100174917 334
120 3300025298 Ga0209050_1006478 Ga0209050_10064783 334
121 3300025304 Ga0209257_1000130 Ga0209257_1000130188 334
122 3300025304 Ga0209257_1019661 Ga0209257_10196613 334
123 3300025903 Ga0207680_10185335 Ga0207680_101853351 334
124 3300025927 Ga0207687_10075988 Ga0207687_100759883 334
125 3300025940 Ga0207691_10218543 Ga0207691_102185432 334
126 3300025972 Ga0207668_10000058 Ga0207668_1000005864 334
127 3300025986 Ga0207658_10000023 Ga0207658_1000002329 334
128 3300026088 Ga0207641_10000119 Ga0207641_1000011989 334
129 3300026088 Ga0207641_10037110 Ga0207641_100371102 334
130 3300028379 Ga0268266_10000093 Ga0268266_1000009395 334
131 3300028380 Ga0268265_10210877 Ga0268265_102108772 334
132 3300028381 Ga0268264_10006948 Ga0268264_100069483 334
133 3300031824 Ga0307413_10058746 Ga0307413_100587462 334
134 3300031852 Ga0307410_10143065 Ga0307410_101430652 334
135 3300031852 Ga0307410_10215862 Ga0307410_102158622 334
136 3300031903 Ga0307407_10173467 Ga0307407_101734671 334
137 3300031911 Ga0307412_10045022 Ga0307412_100450222 334
138 3300031995 Ga0307409_100116044 Ga0307409_1001160442 334
139 3300032004 Ga0307414_10029266 Ga0307414_100292662 334
140 3300032004 Ga0307414_10050156 Ga0307414_100501562 334
141 3300032004 Ga0307414_10050714 Ga0307414_100507142 334
142 3300032004 Ga0307414_10107366 Ga0307414_101073663 334
143 3300032004 Ga0307414_10217599 Ga0307414_102175991 334
144 3300032005 Ga0307411_10106828 Ga0307411_101068282 334
145 3300038705 Ga0237819_05277 Ga0237819_05277_889_1917 334
146 3300039437 Ga0436365_1304423 Ga0436365_1304423_6523_7533 334
147 3300042532 Ga0450893_0012800 Ga0450893_0012800_79_1089 334
148 3300046471 Ga0495650_0002754 Ga0495650_0002754_8038_9069 334
149 3300046525 Ga0495663_0058723 Ga0495663_0058723_52_1080 334
150 3300046528 Ga0495642_0054089 Ga0495642_0054089_204_1214 334
151 3300046616 Ga0495668_0000053 Ga0495668_0000053_12845_13870 334
152 3300046660 Ga0495625_0001232 Ga0495625_0001232_12756_13781 334
153 3300053116 Ga0500592_002633 Ga0500592_002633_521_1549 334
154 3300053139 Ga0500568_0003329 Ga0500568_0003329_1536_2564 334
155 3300053730 Ga0500645_001587 Ga0500645_001587_4339_5352 334
156 3300005295 Ga0065707_10082488 Ga0065707_100824882 335
157 3300005333 Ga0070677_10000498 Ga0070677_100004985 335
158 3300005539 Ga0068853_100151693 Ga0068853_1001516932 335
159 3300005548 Ga0070665_100001688 Ga0070665_1000016887 335
160 3300005985 Ga0081539_10015849 Ga0081539_100158494 335
161 3300006186 Ga0075369_10003439 Ga0075369_100034394 335
162 3300009551 Ga0105238_10113680 Ga0105238_101136802 335
163 3300013297 Ga0157378_10075389 Ga0157378_100753892 335
164 3300014326 Ga0157380_10005752 Ga0157380_100057525 335
165 3300025304 Ga0209257_1001675 Ga0209257_100167510 335
166 3300025924 Ga0207694_10102093 Ga0207694_101020932 335
167 3300025937 Ga0207669_10369730 Ga0207669_103697301 335
168 3300025981 Ga0207640_10146106 Ga0207640_101461062 335
169 3300026116 Ga0207674_10030233 Ga0207674_100302332 335
170 3300027876 Ga0209974_10029846 Ga0209974_100298462 335
171 3300028379 Ga0268266_10000432 Ga0268266_1000043268 335
172 3300031731 Ga0307405_10051534 Ga0307405_100515342 335
173 3300031901 Ga0307406_10111273 Ga0307406_101112732 335
174 3300031911 Ga0307412_10004917 Ga0307412_100049173 335
175 3300031911 Ga0307412_10228041 Ga0307412_102280412 335
176 3300031995 Ga0307409_100053245 Ga0307409_1000532452 335
177 3300038443 Ga0395901_0239852 Ga0395901_0239852_280_1389 335
178 3300039437 Ga0436365_1047135 Ga0436365_1047135_13175_14287 335
179 3300046471 Ga0495650_0028063 Ga0495650_0028063_1402_2415 335
180 3300046513 Ga0495616_0001098 Ga0495616_0001098_4472_5485 335
181 3300046530 Ga0495654_0024965 Ga0495654_0024965_1565_2578 335
182 3300046530 Ga0495654_0036927 Ga0495654_0036927_320_1396 335
183 3300046616 Ga0495668_0003046 Ga0495668_0003046_7523_8536 335
184 3300046616 Ga0495668_0005191 Ga0495668_0005191_5857_6933 335
185 3300046616 Ga0495668_0023944 Ga0495668_0023944_330_1349 335
186 3300046660 Ga0495625_0034422 Ga0495625_0034422_2046_3059 335
187 3300046692 Ga0495671_0081955 Ga0495671_0081955_341_1354 335
188 3300049568 Ga0501031_0067690 Ga0501031_0067690_712_1740 335
189 3300049569 Ga0501032_0012598 Ga0501032_0012598_3173_4201 335
190 3300049570 Ga0501033_0016502 Ga0501033_0016502_4288_5316 335
191 3300049571 Ga0501034_0286463 Ga0501034_0286463_146_1174 335
192 3300049572 Ga0501036_0057369 Ga0501036_0057369_1548_2576 335
193 3300049822 Ga0501035_0003005 Ga0501035_0003005_923_1951 335
194 3300049823 Ga0501044_0010246 Ga0501044_0010246_5389_6417 335
195 3300050489 nmdc:mga03683_11071_c1 nmdc:mga03683_11071_c1_1725_2789 335
196 3300050491 nmdc:mga00v17_17019_c1 nmdc:mga00v17_17019_c1_492_1556 335
197 3300050516 nmdc:mga0sz30_22399_c1 nmdc:mga0sz30_22399_c1_164_1228 335
198 3300053087 Ga0500643_004790 Ga0500643_004790_4047_5105 335
199 3300053116 Ga0500592_000168 Ga0500592_000168_5675_6688 335
200 3300053118 Ga0500594_0005309 Ga0500594_0005309_1222_2235 335
201 3300053139 Ga0500568_0004717 Ga0500568_0004717_4812_5960 335
202 3300053151 Ga0500604_0000356 Ga0500604_0000356_7039_8052 335
203 3300053153 Ga0500616_0003228 Ga0500616_0003228_4806_5954 335
204 3300053158 Ga0500627_0000140 Ga0500627_0000140_19814_20827 335
205 3300053158 Ga0500627_0001620 Ga0500627_0001620_3937_4950 335
206 3300053158 Ga0500627_0015935 Ga0500627_0015935_329_1405 335
207 3300053727 Ga0500611_001501 Ga0500611_001501_1370_2383 335
208 iso_pu_bacteria 2895880812 2895881423 335
209 3300000549 LJQas_1004722 LJQas_10047222 336
210 3300005295 Ga0065707_10089317 Ga0065707_100893173 336
211 3300005843 Ga0068860_100215099 Ga0068860_1002150992 336
212 3300028381 Ga0268264_10061305 Ga0268264_100613052 336

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07478

Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

168

369

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3r5x-assembly2.cif.gz_C crystal structure of d-alanine--d-alanine ligase from bacillus anthracis complexed with atp 0.8466 19 334
3r5x-assembly2.cif.gz_C crystal structure of d-alanine--d-alanine ligase from bacillus anthracis complexed with atp 0.8301 19 334
3r5x-assembly1.cif.gz_A crystal structure of d-alanine--d-alanine ligase from bacillus anthracis complexed with atp 0.8292 19 334
3r23-assembly1.cif.gz_A crystal structure of d-alanine--d-alanine ligase from bacillus anthracis 0.8211 19 334
3r5x-assembly1.cif.gz_B crystal structure of d-alanine--d-alanine ligase from bacillus anthracis complexed with atp 0.8164 19 334
ID Description Score Start End Superfamily
af_Q4DAR2_102_200_3.30.1490.20 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.8681 119 200 3.30.1490.20
5bpfD02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.8454 107 326 3.30.470.20
af_Q4D060_102_306_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.8428 107 299 3.30.470.20
af_P9WP31_140_368_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8371 107 330 3.40.50.20
1ehiA02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.8256 198 334 3.30.470.20
ID Description Score Start End GO Terms
AF-A0A842I369-F1-model_v4 Phosphoribosylglycinamide synthetase 0.9788 5 336 GO:0005524
GO:0008716
GO:0046872
AF-A0A7W9BQ60-F1-model_v4 D-alanine-D-alanine ligase (EC 6.3.2.4) 0.9779 5 336 GO:0005524
GO:0008716
GO:0046872
AF-A0A537M3Q4-F1-model_v4 Phosphoribosylglycinamide synthetase 0.9759 23 336 GO:0005524
GO:0008716
GO:0046872
AF-A0A537M3Q4-F1-model_v4 Phosphoribosylglycinamide synthetase 0.9638 23 336 GO:0005524
GO:0008716
GO:0046872
AF-A0A4Q2YR31-F1-model_v4 Phosphoribosylglycinamide synthetase 0.9632 68 332 GO:0005524
GO:0008716
GO:0046872

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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