F320361

General Info

Members Datasets Scaffolds Average Seq Length
210 134 421 451

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10081685|Ga0157372_100816852
Length 476
Sequence MLCAFGFELSVGALCFLLYAFSLKQMELDNIKQVYLVGIGGIGMSGLARYFHKRGCEVVGYDRTQTTLTDNLAEEGIAITYIDEVDEIPANFKTPSESLLVIYTPAIPKESAILNFFQDKGFDLKKRSEVLGIISKGMFTVAVAGTHGKTTTSTMVAHILKHSGFDCTAFLGGISSNYDTNVLFGNNNVVVVEADEYDRSFLRLHPDIAIITSMDADHLDIYGDDSHVKESFRLFASQLKEGGKLIRKQGLPLDGGLTYSAKESAAVYATNARVINGTFFFDFKGQGIEINDIELGLPGMHNVENATAAIQAALLLEIAPEKIKAALKDFRGVKRRFEYIIKTDKKIFIDDYAHHPEELRAALSAVKQLYPDKKLTVVFQPHLFTRTRDFVEGFAEVLDMSDELVLLDIYPARELPIPGVTSEIIFNRMKLAKKQISSKENATEIIKELNPELLLTVGAGDIDTLVLPFKEILDNA

Samples

Sample ID Description Type Environment
1 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
4 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
5 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
15 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
46 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
47 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
50 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
53 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
54 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
55 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
56 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
74 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
89 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
94 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
95 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
96 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
97 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
100 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
101 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
102 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
105 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
108 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
109 2738541284 Pedobacter sp. YR016 Isolate Unclassified
110 2738541302 Pedobacter sp. CF074 Isolate Unclassified
111 2738543023 Pedobacter sp. OK628 Isolate Unclassified
112 2739367651 Pedobacter sp. OK291 Isolate Unclassified
113 2739367656 Pedobacter sp. CF523 Isolate Unclassified
114 2739367663 Pedobacter sp. YR510 Isolate Unclassified
115 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
116 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
117 2818991437 Pedobacter terrae 518 Isolate Unclassified
118 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
119 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
120 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
121 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
122 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
123 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
124 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
125 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
126 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
127 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
128 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
129 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
130 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
131 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
132 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
133 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
134 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.14
Metatranscriptomes 0
Isolates 12.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.33
Nodule 0
Rhizoplane 0
Rhizosphere 72.86
Stem 0
Stem Tuber 0
Unclassified 0.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157372_10081685 3300013307 Bacteria 3658
2 SwRhRL2b_contig_3219372 2162886007 Bacteria 4671
3 JGI24736J21556_1001708 3300001904 Bacteria 3957
4 JGI25162J39368_1004404 3300002737 Bacteria 3292
5 JGI25164J39214_1001191 3300002772 Bacteria 7095
6 JGI25152J39213_1000034 3300002773 Bacteria 94987
7 JGI25150J39212_1000001 3300002774 Bacteria 1318726
8 JGI25151J46595_10000001 3300003187 Bacteria 887211
9 JGI25165J46597_1001519 3300003214 Bacteria 11734
10 JGI25153J46596_10000001 3300003215 Bacteria 748985
11 rootH2_10002043 3300003320 Bacteria 24164
12 rootL2_10002528 3300003322 Bacteria 5554
13 rootL2_10006643 3300003322 Bacteria 13952
14 rootL2_10109787 3300003322 Bacteria 4041
15 rootH1_10000030 3300003323 Bacteria 5394
16 rootH1_10040420 3300003323 Bacteria 24093
17 rootH1_10055642 3300003316 Bacteria 3086
18 rootH1_10055642 3300003323 Bacteria 5431
19 rootH1_10075987 3300003323 Bacteria 3363
20 Ga0055536_1000001 3300003781 Bacteria 630663
21 Ga0055530_10003109 3300003791 Bacteria 9828
22 Ga0065165_1002613 3300005262 Bacteria 14716
23 Ga0065714_10004118 3300005288 Bacteria 10479
24 Ga0065714_10016725 3300005288 Bacteria 4699
25 Ga0065714_10065033 3300005288 Bacteria 13724
26 Ga0065714_10067859 3300005288 Bacteria 5147
27 Ga0065704_10000224 3300005289 Bacteria 74956
28 Ga0070658_10000200 3300005327 Bacteria 52651
29 Ga0070658_10014639 3300005327 Bacteria 6294
30 Ga0070660_100063091 3300005339 Bacteria 2880
31 Ga0070661_100135103 3300005344 Bacteria 1855
32 Ga0070673_100008505 3300005364 Bacteria 6826
33 Ga0070663_100050151 3300005455 Bacteria 2967
34 Ga0070681_10022717 3300005458 Bacteria 6302
35 Ga0068853_100050499 3300005539 Bacteria 3578
36 Ga0070665_100000010 3300005548 Bacteria 529545
37 Ga0068855_100000204 3300005563 Bacteria 76041
38 Ga0068855_100000856 3300005563 Bacteria 37762
39 Ga0068855_100018939 3300005563 Bacteria 8275
40 Ga0068856_100000023 3300005614 Bacteria 141671
41 Ga0068856_100014589 3300005614 Bacteria 7591
42 Ga0068856_100033008 3300005614 Bacteria 5070
43 Ga0075428_100004617 3300006844 Bacteria 15234
44 Ga0105240_10000219 3300009093 Bacteria 115431
45 Ga0105240_10147360 3300009093 Bacteria 2807
46 Ga0105240_10175083 3300009093 Bacteria 2537
47 Ga0105240_10204272 3300009093 Bacteria 2314
48 Ga0111539_10002785 3300009094 Bacteria 23212
49 Ga0111539_10036711 3300009094 Bacteria 5922
50 Ga0105245_10040385 3300009098 Bacteria 4156
51 Ga0105241_10032128 3300009174 Bacteria 3933
52 Ga0105237_10001062 3300009545 Bacteria 36906
53 Ga0105237_10005415 3300009545 Bacteria 14411
54 Ga0105237_10007996 3300009545 Bacteria 11511
55 Ga0105238_10067266 3300009551 Bacteria 3584
56 Ga0105238_10080237 3300009551 Bacteria 3252
57 Ga0105239_10000007 3300010375 Bacteria 385297
58 Ga0105239_10000011 3300010375 Bacteria 337500
59 Ga0105239_10003976 3300010375 Bacteria 17916
60 Ga0105239_10011878 3300010375 Bacteria 9716
61 Ga0157373_10003564 3300013100 Bacteria 11762
62 Ga0157373_10004594 3300013100 Bacteria 10387
63 Ga0157373_10014188 3300013100 Bacteria 5844
64 Ga0157371_10000922 3300013102 Bacteria 32992
65 Ga0157371_10012978 3300013102 Bacteria 6343
66 Ga0157371_10015661 3300013102 Bacteria 5680
67 Ga0157371_10017599 3300013102 Bacteria 5305
68 Ga0157371_10020060 3300013102 Bacteria 4922
69 Ga0157370_10000531 3300013104 Bacteria 47724
70 Ga0157370_10032083 3300013104 Bacteria 5132
71 Ga0157370_10041933 3300013104 Bacteria 4412
72 Ga0157370_10052746 3300013104 Bacteria 3882
73 Ga0157370_10064472 3300013104 Bacteria 3469
74 Ga0157369_10000402 3300013105 Bacteria 57623
75 Ga0157369_10001883 3300013105 Bacteria 25308
76 Ga0157374_10010145 3300013296 Bacteria 8092
77 Ga0163162_10000082 3300013306 Bacteria 86888
78 Ga0163162_10000558 3300013306 Bacteria 34481
79 Ga0157372_10000026 3300013307 Bacteria 195407
80 Ga0157375_10067625 3300013308 Bacteria 3571
81 Ga0182008_10000006 3300014497 Bacteria 378521
82 Ga0182008_10000769 3300014497 Bacteria 22485
83 Ga0182006_1000878 3300015261 Bacteria 20215
84 Ga0182006_1002059 3300015261 Bacteria 11276
85 Ga0182006_1002552 3300015261 Bacteria 9867
86 Ga0182007_10000033 3300015262 Bacteria 139808
87 Ga0183373_1001 3300015682 Bacteria 1410374
88 Ga0163161_10000085 3300017792 Bacteria 93534
89 Ga0163161_10003986 3300017792 Bacteria 10347
90 Ga0163161_10069652 3300017792 Bacteria 2571
91 Ga0163161_10119849 3300017792 Bacteria 1976
92 Ga0213872_10020247 3300021361 Bacteria 3065
93 Ga0207427_100137 3300025231 Bacteria 88182
94 Ga0209437_100112 3300025233 Bacteria 214292
95 Ga0207425_1000002 3300025245 Bacteria 1362590
96 Ga0209026_1000490 3300025250 Bacteria 28944
97 Ga0209026_1003256 3300025250 Bacteria 5452
98 Ga0209129_1000002 3300025258 Bacteria 1359086
99 Ga0209233_1000126 3300025261 Bacteria 214298
100 Ga0209455_1001554 3300025272 Bacteria 10175
101 Ga0209676_1000008 3300025292 Bacteria 991778
102 Ga0209025_1000004 3300025294 Bacteria 1361782
103 Ga0209758_1000006 3300025297 Bacteria 1359562
104 Ga0209050_1000055 3300025298 Bacteria 339254
105 Ga0209050_1002341 3300025298 Bacteria 16605
106 Ga0207705_10000257 3300025909 Bacteria 51549
107 Ga0207654_10001575 3300025911 Bacteria 11979
108 Ga0207695_10000048 3300025913 Bacteria 421800
109 Ga0207695_10040569 3300025913 Bacteria 4988
110 Ga0207695_10080912 3300025913 Bacteria 3289
111 Ga0207695_10103977 3300025913 Bacteria 2831
112 Ga0207671_10002343 3300025914 Bacteria 20429
113 Ga0207671_10003081 3300025914 Bacteria 17014
114 Ga0207671_10004704 3300025914 Bacteria 12902
115 Ga0207657_10074325 3300025919 Bacteria 2870
116 Ga0207652_10098492 3300025921 Bacteria 2579
117 Ga0207690_10078262 3300025932 Bacteria 2301
118 Ga0207667_10000095 3300025949 Bacteria 143866
119 Ga0207667_10002951 3300025949 Bacteria 21107
120 Ga0207667_10040492 3300025949 Bacteria 4962
121 Ga0207678_10071559 3300026067 Bacteria 2973
122 Ga0207702_10000258 3300026078 Bacteria 61221
123 Ga0207702_10004912 3300026078 Bacteria 11756
124 Ga0207702_10046444 3300026078 Bacteria 3656
125 Ga0207428_10016538 3300027907 Bacteria 6341
126 Ga0268266_10000032 3300028379 Bacteria 395079
127 Ga0307517_10021527 3300028786 Bacteria 8138
128 Ga0307515_10146992 3300028794 Bacteria 2490
129 Ga0265327_10050307 3300031251 Bacteria 2181
130 Ga0307509_10062403 3300031507 Bacteria 3930
131 Ga0307509_10231757 3300031507 Bacteria 1649
132 Ga0307408_100001461 3300031548 Bacteria 17549
133 Ga0307408_100002696 3300031548 Bacteria 12315
134 Ga0307408_100004451 3300031548 Bacteria 9515
135 Ga0307408_100040036 3300031548 Bacteria 3317
136 Ga0307405_10000003 3300031731 Bacteria 569064
137 Ga0307405_10028145 3300031731 Bacteria 3269
138 Ga0307405_10028258 3300031731 Bacteria 3265
139 Ga0307407_10000010 3300031903 Bacteria 186970
140 Ga0307412_10000055 3300031911 Bacteria 147100
141 Ga0307412_10009223 3300031911 Bacteria 5656
142 Ga0307412_10086802 3300031911 Bacteria 2178
143 Ga0307416_100000014 3300032002 Bacteria 249053
144 Ga0307416_100036967 3300032002 Bacteria 3752
145 Ga0307414_10000235 3300032004 Bacteria 35379
146 Ga0307414_10001118 3300032004 Bacteria 13706
147 Ga0307414_10057428 3300032004 Bacteria 2735
148 Ga0307414_10078863 3300032004 Bacteria 2402
149 Ga0307414_10087152 3300032004 Bacteria 2306
150 Ga0307510_10001525 3300033180 Bacteria 25537
151 Ga0395899_0000034 3300037312 Bacteria 302623
152 Ga0395899_0000055 3300037312 Bacteria 220579
153 Ga0395905_0000355 3300037471 Bacteria 65176
154 Ga0395901_0018834 3300038443 Bacteria 7057
155 Ga0436361_0589719 3300039447 Bacteria 7062
156 Ga0451577_0000043 3300042876 Bacteria 329533
157 Ga0451577_0013580 3300042876 Bacteria 7616
158 Ga0453683_0000133 3300044673 Bacteria 108537
159 Ga0453684_0000133 3300044712 Bacteria 329529
160 Ga0453684_0038290 3300044712 Bacteria 6559
161 Ga0453684_0043536 3300044712 Bacteria 6031
162 Ga0451576_0000097 3300045051 Bacteria 220569
163 Ga0451576_0002108 3300045051 Bacteria 30972
164 Ga0451576_0016159 3300045051 Bacteria 8247
165 Ga0495638_0000005 3300046460 Bacteria 680627
166 Ga0495651_0110536 3300046462 Bacteria 2033
167 Ga0495610_0000051 3300046512 Bacteria 143715
168 Ga0495610_0063911 3300046512 Bacteria 1741
169 Ga0495631_0005234 3300046518 Bacteria 6822
170 Ga0495633_0024816 3300046558 Bacteria 2958
171 Ga0495625_0058178 3300046660 Bacteria 2747
172 Ga0495687_001143 3300047443 Bacteria 25711
173 Ga0501223_000184 3300049663 Bacteria 16387
174 Ga0501236_000068 3300049670 Bacteria 9344
175 Ga0501225_0007747 3300049705 Bacteria 3104
176 Ga0501264_001788 3300049761 Bacteria 2157
177 nmdc:mga08y16_21866_c1 3300050511 Bacteria 6750
178 Ga0500635_0017665 3300053080 Bacteria 2141
179 Ga0500651_0000279 3300053093 Bacteria 30029
180 Ga0500616_0000003 3300053153 Bacteria 1220687
181 Ga0500616_0045947 3300053153 Unclassified 2324
182 Ga0500622_0000018 3300053156 Bacteria 307548
183 Ga0500622_0000021 3300053156 Bacteria 268013
184 Ga0500622_0001711 3300053156 Bacteria 17007
185 2586209583 2585427687 Bacteria 5544917
186 2738760272 2738541284 Bacteria 5199923
187 2738852120 2738541302 Bacteria 5944758
188 2739302394 2738543023 Bacteria 6767879
189 2739589703 2739367651 Bacteria 6359826
190 2739616485 2739367656 Bacteria 5152243
191 2739647132 2739367663 Bacteria 5040914
192 2740033570 2739367866 Bacteria 4215900
193 2776612322 2775506987 Bacteria 5373360
194 2819546659 2818991437 Bacteria 5805520
195 2842725353 2842722452 Bacteria 6263924
196 2842912630 2842909656 Bacteria 6185908
197 2849281889 2849281842 Bacteria 6065644
198 2852625183 2852623160 Bacteria 4376875
199 2857629610 2857627736 Bacteria 5625397
200 2884636084 2884634485 Bacteria 3928637
201 2884934198 2884933994 Bacteria 4535041
202 2896319577 2896317667 Bacteria 4606601
203 2898713380 2898713307 Bacteria 4110805
204 2902052352 2902048731 Bacteria 4976191
205 2904446797 2904445276 Bacteria 5310396
206 2919189544 2919186247 Bacteria 6244071
207 2919696228 2919692658 Bacteria 5943958
208 2939667770 2939664404 Bacteria 6364494
209 2946002271 2945997725 Bacteria 6404843
210 2954019170 2954016120 Bacteria 6446024
211 2977233833 2977232053 Bacteria 5485925
212 Ga0157372_10081685
213 SwRhRL2b_contig_3219372
214 JGI24736J21556_1001708
215 JGI25162J39368_1004404
216 JGI25164J39214_1001191
217 JGI25152J39213_1000034
218 JGI25150J39212_1000001
219 JGI25151J46595_10000001
220 JGI25165J46597_1001519
221 JGI25153J46596_10000001
222 rootH2_10002043
223 rootL2_10002528
224 rootL2_10006643
225 rootL2_10109787
226 rootH1_10000030
227 rootH1_10040420
228 rootH1_10055642
229 rootH1_10075987
230 Ga0055536_1000001
231 Ga0055530_10003109
232 Ga0065165_1002613
233 Ga0065714_10004118
234 Ga0065714_10016725
235 Ga0065714_10065033
236 Ga0065714_10067859
237 Ga0065704_10000224
238 Ga0070658_10000200
239 Ga0070658_10014639
240 Ga0070660_100063091
241 Ga0070661_100135103
242 Ga0070673_100008505
243 Ga0070663_100050151
244 Ga0070681_10022717
245 Ga0068853_100050499
246 Ga0070665_100000010
247 Ga0068855_100000204
248 Ga0068855_100000856
249 Ga0068855_100018939
250 Ga0068856_100000023
251 Ga0068856_100014589
252 Ga0068856_100033008
253 Ga0075428_100004617
254 Ga0105240_10000219
255 Ga0105240_10147360
256 Ga0105240_10175083
257 Ga0105240_10204272
258 Ga0111539_10002785
259 Ga0111539_10036711
260 Ga0105245_10040385
261 Ga0105241_10032128
262 Ga0105237_10001062
263 Ga0105237_10005415
264 Ga0105237_10007996
265 Ga0105238_10067266
266 Ga0105238_10080237
267 Ga0105239_10000007
268 Ga0105239_10000011
269 Ga0105239_10003976
270 Ga0105239_10011878
271 Ga0157373_10003564
272 Ga0157373_10004594
273 Ga0157373_10014188
274 Ga0157371_10000922
275 Ga0157371_10012978
276 Ga0157371_10015661
277 Ga0157371_10017599
278 Ga0157371_10020060
279 Ga0157370_10000531
280 Ga0157370_10032083
281 Ga0157370_10041933
282 Ga0157370_10052746
283 Ga0157370_10064472
284 Ga0157369_10000402
285 Ga0157369_10001883
286 Ga0157374_10010145
287 Ga0163162_10000082
288 Ga0163162_10000558
289 Ga0157372_10000026
290 Ga0157375_10067625
291 Ga0182008_10000006
292 Ga0182008_10000769
293 Ga0182006_1000878
294 Ga0182006_1002059
295 Ga0182006_1002552
296 Ga0182007_10000033
297 Ga0183373_1001
298 Ga0163161_10000085
299 Ga0163161_10003986
300 Ga0163161_10069652
301 Ga0163161_10119849
302 Ga0213872_10020247
303 Ga0207427_100137
304 Ga0209437_100112
305 Ga0207425_1000002
306 Ga0209026_1000490
307 Ga0209026_1003256
308 Ga0209129_1000002
309 Ga0209233_1000126
310 Ga0209455_1001554
311 Ga0209676_1000008
312 Ga0209025_1000004
313 Ga0209758_1000006
314 Ga0209050_1000055
315 Ga0209050_1002341
316 Ga0207705_10000257
317 Ga0207654_10001575
318 Ga0207695_10000048
319 Ga0207695_10040569
320 Ga0207695_10080912
321 Ga0207695_10103977
322 Ga0207671_10002343
323 Ga0207671_10003081
324 Ga0207671_10004704
325 Ga0207657_10074325
326 Ga0207652_10098492
327 Ga0207690_10078262
328 Ga0207667_10000095
329 Ga0207667_10002951
330 Ga0207667_10040492
331 Ga0207678_10071559
332 Ga0207702_10000258
333 Ga0207702_10004912
334 Ga0207702_10046444
335 Ga0207428_10016538
336 Ga0268266_10000032
337 Ga0307517_10021527
338 Ga0307515_10146992
339 Ga0265327_10050307
340 Ga0307509_10062403
341 Ga0307509_10231757
342 Ga0307408_100001461
343 Ga0307408_100002696
344 Ga0307408_100004451
345 Ga0307408_100040036
346 Ga0307405_10000003
347 Ga0307405_10028145
348 Ga0307405_10028258
349 Ga0307407_10000010
350 Ga0307412_10000055
351 Ga0307412_10009223
352 Ga0307412_10086802
353 Ga0307416_100000014
354 Ga0307416_100036967
355 Ga0307414_10000235
356 Ga0307414_10001118
357 Ga0307414_10057428
358 Ga0307414_10078863
359 Ga0307414_10087152
360 Ga0307510_10001525
361 Ga0395899_0000034
362 Ga0395899_0000055
363 Ga0395905_0000355
364 Ga0395901_0018834
365 Ga0436361_0589719
366 Ga0451577_0000043
367 Ga0451577_0013580
368 Ga0453683_0000133
369 Ga0453684_0000133
370 Ga0453684_0038290
371 Ga0453684_0043536
372 Ga0451576_0000097
373 Ga0451576_0002108
374 Ga0451576_0016159
375 Ga0495638_0000005
376 Ga0495651_0110536
377 Ga0495610_0000051
378 Ga0495610_0063911
379 Ga0495631_0005234
380 Ga0495633_0024816
381 Ga0495625_0058178
382 Ga0495687_001143
383 Ga0501223_000184
384 Ga0501236_000068
385 Ga0501225_0007747
386 Ga0501264_001788
387 nmdc:mga08y16_21866_c1
388 Ga0500635_0017665
389 Ga0500651_0000279
390 Ga0500616_0000003
391 Ga0500616_0045947
392 Ga0500622_0000018
393 Ga0500622_0000021
394 Ga0500622_0001711
395 2586209583
396 2738760272
397 2738852120
398 2739302394
399 2739589703
400 2739616485
401 2739647132
402 2740033570
403 2776612322
404 2819546659
405 2842725353
406 2842912630
407 2849281889
408 2852625183
409 2857629610
410 2884636084
411 2884934198
412 2896319577
413 2898713380
414 2902052352
415 2904446797
416 2919189544
417 2919696228
418 2939667770
419 2946002271
420 2954019170
421 2977233833

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01225

Mur_ligase

Mur ligase family, catalytic domain

33

138

0.96

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

335

460

0.86

PF08245

Mur_ligase_M

Mur ligase middle domain

143

313

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bvb-assembly1.cif.gz_A crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis in complex with udp-n-acetylglucosamine 0.9036 1 450
7bvb-assembly1.cif.gz_A crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis in complex with udp-n-acetylglucosamine 0.8998 1 450
7bva-assembly2.cif.gz_B crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis 0.8992 1 450
1gqy-assembly1.cif.gz_A murc - crystal structure of the enzyme from haemophilus influenzae complexed with amppcp 0.8975 2 450
7bva-assembly2.cif.gz_B crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis 0.8954 1 450
ID Description Score Start End Superfamily
af_P9WJL7_329_485_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9226 308 448 3.90.190.20
af_P9WJL7_104_328_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9188 103 307 3.40.1190.10
4hv4A03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9175 310 446 3.90.190.20
af_Q2FXJ0_297_436_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9086 310 449 3.90.190.20
1gqqB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9079 11 99 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A069CX51-F1-model_v4 UDP-N-acetylmuramate-alanine ligase 0.9779 286 451 GO:0009058
GO:0016881
AF-A0A0A2DZU8-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) 0.9684 5 450 GO:0005524
GO:0005737
GO:0008360
GO:0008763
GO:0009252
GO:0016020
GO:0051301
GO:0071555
AF-A0A1Z5HKG9-F1-model_v4 deleted 0.9678 90 410
AF-A0A3B9AQY8-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase 0.9659 201 450 GO:0005524
GO:0009058
GO:0016881
AF-A0A379MTE4-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) 0.9643 278 450 GO:0008763
GO:0009058

Map