F318169

General Info

Members Datasets Scaffolds Average Seq Length
208 137 208 315

Family's Representative Sequence

Representative Sequence 3300044694|Ga0466963_0144880|Ga0466963_0144880_32_1162
Length 368
Sequence MPRQFKPPKKLVQPARELMPDRMFETRSDAWAAVGLSVDYSSRAVKRAQREAMILIPLFIAIVVVYEKRESIFGPSDTNPHSAVYRHSHYYQLLDPKHGSLTLPLQIVVALALVIIGWAIARDFGRFAGPTFLRRMDPATAGTVGFVVRLLLLGVAGANLRAIAVGGGFAAVIVGLAAQQTLGNCFAGMVLLSARPFRVGERVRLQAGATGGVVEGIVSSLGLLYTTLTAGADQIMIPNSVVLAAVVVPLREPEPIDVRVRLSHGVRPTQVQAILDNEIATPTRSKAVLLEEVDGDDVVVRIQATPERADDGAKLADEVMAALTSVTGEHEVQAARERAAGGDGRAGTASPGDGQQPQRRSRTDRVRR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009986 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
28 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
44 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
45 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
46 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
47 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
48 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
49 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
57 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
58 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
69 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
72 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
73 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
80 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
81 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
82 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
83 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
84 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
85 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
86 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
87 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
88 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
89 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
94 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
95 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
96 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
97 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
98 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
103 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
104 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
119 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
120 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
121 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
122 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
128 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
129 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
133 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
134 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.33
Nodule 0
Rhizoplane 4.81
Rhizosphere 76.44
Stem 0
Stem Tuber 0
Unclassified 14.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10027802 3300003203 Bacteria 2163
2 Ga0070683_100183028 3300005329 Bacteria 1989
3 Ga0070683_100305830 3300005329 Bacteria 1513
4 Ga0070683_100384231 3300005329 Bacteria 1338
5 Ga0070682_100086047 3300005337 Bacteria 2046
6 Ga0070660_100031148 3300005339 Bacteria 4004
7 Ga0070692_10001323 3300005345 Bacteria 8913
8 Ga0070669_100010079 3300005353 Bacteria 6720
9 Ga0070659_100000037 3300005366 Bacteria 113379
10 Ga0070714_100000091 3300005435 Bacteria 76316
11 Ga0070714_100007748 3300005435 Bacteria 8368
12 Ga0070714_100019772 3300005435 Bacteria 5493
13 Ga0070714_100031228 3300005435 Bacteria 4443
14 Ga0070714_100031543 3300005435 Bacteria 4423
15 Ga0070714_100223942 3300005435 Bacteria 1730
16 Ga0070714_100326540 3300005435 Unclassified 1436
17 Ga0070713_100304344 3300005436 Bacteria 1468
18 Ga0070713_100430357 3300005436 Bacteria 1236
19 Ga0070710_10000004 3300005437 Bacteria 270399
20 Ga0070710_10080595 3300005437 Bacteria 1899
21 Ga0070665_100001101 3300005548 Bacteria 33337
22 Ga0068856_100112952 3300005614 Bacteria 2715
23 Ga0081538_10000473 3300005981 Bacteria 45178
24 Ga0081539_10001978 3300005985 Bacteria 31196
25 Ga0070717_10000019 3300006028 Bacteria 178051
26 Ga0070717_10006499 3300006028 Bacteria 8604
27 Ga0070717_10018999 3300006028 Bacteria 5382
28 Ga0070717_10045532 3300006028 Bacteria 3587
29 Ga0070717_10100636 3300006028 Bacteria 2454
30 Ga0075365_10001893 3300006038 Bacteria 9855
31 Ga0075365_10002061 3300006038 Bacteria 9580
32 Ga0075365_10019777 3300006038 Bacteria 4163
33 Ga0075364_10076998 3300006051 Unclassified 2201
34 Ga0075431_100000608 3300006847 Bacteria 30234
35 Ga0075434_100022260 3300006871 Bacteria 6173
36 Ga0075429_100117911 3300006880 Bacteria 2320
37 Ga0105240_10187077 3300009093 Bacteria 2438
38 Ga0111539_10002937 3300009094 Bacteria 22601
39 Ga0114129_10178940 3300009147 Bacteria 2887
40 Ga0105033_103725 3300009986 Bacteria 1289
41 Ga0105246_10024170 3300011119 Bacteria 3944
42 Ga0157372_10593692 3300013307 Bacteria 1291
43 Ga0213874_10003347 3300021377 Bacteria 3547
44 Ga0213874_10004693 3300021377 Bacteria 3141
45 Ga0213874_10026658 3300021377 Bacteria 1638
46 Ga0213876_10003529 3300021384 Bacteria 8918
47 Ga0213876_10008007 3300021384 Bacteria 5729
48 Ga0213876_10019327 3300021384 Bacteria 3599
49 Ga0213875_10000080 3300021388 Bacteria 114342
50 Ga0213875_10012303 3300021388 Bacteria 4231
51 Ga0213875_10022000 3300021388 Bacteria 3052
52 Ga0213875_10024843 3300021388 Bacteria 2856
53 Ga0213875_10028171 3300021388 Bacteria 2670
54 Ga0207692_10000002 3300025898 Bacteria 453100
55 Ga0207692_10009127 3300025898 Bacteria 4129
56 Ga0207699_10009601 3300025906 Bacteria 4826
57 Ga0207695_10228525 3300025913 Bacteria 1766
58 Ga0207693_10003580 3300025915 Bacteria 13279
59 Ga0207693_10067333 3300025915 Bacteria 2804
60 Ga0207663_10025402 3300025916 Bacteria 3424
61 Ga0207657_10044472 3300025919 Bacteria 3903
62 Ga0207681_10005242 3300025923 Bacteria 7962
63 Ga0207687_10124649 3300025927 Bacteria 1932
64 Ga0207700_10305343 3300025928 Unclassified 1375
65 Ga0207664_10000004 3300025929 Bacteria 493014
66 Ga0207664_10003742 3300025929 Bacteria 10213
67 Ga0207664_10020513 3300025929 Bacteria 4899
68 Ga0207664_10051195 3300025929 Bacteria 3260
69 Ga0207664_10409400 3300025929 Bacteria 1207
70 Ga0207690_10000404 3300025932 Bacteria 28563
71 Ga0207665_10081281 3300025939 Bacteria 2231
72 Ga0207665_10235481 3300025939 Bacteria 1347
73 Ga0207661_10092108 3300025944 Bacteria 2526
74 Ga0207661_10200213 3300025944 Bacteria 1755
75 Ga0207428_10014569 3300027907 Bacteria 6819
76 Ga0265337_1004915 3300028556 Bacteria 5441
77 Ga0265326_10011538 3300028558 Unclassified 2601
78 Ga0265319_1000464 3300028563 Bacteria 28716
79 Ga0265318_10002032 3300028577 Bacteria 11174
80 Ga0265322_10050377 3300028654 Bacteria 1182
81 Ga0265336_10000002 3300028666 Bacteria 830172
82 Ga0265338_10000001 3300028800 Bacteria 1177449
83 Ga0265324_10000749 3300029957 Bacteria 21583
84 Ga0265340_10000001 3300031247 Bacteria 1647668
85 Ga0265327_10035215 3300031251 Bacteria 2770
86 Ga0265316_10017325 3300031344 Bacteria 6233
87 Ga0265342_10124676 3300031712 Bacteria 1447
88 Ga0373953_0082739 3300035117 Bacteria 1336
89 Ga0373933_0041996 3300035724 Bacteria 2702
90 Ga0373937_0018611 3300036401 Bacteria 6204
91 Ga0395899_0016004 3300037312 Bacteria 5721
92 Ga0395900_0078269 3300037418 Bacteria 3397
93 Ga0395898_0038016 3300037466 Bacteria 4772
94 Ga0395898_0080217 3300037466 Bacteria 3148
95 Ga0395898_0260799 3300037466 Unclassified 1653
96 Ga0395905_0004292 3300037471 Bacteria 14862
97 Ga0436364_0140777 3300037853 Bacteria 47350
98 Ga0436364_0151788 3300037853 Bacteria 9637
99 Ga0436364_0326464 3300037853 Bacteria 2670
100 Ga0436364_0650781 3300037853 Bacteria 3927
101 Ga0436364_0778690 3300037853 Bacteria 4816
102 Ga0436364_1422191 3300037853 Bacteria 11143
103 Ga0436364_1504991 3300037853 Bacteria 7536
104 Ga0395901_0002331 3300038443 Bacteria 19347
105 Ga0395901_0037941 3300038443 Bacteria 4982
106 Ga0436365_0082981 3300039437 Bacteria 3408
107 Ga0436365_0291424 3300039437 Bacteria 4667
108 Ga0436365_0787356 3300039437 Bacteria 2514
109 Ga0436365_1168763 3300039437 Bacteria 90017
110 Ga0436365_1211880 3300039437 Bacteria 11484
111 Ga0436365_1493552 3300039437 Bacteria 25123
112 Ga0436365_1759251 3300039437 Bacteria 15123
113 Ga0436363_0107738 3300039450 Bacteria 3173
114 Ga0436363_0768640 3300039450 Bacteria 2376
115 Ga0436363_0993426 3300039450 Bacteria 8152
116 Ga0436363_0997531 3300039450 Bacteria 4079
117 Ga0466969_0123015 3300044656 Bacteria 1207
118 Ga0466972_0112950 3300044658 Bacteria 1283
119 Ga0466966_0058720 3300044684 Bacteria 2431
120 Ga0466966_0081138 3300044684 Bacteria 2020
121 Ga0466966_0136015 3300044684 Bacteria 1503
122 Ga0466963_0043511 3300044694 Bacteria 2953
123 Ga0466963_0078027 3300044694 Bacteria 2238
124 Ga0466963_0122553 3300044694 Bacteria 1790
125 Ga0466963_0144880 3300044694 Bacteria 1647
126 Ga0466963_0203250 3300044694 Bacteria 1386
127 Ga0466968_0069098 3300044735 Bacteria 1535
128 Ga0466970_0163026 3300044765 Bacteria 1233
129 Ga0466957_0011941 3300044842 Bacteria 5022
130 Ga0466957_0249211 3300044842 Unclassified 1180
131 Ga0466959_0012241 3300045049 Bacteria 6191
132 Ga0466959_0053022 3300045049 Bacteria 2967
133 Ga0466958_0038083 3300045836 Bacteria 2884
134 Ga0466958_0059130 3300045836 Bacteria 2332
135 Ga0466958_0089523 3300045836 Bacteria 1903
136 Ga0466958_0204041 3300045836 Bacteria 1258
137 Ga0466967_0006066 3300045976 Bacteria 8496
138 Ga0466967_0088063 3300045976 Bacteria 2816
139 Ga0466967_0512481 3300045976 Bacteria 1178
140 Ga0495603_0083991 3300046455 Bacteria 1865
141 Ga0495629_0144679 3300046459 Bacteria 1654
142 Ga0495641_0077701 3300046461 Bacteria 1488
143 Ga0495641_0136219 3300046461 Bacteria 1096
144 Ga0495651_0047489 3300046462 Bacteria 3319
145 Ga0495653_0048312 3300046463 Bacteria 3285
146 Ga0495580_0195205 3300046472 Bacteria 1396
147 Ga0495608_0155921 3300046511 Bacteria 1453
148 Ga0495640_0091479 3300046533 Bacteria 2007
149 Ga0495667_0194679 3300046559 Bacteria 1298
150 Ga0495657_0047227 3300046675 Bacteria 2911
151 Ga0495599_0128851 3300046678 Bacteria 1572
152 Ga0495623_0044327 3300046679 Bacteria 2827
153 Ga0495646_0024130 3300046680 Bacteria 3830
154 Ga0495600_0021529 3300046809 Bacteria 4130
155 Ga0495604_0166402 3300047317 Bacteria 1554
156 Ga0495674_0077358 3300047319 Bacteria 2861
157 Ga0495672_0018020 3300047320 Bacteria 4703
158 Ga0495676_0068458 3300047321 Bacteria 2743
159 Ga0495680_0081641 3300047322 Bacteria 2440
160 Ga0495680_0114806 3300047322 Unclassified 1993
161 Ga0495684_0016739 3300047471 Bacteria 5649
162 Ga0496100_0285965 3300048903 Bacteria 1230
163 Ga0496101_0008906 3300048904 Bacteria 6574
164 Ga0496102_0465811 3300048905 Bacteria 1185
165 Ga0496103_0097226 3300048906 Bacteria 1861
166 Ga0496104_0306731 3300048907 Bacteria 1500
167 Ga0496106_0013887 3300048909 Bacteria 5952
168 Ga0496107_0026937 3300048910 Bacteria 4079
169 Ga0496112_0007276 3300048915 Bacteria 9809
170 Ga0496115_0111904 3300048918 Bacteria 2243
171 Ga0496115_0407624 3300048918 Bacteria 1102
172 Ga0496121_0001001 3300048924 Bacteria 50528
173 Ga0501031_0010564 3300049568 Bacteria 6010
174 Ga0501032_0024787 3300049569 Bacteria 4138
175 Ga0501033_0077963 3300049570 Bacteria 2431
176 Ga0501034_0024738 3300049571 Bacteria 6108
177 Ga0501034_0591862 3300049571 Bacteria 1015
178 Ga0501036_0023396 3300049572 Bacteria 5205
179 Ga0501038_0071014 3300049574 Bacteria 2954
180 Ga0501039_0050454 3300049575 Bacteria 3219
181 Ga0501042_0069411 3300049578 Bacteria 2520
182 Ga0501043_0101148 3300049579 Bacteria 2265
183 Ga0501047_0350727 3300049581 Bacteria 1312
184 Ga0501048_0076059 3300049582 Bacteria 2369
185 Ga0501067_0003216 3300049583 Bacteria 8999
186 Ga0501068_0035785 3300049584 Bacteria 2965
187 Ga0501069_0026863 3300049585 Bacteria 3153
188 Ga0501069_0232099 3300049585 Bacteria 1074
189 Ga0501074_0059543 3300049590 Bacteria 2751
190 Ga0501079_0040599 3300049741 Bacteria 3590
191 Ga0501080_0019382 3300049742 Bacteria 6303
192 Ga0501083_0021782 3300049744 Bacteria 4451
193 Ga0501035_0077793 3300049822 Bacteria 2931
194 Ga0501045_0051312 3300049824 Bacteria 3011
195 nmdc:mga00v17_13871_c1 3300050491 Bacteria 4483
196 nmdc:mga0yw44_119047_c1 3300050492 Bacteria 1700
197 nmdc:mga0yw44_145664_c1 3300050492 Unclassified 1542
198 nmdc:mga09592_113439_c1 3300050508 Bacteria 2326
199 nmdc:mga08y16_10856_c1 3300050511 Bacteria 9564
200 nmdc:mga0n895_78499_c1 3300050512 Bacteria 3286
201 Ga0495595_0008796 3300053084 Bacteria 4159
202 Ga0495619_0034042 3300053085 Bacteria 3311
203 Ga0495619_0178800 3300053085 Bacteria 1468
204 Ga0500556_0000226 3300053104 Bacteria 45612
205 Ga0500616_0003449 3300053153 Bacteria 12062
206 Ga0501082_0009736 3300060353 Bacteria 8279
207 Ga0501082_0350167 3300060353 Bacteria 1288
208 Ga0466962_0014235 3300061719 Bacteria 3833

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300021377 Ga0213874_10026658 Ga0213874_100266581 252
2 3300039450 Ga0436363_0107738 Ga0436363_0107738_1952_3025 252
3 3300021377 Ga0213874_10003347 Ga0213874_100033471 258
4 3300039450 Ga0436363_0997531 Ga0436363_0997531_846_1877 258
5 3300025929 Ga0207664_10409400 Ga0207664_104094001 264
6 3300044684 Ga0466966_0136015 Ga0466966_0136015_104_1219 264
7 3300044694 Ga0466963_0078027 Ga0466963_0078027_464_1579 264
8 3300045836 Ga0466958_0204041 Ga0466958_0204041_126_1241 264
9 3300045976 Ga0466967_0088063 Ga0466967_0088063_17_1132 264
10 3300021388 Ga0213875_10024843 Ga0213875_100248432 266
11 3300037853 Ga0436364_0778690 Ga0436364_0778690_917_2005 266
12 3300039437 Ga0436365_1759251 Ga0436365_1759251_5559_6581 268
13 3300005436 Ga0070713_100430357 Ga0070713_1004303571 270
14 3300006028 Ga0070717_10045532 Ga0070717_100455323 270
15 3300049574 Ga0501038_0071014 Ga0501038_0071014_29_907 272
16 3300005435 Ga0070714_100031228 Ga0070714_1000312283 273
17 3300025929 Ga0207664_10051195 Ga0207664_100511952 273
18 3300005353 Ga0070669_100010079 Ga0070669_1000100793 274
19 3300025923 Ga0207681_10005242 Ga0207681_100052426 274
20 3300037466 Ga0395898_0260799 Ga0395898_0260799_550_1542 274
21 3300006028 Ga0070717_10018999 Ga0070717_100189992 275
22 3300009093 Ga0105240_10187077 Ga0105240_101870772 277
23 3300025913 Ga0207695_10228525 Ga0207695_102285252 277
24 3300044765 Ga0466970_0163026 Ga0466970_0163026_229_1206 277
25 3300005435 Ga0070714_100007748 Ga0070714_1000077485 278
26 3300005435 Ga0070714_100019772 Ga0070714_1000197722 278
27 3300021388 Ga0213875_10028171 Ga0213875_100281713 278
28 3300025929 Ga0207664_10003742 Ga0207664_100037425 278
29 3300037853 Ga0436364_0650781 Ga0436364_0650781_2489_3442 278
30 3300039437 Ga0436365_0291424 Ga0436365_0291424_1739_2692 278
31 3300005329 Ga0070683_100384231 Ga0070683_1003842312 282
32 3300005981 Ga0081538_10000473 Ga0081538_1000047316 282
33 3300045049 Ga0466959_0012241 Ga0466959_0012241_2459_3460 282
34 3300045836 Ga0466958_0059130 Ga0466958_0059130_156_1157 282
35 3300006028 Ga0070717_10006499 Ga0070717_100064996 283
36 3300006038 Ga0075365_10001893 Ga0075365_1000189312 283
37 3300046472 Ga0495580_0195205 Ga0495580_0195205_480_1385 283
38 3300050492 nmdc:mga0yw44_145664_c1 nmdc:mga0yw44_145664_c1_471_1400 283
39 3300006028 Ga0070717_10000019 Ga0070717_1000001982 284
40 3300005435 Ga0070714_100031543 Ga0070714_1000315435 285
41 3300005435 Ga0070714_100326540 Ga0070714_1003265402 286
42 3300021384 Ga0213876_10019327 Ga0213876_100193272 286
43 3300039437 Ga0436365_1211880 Ga0436365_1211880_1337_2392 286
44 3300005435 Ga0070714_100000091 Ga0070714_10000009120 287
45 3300025929 Ga0207664_10000004 Ga0207664_10000004400 287
46 3300044694 Ga0466963_0122553 Ga0466963_0122553_682_1767 287
47 3300044694 Ga0466963_0144880 Ga0466963_0144880_32_1162 288
48 3300025927 Ga0207687_10124649 Ga0207687_101246493 289
49 3300006038 Ga0075365_10002061 Ga0075365_100020617 290
50 3300050491 nmdc:mga00v17_13871_c1 nmdc:mga00v17_13871_c1_16_945 290
51 3300050492 nmdc:mga0yw44_119047_c1 nmdc:mga0yw44_119047_c1_564_1493 290
52 3300006051 Ga0075364_10076998 Ga0075364_100769982 291
53 3300021388 Ga0213875_10000080 Ga0213875_1000008068 291
54 3300037853 Ga0436364_0140777 Ga0436364_0140777_8252_9211 291
55 3300005329 Ga0070683_100305830 Ga0070683_1003058301 292
56 3300025944 Ga0207661_10092108 Ga0207661_100921082 292
57 3300049585 Ga0501069_0232099 Ga0501069_0232099_59_1012 293
58 3300005437 Ga0070710_10000004 Ga0070710_10000004230 294
59 3300006028 Ga0070717_10100636 Ga0070717_101006362 294
60 3300006847 Ga0075431_100000608 Ga0075431_1000006084 294
61 3300006871 Ga0075434_100022260 Ga0075434_1000222604 294
62 3300009094 Ga0111539_10002937 Ga0111539_1000293721 294
63 3300009147 Ga0114129_10178940 Ga0114129_101789403 294
64 3300009986 Ga0105033_103725 Ga0105033_1037252 294
65 3300025898 Ga0207692_10000002 Ga0207692_1000000252 294
66 3300025928 Ga0207700_10305343 Ga0207700_103053431 294
67 3300027907 Ga0207428_10014569 Ga0207428_100145692 294
68 3300028556 Ga0265337_1004915 Ga0265337_10049154 294
69 3300028558 Ga0265326_10011538 Ga0265326_100115382 294
70 3300028563 Ga0265319_1000464 Ga0265319_100046415 294
71 3300028577 Ga0265318_10002032 Ga0265318_100020329 294
72 3300028666 Ga0265336_10000002 Ga0265336_10000002615 294
73 3300028800 Ga0265338_10000001 Ga0265338_10000001199 294
74 3300029957 Ga0265324_10000749 Ga0265324_100007496 294
75 3300031247 Ga0265340_10000001 Ga0265340_10000001198 294
76 3300031344 Ga0265316_10017325 Ga0265316_100173254 294
77 3300031712 Ga0265342_10124676 Ga0265342_101246761 294
78 3300037853 Ga0436364_1422191 Ga0436364_1422191_3598_4593 294
79 3300039437 Ga0436365_0082981 Ga0436365_0082981_1964_2959 294
80 3300039437 Ga0436365_1493552 Ga0436365_1493552_15358_16269 294
81 3300044656 Ga0466969_0123015 Ga0466969_0123015_216_1133 294
82 3300044658 Ga0466972_0112950 Ga0466972_0112950_27_956 294
83 3300044694 Ga0466963_0043511 Ga0466963_0043511_1813_2772 294
84 3300044694 Ga0466963_0203250 Ga0466963_0203250_158_1117 294
85 3300044842 Ga0466957_0011941 Ga0466957_0011941_2527_3441 294
86 3300044842 Ga0466957_0249211 Ga0466957_0249211_175_1134 294
87 3300045049 Ga0466959_0053022 Ga0466959_0053022_1266_2225 294
88 3300045836 Ga0466958_0038083 Ga0466958_0038083_254_1213 294
89 3300045836 Ga0466958_0089523 Ga0466958_0089523_281_1195 294
90 3300045976 Ga0466967_0006066 Ga0466967_0006066_6124_7083 294
91 3300046461 Ga0495641_0136219 Ga0495641_0136219_80_1021 294
92 3300046533 Ga0495640_0091479 Ga0495640_0091479_16_930 294
93 3300048903 Ga0496100_0285965 Ga0496100_0285965_284_1213 294
94 3300048904 Ga0496101_0008906 Ga0496101_0008906_297_1226 294
95 3300048905 Ga0496102_0465811 Ga0496102_0465811_223_1152 294
96 3300048906 Ga0496103_0097226 Ga0496103_0097226_784_1713 294
97 3300048909 Ga0496106_0013887 Ga0496106_0013887_760_1689 294
98 3300048910 Ga0496107_0026937 Ga0496107_0026937_917_1846 294
99 3300048918 Ga0496115_0407624 Ga0496115_0407624_87_1016 294
100 3300050511 nmdc:mga08y16_10856_c1 nmdc:mga08y16_10856_c1_2048_3004 294
101 3300050512 nmdc:mga0n895_78499_c1 nmdc:mga0n895_78499_c1_1504_2460 294
102 3300053085 Ga0495619_0034042 Ga0495619_0034042_124_1065 294
103 3300061719 Ga0466962_0014235 Ga0466962_0014235_2270_3184 294
104 3300046455 Ga0495603_0083991 Ga0495603_0083991_452_1396 295
105 3300048924 Ga0496121_0001001 Ga0496121_0001001_20544_21515 295
106 3300006038 Ga0075365_10019777 Ga0075365_100197774 296
107 3300037312 Ga0395899_0016004 Ga0395899_0016004_4216_5145 296
108 3300037418 Ga0395900_0078269 Ga0395900_0078269_1653_2582 296
109 3300037466 Ga0395898_0038016 Ga0395898_0038016_1425_2354 296
110 3300037466 Ga0395898_0080217 Ga0395898_0080217_480_1451 296
111 3300037471 Ga0395905_0004292 Ga0395905_0004292_339_1268 296
112 3300038443 Ga0395901_0002331 Ga0395901_0002331_7997_8926 296
113 3300038443 Ga0395901_0037941 Ga0395901_0037941_1431_2360 296
114 3300045976 Ga0466967_0512481 Ga0466967_0512481_171_1139 296
115 3300053104 Ga0500556_0000226 Ga0500556_0000226_29484_30440 296
116 3300053153 Ga0500616_0003449 Ga0500616_0003449_2961_3917 296
117 3300003203 JGI25406J46586_10027802 JGI25406J46586_100278022 297
118 3300005329 Ga0070683_100183028 Ga0070683_1001830281 297
119 3300005337 Ga0070682_100086047 Ga0070682_1000860472 297
120 3300005339 Ga0070660_100031148 Ga0070660_1000311482 297
121 3300005345 Ga0070692_10001323 Ga0070692_100013238 297
122 3300005366 Ga0070659_100000037 Ga0070659_10000003711 297
123 3300005435 Ga0070714_100223942 Ga0070714_1002239422 297
124 3300005436 Ga0070713_100304344 Ga0070713_1003043441 297
125 3300005437 Ga0070710_10080595 Ga0070710_100805952 297
126 3300005548 Ga0070665_100001101 Ga0070665_10000110135 297
127 3300005614 Ga0068856_100112952 Ga0068856_1001129522 297
128 3300005985 Ga0081539_10001978 Ga0081539_1000197827 297
129 3300006880 Ga0075429_100117911 Ga0075429_1001179112 297
130 3300011119 Ga0105246_10024170 Ga0105246_100241702 297
131 3300013307 Ga0157372_10593692 Ga0157372_105936921 297
132 3300021377 Ga0213874_10004693 Ga0213874_100046933 297
133 3300021384 Ga0213876_10003529 Ga0213876_100035297 297
134 3300021384 Ga0213876_10008007 Ga0213876_100080072 297
135 3300021388 Ga0213875_10012303 Ga0213875_100123034 297
136 3300021388 Ga0213875_10022000 Ga0213875_100220003 297
137 3300025898 Ga0207692_10009127 Ga0207692_100091272 297
138 3300025906 Ga0207699_10009601 Ga0207699_100096013 297
139 3300025915 Ga0207693_10003580 Ga0207693_1000358011 297
140 3300025915 Ga0207693_10067333 Ga0207693_100673332 297
141 3300025916 Ga0207663_10025402 Ga0207663_100254021 297
142 3300025919 Ga0207657_10044472 Ga0207657_100444724 297
143 3300025929 Ga0207664_10020513 Ga0207664_100205133 297
144 3300025932 Ga0207690_10000404 Ga0207690_1000040416 297
145 3300025939 Ga0207665_10081281 Ga0207665_100812812 297
146 3300025939 Ga0207665_10235481 Ga0207665_102354811 297
147 3300025944 Ga0207661_10200213 Ga0207661_102002132 297
148 3300028654 Ga0265322_10050377 Ga0265322_100503772 297
149 3300031251 Ga0265327_10035215 Ga0265327_100352153 297
150 3300035117 Ga0373953_0082739 Ga0373953_0082739_62_1024 297
151 3300035724 Ga0373933_0041996 Ga0373933_0041996_1699_2661 297
152 3300036401 Ga0373937_0018611 Ga0373937_0018611_334_1296 297
153 3300037853 Ga0436364_0151788 Ga0436364_0151788_2546_3568 297
154 3300037853 Ga0436364_0326464 Ga0436364_0326464_1082_2050 297
155 3300037853 Ga0436364_1504991 Ga0436364_1504991_1861_2805 297
156 3300039437 Ga0436365_0787356 Ga0436365_0787356_1241_2191 297
157 3300039437 Ga0436365_1168763 Ga0436365_1168763_2032_3054 297
158 3300039450 Ga0436363_0768640 Ga0436363_0768640_1344_2297 297
159 3300039450 Ga0436363_0993426 Ga0436363_0993426_2026_3048 297
160 3300044684 Ga0466966_0058720 Ga0466966_0058720_867_1841 297
161 3300044684 Ga0466966_0081138 Ga0466966_0081138_277_1350 297
162 3300044735 Ga0466968_0069098 Ga0466968_0069098_112_1185 297
163 3300046459 Ga0495629_0144679 Ga0495629_0144679_310_1272 297
164 3300046461 Ga0495641_0077701 Ga0495641_0077701_116_1078 297
165 3300046462 Ga0495651_0047489 Ga0495651_0047489_1485_2447 297
166 3300046463 Ga0495653_0048312 Ga0495653_0048312_189_1151 297
167 3300046511 Ga0495608_0155921 Ga0495608_0155921_280_1242 297
168 3300046559 Ga0495667_0194679 Ga0495667_0194679_148_1110 297
169 3300046675 Ga0495657_0047227 Ga0495657_0047227_1796_2758 297
170 3300046678 Ga0495599_0128851 Ga0495599_0128851_395_1357 297
171 3300046679 Ga0495623_0044327 Ga0495623_0044327_1651_2613 297
172 3300046680 Ga0495646_0024130 Ga0495646_0024130_635_1597 297
173 3300046809 Ga0495600_0021529 Ga0495600_0021529_1371_2333 297
174 3300047317 Ga0495604_0166402 Ga0495604_0166402_569_1531 297
175 3300047319 Ga0495674_0077358 Ga0495674_0077358_193_1155 297
176 3300047320 Ga0495672_0018020 Ga0495672_0018020_3657_4613 297
177 3300047321 Ga0495676_0068458 Ga0495676_0068458_1729_2694 297
178 3300047322 Ga0495680_0081641 Ga0495680_0081641_290_1252 297
179 3300047322 Ga0495680_0114806 Ga0495680_0114806_830_1792 297
180 3300047471 Ga0495684_0016739 Ga0495684_0016739_2691_3653 297
181 3300048907 Ga0496104_0306731 Ga0496104_0306731_44_1006 297
182 3300048915 Ga0496112_0007276 Ga0496112_0007276_8685_9647 297
183 3300048918 Ga0496115_0111904 Ga0496115_0111904_497_1459 297
184 3300049568 Ga0501031_0010564 Ga0501031_0010564_2382_3371 297
185 3300049569 Ga0501032_0024787 Ga0501032_0024787_2582_3571 297
186 3300049570 Ga0501033_0077963 Ga0501033_0077963_345_1334 297
187 3300049571 Ga0501034_0024738 Ga0501034_0024738_1129_2118 297
188 3300049571 Ga0501034_0591862 Ga0501034_0591862_13_969 297
189 3300049572 Ga0501036_0023396 Ga0501036_0023396_15_968 297
190 3300049575 Ga0501039_0050454 Ga0501039_0050454_1402_2391 297
191 3300049578 Ga0501042_0069411 Ga0501042_0069411_1298_2287 297
192 3300049579 Ga0501043_0101148 Ga0501043_0101148_178_1167 297
193 3300049581 Ga0501047_0350727 Ga0501047_0350727_15_968 297
194 3300049582 Ga0501048_0076059 Ga0501048_0076059_234_1223 297
195 3300049583 Ga0501067_0003216 Ga0501067_0003216_4937_5926 297
196 3300049584 Ga0501068_0035785 Ga0501068_0035785_1115_2104 297
197 3300049585 Ga0501069_0026863 Ga0501069_0026863_537_1526 297
198 3300049590 Ga0501074_0059543 Ga0501074_0059543_1171_2160 297
199 3300049741 Ga0501079_0040599 Ga0501079_0040599_1233_2222 297
200 3300049742 Ga0501080_0019382 Ga0501080_0019382_1105_2094 297
201 3300049744 Ga0501083_0021782 Ga0501083_0021782_1562_2551 297
202 3300049822 Ga0501035_0077793 Ga0501035_0077793_14_967 297
203 3300049824 Ga0501045_0051312 Ga0501045_0051312_986_1975 297
204 3300050508 nmdc:mga09592_113439_c1 nmdc:mga09592_113439_c1_967_1905 297
205 3300053084 Ga0495595_0008796 Ga0495595_0008796_1237_2199 297
206 3300053085 Ga0495619_0178800 Ga0495619_0178800_61_1023 297
207 3300060353 Ga0501082_0009736 Ga0501082_0009736_4771_5760 297
208 3300060353 Ga0501082_0350167 Ga0501082_0350167_308_1270 297

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00924

MS_channel_2nd

Mechanosensitive ion channel, beta-domain

180

249

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x4j-assembly1.cif.gz_A crystal structure of orf137 from pyrobaculum spherical virus 0.8207 159 213
3bpd-assembly2.cif.gz_I crystal structure of an uncharacterized protein (o28723_arcfu) from archaeoglobus fulgidus 0.794 218 291
4y91-assembly1.cif.gz_F crystal structure of a thermotoga maritima hfq homolog 0.7805 165 212
1kq1-assembly1.cif.gz_H 1.55 a crystal structure of the pleiotropic translational regulator, hfq 0.7474 165 213
4x9c-assembly1.cif.gz_C 1.4a crystal structure of hfq from methanococcus jannaschii 0.7451 159 201
ID Description Score Start End Superfamily
af_O74839_657_709_2.30.30.60 Mainly Beta;Roll;SH3 type barrels.; 0.8648 161 211 2.30.30.60
af_O74839_657_709_2.30.30.60 Mainly Beta;Roll;SH3 type barrels.; 0.8211 161 211 2.30.30.60
2x4jA01 Mainly Beta;Roll;SH3 type barrels.; 0.8207 159 213 2.30.30.600
3qsuF00 Mainly Beta;Roll;SH3 type barrels.; 0.758 165 211 2.30.30.100
af_P45577_182_232_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.7465 160 201 2.30.30.30
ID Description Score Start End GO Terms
AF-A0A1W0E3C3-F1-model_v4 Mechanosensitive ion channel MscS domain-containing protein 0.8955 148 214 GO:0016020
GO:0055085
AF-A0A7W1RBU4-F1-model_v4 Mechanosensitive ion channel family protein 0.7718 6 292 GO:0008381
GO:0016020
AF-A0A5B8U4Y0-F1-model_v4 Mechanosensitive ion channel family protein 0.7652 24 291 GO:0008381
GO:0016020
AF-A0A538KB67-F1-model_v4 Mechanosensitive ion channel family protein 0.7636 7 293 GO:0008381
GO:0016020
AF-A0A660L3D4-F1-model_v4 Mechanosensitive ion channel-like protein 0.7634 20 291 GO:0008381
GO:0016020

Feature Viewer

pLDDT pTM Quality
79.94 0.54 Medium
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Predicted Structure (AlphaFold2)

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