F318101

General Info

Members Datasets Scaffolds Average Seq Length
208 142 416 127

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0096170|Ga0395905_0096170_1104_1535
Length 143
Sequence LTIVPLGFPQRNIHPFAPVLKLQPDRFDVQAISGYGPGWVGVNGEKITHSVIVASSGERIEWHASRFEDLGPEHFAQLAKVGAEVAIFGSGSRIRFPKPAWLKPLIDASVGLETMDTAAACRTYNILAQEGRRVAVALLLEDQ

Samples

Sample ID Description Type Environment
1 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
2 3300003347 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
20 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
21 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
22 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
23 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
38 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
65 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
66 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
67 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
68 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
71 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
72 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
75 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
76 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
84 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
85 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
86 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
87 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
88 3300042116 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 Metagenome Rhizosphere
89 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
90 3300042123 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_082716_2228 Metagenome Rhizosphere
91 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
94 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
95 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
96 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
97 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
98 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
99 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
102 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
109 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
110 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
111 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
112 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
113 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
114 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
115 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
116 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
129 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
130 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
131 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
132 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
133 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
134 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
135 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
136 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
137 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
138 2643221609 Acidovorax sp. Root217 Isolate Unclassified
139 2643221611 Acidovorax sp. Root219 Isolate Unclassified
140 2643221660 Methylibium sp. Root1272 Isolate Unclassified
141 2842747753 Variovorax sp. R-72060 Isolate Unclassified
142 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.6
Metatranscriptomes 0
Isolates 2.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.73
Nodule 0
Rhizoplane 1.44
Rhizosphere 86.06
Stem 0
Stem Tuber 0
Unclassified 0.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395905_0096170 3300037471 Bacteria 2780
2 JGI26128J50194_1001822 3300003347 Bacteria 1376
3 JGI26128J50194_1001979 3300003347 Bacteria 1326
4 Ga0070658_10242202 3300005327 Bacteria 1529
5 Ga0070690_100435220 3300005330 Bacteria 969
6 Ga0070670_100603889 3300005331 Bacteria 982
7 Ga0070677_10103034 3300005333 Bacteria 1262
8 Ga0068868_100416431 3300005338 Bacteria 1162
9 Ga0068868_100462170 3300005338 Bacteria 1106
10 Ga0070668_100154070 3300005347 Bacteria 1861
11 Ga0070669_100061546 3300005353 Bacteria 2759
12 Ga0070671_100792004 3300005355 Bacteria 825
13 Ga0070659_101485356 3300005366 Bacteria 604
14 Ga0070678_100032461 3300005456 Bacteria 3614
15 Ga0070662_100281524 3300005457 Bacteria 1346
16 Ga0070672_100091348 3300005543 Bacteria 2456
17 Ga0068855_100306507 3300005563 Bacteria 1758
18 Ga0068854_100519322 3300005578 Bacteria 1006
19 Ga0068856_100077319 3300005614 Bacteria 3298
20 Ga0068864_100120062 3300005618 Bacteria 2350
21 Ga0068851_10211288 3300005834 Bacteria 1087
22 Ga0068870_10354334 3300005840 Bacteria 942
23 Ga0075363_100599444 3300006048 Bacteria 660
24 Ga0075362_10018292 3300006177 Bacteria 2896
25 Ga0075367_10283845 3300006178 Bacteria 1041
26 Ga0075366_10034505 3300006195 Bacteria 2980
27 Ga0075366_10686253 3300006195 Bacteria 636
28 Ga0068871_102188645 3300006358 Bacteria 527
29 Ga0111539_10665414 3300009094 Bacteria 1212
30 Ga0105245_10274749 3300009098 Bacteria 1645
31 Ga0105241_10017440 3300009174 Bacteria 5279
32 Ga0105242_10928431 3300009176 Bacteria 873
33 Ga0105248_10191116 3300009177 Bacteria 2307
34 Ga0105248_11302688 3300009177 Bacteria 822
35 Ga0105249_11379840 3300009553 Bacteria 777
36 Ga0157378_10266496 3300013297 Bacteria 1645
37 Ga0157372_12155243 3300013307 Bacteria 640
38 Ga0157380_10448568 3300014326 Bacteria 1238
39 Ga0182008_10339850 3300014497 Bacteria 794
40 Ga0157376_10058591 3300014969 Bacteria 3226
41 Ga0207426_1084399 3300025302 Bacteria 855
42 Ga0207682_10118922 3300025893 Bacteria 1170
43 Ga0207654_10341068 3300025911 Bacteria 1029
44 Ga0207650_10393429 3300025925 Bacteria 1146
45 Ga0207650_10433908 3300025925 Bacteria 1091
46 Ga0207644_10607966 3300025931 Bacteria 908
47 Ga0207706_10274627 3300025933 Bacteria 1470
48 Ga0207669_10620401 3300025937 Bacteria 881
49 Ga0207704_10376154 3300025938 Bacteria 1114
50 Ga0207691_10077567 3300025940 Bacteria 2993
51 Ga0207711_10437460 3300025941 Bacteria 1217
52 Ga0207667_10070318 3300025949 Bacteria 3643
53 Ga0207667_10538762 3300025949 Bacteria 1181
54 Ga0207667_11861413 3300025949 Bacteria 565
55 Ga0207651_10242063 3300025960 Bacteria 1471
56 Ga0207712_10910963 3300025961 Bacteria 777
57 Ga0207668_10069643 3300025972 Bacteria 2506
58 Ga0207640_10370868 3300025981 Bacteria 1157
59 Ga0207677_10013003 3300026023 Bacteria 4810
60 Ga0207677_10469402 3300026023 Bacteria 1082
61 Ga0207702_10062792 3300026078 Bacteria 3174
62 Ga0207676_10170364 3300026095 Bacteria 1896
63 Ga0207674_10501223 3300026116 Bacteria 1173
64 Ga0207698_12179469 3300026142 Bacteria 567
65 Ga0209996_1000895 3300027395 Bacteria 3514
66 Ga0209995_1000752 3300027471 Bacteria 4982
67 Ga0209968_1000302 3300027526 Bacteria 8326
68 Ga0209983_1021539 3300027665 Bacteria 1348
69 Ga0209971_1005026 3300027682 Bacteria 3142
70 Ga0209966_1000027 3300027695 Bacteria 65242
71 Ga0209974_10104249 3300027876 Bacteria 993
72 Ga0307515_10000084 3300028794 Bacteria 221434
73 Ga0307512_10094594 3300030522 Bacteria 2061
74 Ga0265331_10085821 3300031250 Bacteria 1458
75 Ga0307513_10065757 3300031456 Bacteria 3814
76 Ga0307514_10000319 3300031649 Bacteria 115327
77 Ga0265314_10011428 3300031711 Bacteria 7330
78 Ga0307405_10082560 3300031731 Bacteria 2104
79 Ga0307405_10555697 3300031731 Bacteria 930
80 Ga0307405_11425664 3300031731 Bacteria 606
81 Ga0307406_10285630 3300031901 Bacteria 1261
82 Ga0307412_11452910 3300031911 Bacteria 622
83 Ga0307415_100558304 3300032126 Bacteria 1012
84 Ga0373939_0174221 3300035114 Bacteria 798
85 Ga0373942_0151075 3300035207 Bacteria 746
86 Ga0373931_0005670 3300035691 Bacteria 5796
87 Ga0373937_1011632 3300036401 Bacteria 780
88 Ga0395899_0010742 3300037312 Bacteria 7020
89 Ga0395899_0029399 3300037312 Bacteria 4133
90 Ga0395899_0315059 3300037312 Bacteria 1055
91 Ga0395900_0000046 3300037418 Bacteria 230114
92 Ga0395900_0008727 3300037418 Bacteria 10408
93 Ga0395900_0014274 3300037418 Bacteria 8109
94 Ga0395900_0113482 3300037418 Bacteria 2781
95 Ga0395900_0430762 3300037418 Bacteria 1278
96 Ga0395900_0483888 3300037418 Bacteria 1190
97 Ga0395900_0765087 3300037418 Bacteria 895
98 Ga0395900_0880208 3300037418 Bacteria 820
99 Ga0395900_0925145 3300037418 Bacteria 794
100 Ga0395900_1272473 3300037418 Bacteria 650
101 Ga0395898_0013874 3300037466 Bacteria 8282
102 Ga0395898_0039007 3300037466 Bacteria 4704
103 Ga0395898_0087156 3300037466 Bacteria 3008
104 Ga0395898_0667050 3300037466 Bacteria 982
105 Ga0395905_0000138 3300037471 Bacteria 120373
106 Ga0395905_0010624 3300037471 Bacteria 8936
107 Ga0395905_0016385 3300037471 Bacteria 7042
108 Ga0395905_0025775 3300037471 Bacteria 5544
109 Ga0395905_0034733 3300037471 Bacteria 4735
110 Ga0395905_0038670 3300037471 Bacteria 4475
111 Ga0395905_0048293 3300037471 Bacteria 3989
112 Ga0395905_0048768 3300037471 Bacteria 3967
113 Ga0395905_0156497 3300037471 Bacteria 2143
114 Ga0395905_0177539 3300037471 Bacteria 1999
115 Ga0395905_0245549 3300037471 Bacteria 1672
116 Ga0395905_0320218 3300037471 Bacteria 1440
117 Ga0395905_0411955 3300037471 Bacteria 1247
118 Ga0395905_0686684 3300037471 Bacteria 926
119 Ga0395905_0809425 3300037471 Bacteria 840
120 Ga0395905_0958522 3300037471 Bacteria 758
121 Ga0395901_0037191 3300038443 Bacteria 5034
122 Ga0395901_0049559 3300038443 Bacteria 4364
123 Ga0395901_0182846 3300038443 Bacteria 2199
124 Ga0395901_0185930 3300038443 Bacteria 2179
125 Ga0395901_0238485 3300038443 Bacteria 1897
126 Ga0395901_0376272 3300038443 Bacteria 1462
127 Ga0436365_1000819 3300039437 Bacteria 519
128 Ga0439465_0312411 3300041413 Bacteria 589
129 Ga0451807_2748707 3300041486 Bacteria 645
130 Ga0451837_1577159 3300041494 Bacteria 739
131 Ga0451843_1052474 3300041509 Bacteria 543
132 Ga0439456_107780 3300042013 Bacteria 633
133 Ga0450912_011530 3300042116 Bacteria 770
134 Ga0450914_002836 3300042118 Bacteria 1278
135 Ga0450921_030313 3300042123 Bacteria 549
136 Ga0439446_0192979 3300042156 Bacteria 685
137 Ga0451577_0042072 3300042876 Bacteria 4098
138 Ga0451577_0406070 3300042876 Bacteria 1236
139 Ga0451577_0548219 3300042876 Bacteria 1050
140 Ga0466969_0097326 3300044656 Bacteria 1388
141 Ga0466969_0279049 3300044656 Bacteria 756
142 Ga0466969_0421802 3300044656 Bacteria 606
143 Ga0466972_0000323 3300044658 Bacteria 27151
144 Ga0466972_0039523 3300044658 Bacteria 2302
145 Ga0466972_0227173 3300044658 Bacteria 873
146 Ga0453683_0419944 3300044673 Bacteria 863
147 Ga0466965_0085896 3300044683 Bacteria 1595
148 Ga0466965_0119595 3300044683 Bacteria 1359
149 Ga0466965_0339288 3300044683 Bacteria 821
150 Ga0466965_0552594 3300044683 Bacteria 650
151 Ga0466966_0063134 3300044684 Bacteria 2334
152 Ga0466966_0333824 3300044684 Bacteria 911
153 Ga0466966_0459318 3300044684 Bacteria 766
154 Ga0466961_0043843 3300044693 Bacteria 2864
155 Ga0466961_0108138 3300044693 Bacteria 1750
156 Ga0466964_0050430 3300044706 Bacteria 1706
157 Ga0466964_0144750 3300044706 Bacteria 1096
158 Ga0466964_0394556 3300044706 Bacteria 721
159 Ga0453684_0275838 3300044712 Bacteria 1919
160 Ga0453684_1038577 3300044712 Bacteria 869
161 Ga0466971_0458197 3300044719 Bacteria 626
162 Ga0466968_0202910 3300044735 Bacteria 929
163 Ga0466970_0054415 3300044765 Bacteria 2137
164 Ga0466960_0584539 3300044901 Unclassified 661
165 Ga0466959_0022882 3300045049 Bacteria 4619
166 Ga0466959_0267232 3300045049 Bacteria 1176
167 Ga0451576_0062479 3300045051 Bacteria 3882
168 Ga0451576_0076514 3300045051 Bacteria 3482
169 Ga0466967_0436076 3300045976 Bacteria 1279
170 Ga0466967_0625927 3300045976 Bacteria 1063
171 Ga0495592_0423740 3300046454 Bacteria 839
172 Ga0495652_0551023 3300046529 Bacteria 793
173 Ga0495654_0008438 3300046530 Bacteria 5691
174 Ga0495621_0030925 3300046539 Bacteria 1833
175 Ga0495621_0154213 3300046539 Bacteria 905
176 Ga0495633_0086491 3300046558 Bacteria 1458
177 Ga0495656_0100257 3300046615 Bacteria 1338
178 Ga0495656_0111954 3300046615 Bacteria 1278
179 Ga0495600_0879233 3300046809 Bacteria 530
180 Ga0496106_0062396 3300048909 Bacteria 2829
181 Ga0496113_0412128 3300048916 Bacteria 1085
182 Ga0496123_0506135 3300048926 Bacteria 527
183 Ga0501034_0073920 3300049571 Bacteria 3417
184 Ga0501034_0096278 3300049571 Bacteria 2956
185 Ga0501036_0099076 3300049572 Bacteria 2465
186 Ga0501046_0077545 3300049580 Bacteria 2572
187 Ga0501047_0090637 3300049581 Bacteria 2934
188 Ga0501073_1095512 3300049589 Bacteria 547
189 Ga0501076_1660511 3300049592 Bacteria 524
190 Ga0501080_0142296 3300049742 Bacteria 2217
191 Ga0501266_016055 3300049763 Bacteria 992
192 Ga0501035_0162360 3300049822 Bacteria 1933
193 Ga0501044_0301664 3300049823 Bacteria 1530
194 nmdc:mga03683_39574_c1 3300050489 Bacteria 1930
195 nmdc:mga03n38_161682_c1 3300050490 Bacteria 1134
196 nmdc:mga0k408_747208_c1 3300050493 Bacteria 571
197 nmdc:mga06z11_986369_c1 3300050494 Bacteria 513
198 nmdc:mga07m45_886083_c1 3300050496 Bacteria 511
199 Ga0500646_0125948 3300053090 Bacteria 828
200 Ga0500593_011869 3300053117 Bacteria 3682
201 Ga0500634_0087951 3300053161 Bacteria 1585
202 Ga0590075_036812 3300059424 Bacteria 1247
203 Ga0466962_0053418 3300061719 Bacteria 1931
204 2644059787 2643221609 Bacteria 6756331
205 2644074930 2643221611 Bacteria 6820941
206 2644339993 2643221660 Bacteria 4208257
207 2842748543 2842747753 Bacteria 5578255
208 2881104231 2881101125 Bacteria 4590519
209 Ga0395905_0096170
210 JGI26128J50194_1001822
211 JGI26128J50194_1001979
212 Ga0070658_10242202
213 Ga0070690_100435220
214 Ga0070670_100603889
215 Ga0070677_10103034
216 Ga0068868_100416431
217 Ga0068868_100462170
218 Ga0070668_100154070
219 Ga0070669_100061546
220 Ga0070671_100792004
221 Ga0070659_101485356
222 Ga0070678_100032461
223 Ga0070662_100281524
224 Ga0070672_100091348
225 Ga0068855_100306507
226 Ga0068854_100519322
227 Ga0068856_100077319
228 Ga0068864_100120062
229 Ga0068851_10211288
230 Ga0068870_10354334
231 Ga0075363_100599444
232 Ga0075362_10018292
233 Ga0075367_10283845
234 Ga0075366_10034505
235 Ga0075366_10686253
236 Ga0068871_102188645
237 Ga0111539_10665414
238 Ga0105245_10274749
239 Ga0105241_10017440
240 Ga0105242_10928431
241 Ga0105248_10191116
242 Ga0105248_11302688
243 Ga0105249_11379840
244 Ga0157378_10266496
245 Ga0157372_12155243
246 Ga0157380_10448568
247 Ga0182008_10339850
248 Ga0157376_10058591
249 Ga0207426_1084399
250 Ga0207682_10118922
251 Ga0207654_10341068
252 Ga0207650_10393429
253 Ga0207650_10433908
254 Ga0207644_10607966
255 Ga0207706_10274627
256 Ga0207669_10620401
257 Ga0207704_10376154
258 Ga0207691_10077567
259 Ga0207711_10437460
260 Ga0207667_10070318
261 Ga0207667_10538762
262 Ga0207667_11861413
263 Ga0207651_10242063
264 Ga0207712_10910963
265 Ga0207668_10069643
266 Ga0207640_10370868
267 Ga0207677_10013003
268 Ga0207677_10469402
269 Ga0207702_10062792
270 Ga0207676_10170364
271 Ga0207674_10501223
272 Ga0207698_12179469
273 Ga0209996_1000895
274 Ga0209995_1000752
275 Ga0209968_1000302
276 Ga0209983_1021539
277 Ga0209971_1005026
278 Ga0209966_1000027
279 Ga0209974_10104249
280 Ga0307515_10000084
281 Ga0307512_10094594
282 Ga0265331_10085821
283 Ga0307513_10065757
284 Ga0307514_10000319
285 Ga0265314_10011428
286 Ga0307405_10082560
287 Ga0307405_10555697
288 Ga0307405_11425664
289 Ga0307406_10285630
290 Ga0307412_11452910
291 Ga0307415_100558304
292 Ga0373939_0174221
293 Ga0373942_0151075
294 Ga0373931_0005670
295 Ga0373937_1011632
296 Ga0395899_0010742
297 Ga0395899_0029399
298 Ga0395899_0315059
299 Ga0395900_0000046
300 Ga0395900_0008727
301 Ga0395900_0014274
302 Ga0395900_0113482
303 Ga0395900_0430762
304 Ga0395900_0483888
305 Ga0395900_0765087
306 Ga0395900_0880208
307 Ga0395900_0925145
308 Ga0395900_1272473
309 Ga0395898_0013874
310 Ga0395898_0039007
311 Ga0395898_0087156
312 Ga0395898_0667050
313 Ga0395905_0000138
314 Ga0395905_0010624
315 Ga0395905_0016385
316 Ga0395905_0025775
317 Ga0395905_0034733
318 Ga0395905_0038670
319 Ga0395905_0048293
320 Ga0395905_0048768
321 Ga0395905_0156497
322 Ga0395905_0177539
323 Ga0395905_0245549
324 Ga0395905_0320218
325 Ga0395905_0411955
326 Ga0395905_0686684
327 Ga0395905_0809425
328 Ga0395905_0958522
329 Ga0395901_0037191
330 Ga0395901_0049559
331 Ga0395901_0182846
332 Ga0395901_0185930
333 Ga0395901_0238485
334 Ga0395901_0376272
335 Ga0436365_1000819
336 Ga0439465_0312411
337 Ga0451807_2748707
338 Ga0451837_1577159
339 Ga0451843_1052474
340 Ga0439456_107780
341 Ga0450912_011530
342 Ga0450914_002836
343 Ga0450921_030313
344 Ga0439446_0192979
345 Ga0451577_0042072
346 Ga0451577_0406070
347 Ga0451577_0548219
348 Ga0466969_0097326
349 Ga0466969_0279049
350 Ga0466969_0421802
351 Ga0466972_0000323
352 Ga0466972_0039523
353 Ga0466972_0227173
354 Ga0453683_0419944
355 Ga0466965_0085896
356 Ga0466965_0119595
357 Ga0466965_0339288
358 Ga0466965_0552594
359 Ga0466966_0063134
360 Ga0466966_0333824
361 Ga0466966_0459318
362 Ga0466961_0043843
363 Ga0466961_0108138
364 Ga0466964_0050430
365 Ga0466964_0144750
366 Ga0466964_0394556
367 Ga0453684_0275838
368 Ga0453684_1038577
369 Ga0466971_0458197
370 Ga0466968_0202910
371 Ga0466970_0054415
372 Ga0466960_0584539
373 Ga0466959_0022882
374 Ga0466959_0267232
375 Ga0451576_0062479
376 Ga0451576_0076514
377 Ga0466967_0436076
378 Ga0466967_0625927
379 Ga0495592_0423740
380 Ga0495652_0551023
381 Ga0495654_0008438
382 Ga0495621_0030925
383 Ga0495621_0154213
384 Ga0495633_0086491
385 Ga0495656_0100257
386 Ga0495656_0111954
387 Ga0495600_0879233
388 Ga0496106_0062396
389 Ga0496113_0412128
390 Ga0496123_0506135
391 Ga0501034_0073920
392 Ga0501034_0096278
393 Ga0501036_0099076
394 Ga0501046_0077545
395 Ga0501047_0090637
396 Ga0501073_1095512
397 Ga0501076_1660511
398 Ga0501080_0142296
399 Ga0501266_016055
400 Ga0501035_0162360
401 Ga0501044_0301664
402 nmdc:mga03683_39574_c1
403 nmdc:mga03n38_161682_c1
404 nmdc:mga0k408_747208_c1
405 nmdc:mga06z11_986369_c1
406 nmdc:mga07m45_886083_c1
407 Ga0500646_0125948
408 Ga0500593_011869
409 Ga0500634_0087951
410 Ga0590075_036812
411 Ga0466962_0053418
412 2644059787
413 2644074930
414 2644339993
415 2842748543
416 2881104231

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04430

DUF498

Protein of unknown function (DUF498/DUF598)

32

139

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cpk-assembly1.cif.gz_A crystal structure of the q7w7n7_borpa protein from bordetella parapertussis. northeast structural genomics consortium target ber31 0.9389 10 123
3cpk-assembly1.cif.gz_A crystal structure of the q7w7n7_borpa protein from bordetella parapertussis. northeast structural genomics consortium target ber31 0.9013 10 123
2gm2-assembly1.cif.gz_A nmr structure of xanthomonas campestris xcc1710: northeast structural genomics consortium target xcr35 0.839 1 126
2gm2-assembly1.cif.gz_A nmr structure of xanthomonas campestris xcc1710: northeast structural genomics consortium target xcr35 0.8332 1 126
2k2e-assembly1.cif.gz_A solution nmr structure of bordetella pertussis protein bp2786, a mth938-like domain. northeast structural genomics consortium target ber31 0.8307 1 122
ID Description Score Start End Superfamily
af_A0A0P0VZT1_1_69_3.40.50.10190 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;BRCT domain 0.9326 65 125 3.40.50.10190
3cpkA00 Alpha Beta;3-Layer(aba) Sandwich;Hypothetical Protein Mth938; Chain: A,;MTH938-like 0.9288 10 123 3.40.1230.10
3cpkA00 Alpha Beta;3-Layer(aba) Sandwich;Hypothetical Protein Mth938; Chain: A,;MTH938-like 0.8984 10 123 3.40.1230.10
2k2eA01 Alpha Beta;3-Layer(aba) Sandwich;Hypothetical Protein Mth938; Chain: A,;MTH938-like 0.8854 12 123 3.40.1230.10
af_A0A1D6K8Z7_72_206_3.40.1230.10 Alpha Beta;3-Layer(aba) Sandwich;Hypothetical Protein Mth938; Chain: A,;MTH938-like 0.8807 11 123 3.40.1230.10
ID Description Score Start End GO Terms
AF-A0A7W1AQJ9-F1-model_v4 Xcc1710-like domain-containing protein 0.9765 51 123
AF-A0A176RU56-F1-model_v4 Protein containing DUF498 0.967 51 123
AF-A0A1F8VM45-F1-model_v4 Xcc1710-like domain-containing protein 0.9657 9 121
AF-A0A0J7JSZ4-F1-model_v4 deleted 0.962 11 123
AF-A0A1W9WC37-F1-model_v4 Xcc1710-like domain-containing protein 0.9614 9 121

Map