F317470

General Info

Members Datasets Scaffolds Average Seq Length
208 134 416 515

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100006024|Ga0070708_1000060242
Length 555
Sequence LNTPDLDAAAGAVETARALCAQAARHLAEQSSDGGRISVDRLDEHQIFAYDLAHAQSGIEGARVMVDYGRHGGLQARLACLFAAEAIADLVGRLVGREAEWGVSAMDLAPAGEFVNAHRSPAFLDDVAEEVARHGGGPPELSEDFELVRDTFRRFAADKIRPVAEEVHRKNTDIPEEVITGLAELGGFGLSVPEQYGGMASGGESDYLGMVIATEELAWGSLGVGGSLITRPEILTRALVRGGTEEQKQRWLPRIATGEAMVAVMVTEPDYGSDVANVKVMGTETEPGVRGVPGDGSGWKINGVKTWATFAGRANTLMLLVRTDPDRSKGHKGLSLFVVEKPEAPGHHFEFTQDSGGRMEGRAIDTLGYRGMHSYEVAFEDWLVPEANLVGGKDGLGKGFYFQMEGFENGRLQTAARAVGLMQAAFDAALDYARERKVFGRPIFEYQLTKAKLARMAAVIQGGRQFAYAVARLMAKGEGALEASMVKAYVCRAAEWVTREALQIHGGMGYAEEFPVSRYFVDARVLSIFEGADETLCLRVIARRLAEQALEGAAP

Samples

Sample ID Description Type Environment
1 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
7 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
8 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
13 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
20 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
37 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
38 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
39 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
40 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
41 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
42 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
43 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
44 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
45 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
46 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
47 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
48 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
49 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
50 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
53 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
54 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
55 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
56 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
57 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
58 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
59 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
63 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
64 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
65 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
66 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
67 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
68 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
69 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
70 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
71 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
72 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
73 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
78 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
104 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
108 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
109 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
110 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
111 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
120 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
121 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
126 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
127 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
128 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
129 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
130 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
133 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
134 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.52
Metatranscriptomes 0
Isolates 0.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.85
Nodule 0
Rhizoplane 5.29
Rhizosphere 89.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070708_100006024 3300005445 Bacteria 9636
2 Ga0070676_10028701 3300005328 Bacteria 3161
3 Ga0070675_100076399 3300005354 Bacteria 2786
4 Ga0070671_100011818 3300005355 Bacteria 7024
5 Ga0070674_100091510 3300005356 Bacteria 2197
6 Ga0070706_100095702 3300005467 Bacteria 2756
7 Ga0070697_100146393 3300005536 Bacteria 1989
8 Ga0070693_100001127 3300005547 Bacteria 11976
9 Ga0068855_100064306 3300005563 Bacteria 4278
10 Ga0068858_100063606 3300005842 Bacteria 3414
11 Ga0081455_10001606 3300005937 Bacteria 27604
12 Ga0081455_10004669 3300005937 Bacteria 15248
13 Ga0081455_10077320 3300005937 Bacteria 2738
14 Ga0081538_10000383 3300005981 Bacteria 50305
15 Ga0081539_10014311 3300005985 Bacteria 5879
16 Ga0075365_10044223 3300006038 Bacteria 2917
17 Ga0075363_100020813 3300006048 Bacteria 3295
18 Ga0075428_100000006 3300006844 Bacteria 288592
19 Ga0075428_100000720 3300006844 Bacteria 34285
20 Ga0075428_100007012 3300006844 Bacteria 12494
21 Ga0075430_100000236 3300006846 Bacteria 38221
22 Ga0075430_100032626 3300006846 Bacteria 4420
23 Ga0075431_100000987 3300006847 Bacteria 25336
24 Ga0075431_100014202 3300006847 Bacteria 8053
25 Ga0075431_100027956 3300006847 Bacteria 5789
26 Ga0075431_100061357 3300006847 Bacteria 3879
27 Ga0075433_10002060 3300006852 Bacteria 15196
28 Ga0075434_100001568 3300006871 Bacteria 19364
29 Ga0075429_100002332 3300006880 Bacteria 15952
30 Ga0075429_100011074 3300006880 Bacteria 7805
31 Ga0075429_100015184 3300006880 Bacteria 6675
32 Ga0075429_100189427 3300006880 Bacteria 1803
33 Ga0075436_100005022 3300006914 Bacteria 9093
34 Ga0075435_100003350 3300007076 Bacteria 10857
35 Ga0111539_10001574 3300009094 Bacteria 30375
36 Ga0111539_10023146 3300009094 Bacteria 7629
37 Ga0111539_10141309 3300009094 Bacteria 2818
38 Ga0111539_10145954 3300009094 Bacteria 2770
39 Ga0105245_10002064 3300009098 Bacteria 18224
40 Ga0114129_10000955 3300009147 Bacteria 37741
41 Ga0114129_10028624 3300009147 Bacteria 7894
42 Ga0114129_10029775 3300009147 Bacteria 7730
43 Ga0114129_10050657 3300009147 Bacteria 5832
44 Ga0114129_10081340 3300009147 Bacteria 4502
45 Ga0114129_10177603 3300009147 Bacteria 2899
46 Ga0114129_10348276 3300009147 Bacteria 1963
47 Ga0157380_10000009 3300014326 Bacteria 142155
48 Ga0157380_10000805 3300014326 Bacteria 19630
49 Ga0207684_10026565 3300025910 Bacteria 4936
50 Ga0207707_10142918 3300025912 Bacteria 2092
51 Ga0207659_10043951 3300025926 Bacteria 3142
52 Ga0207687_10003117 3300025927 Bacteria 11239
53 Ga0207644_10006286 3300025931 Bacteria 7738
54 Ga0207428_10020230 3300027907 Bacteria 5658
55 Ga0265334_10020388 3300028573 Bacteria 2715
56 Ga0265338_10000134 3300028800 Bacteria 135896
57 Ga0316182_1257957 3300030745 Bacteria 5948
58 Ga0265325_10000801 3300031241 Bacteria 22728
59 Ga0265339_10000830 3300031249 Bacteria 23799
60 Ga0265327_10000860 3300031251 Bacteria 45217
61 Ga0265327_10010868 3300031251 Bacteria 6341
62 Ga0265316_10024713 3300031344 Bacteria 5025
63 Ga0265313_10001647 3300031595 Bacteria 20696
64 Ga0316576_10051448 3300031727 Bacteria 2998
65 Ga0316578_10021489 3300031728 Bacteria 3582
66 Ga0316577_10012866 3300031733 Bacteria 4566
67 Ga0307414_10059596 3300032004 Bacteria 2696
68 Ga0373930_0000784 3300034816 Bacteria 4519
69 Ga0373929_0004457 3300035085 Bacteria 2510
70 Ga0373949_0010102 3300035090 Bacteria 2066
71 Ga0373932_0001418 3300035112 Bacteria 6719
72 Ga0373945_0022041 3300035116 Bacteria 2192
73 Ga0316574_0041664 3300035398 Bacteria 2831
74 Ga0373931_0000101 3300035691 Bacteria 39997
75 Ga0373931_0000846 3300035691 Bacteria 12888
76 Ga0316584_0022165 3300036712 Bacteria 4630
77 Ga0316584_0025849 3300036712 Bacteria 4309
78 Ga0400483_188153 3300039062 Bacteria 4129
79 Ga0436362_0561721 3300039453 Bacteria 2699
80 Ga0451793_0672998 3300041452 Bacteria 2235
81 Ga0439445_0003865 3300042004 Bacteria 3374
82 Ga0439463_005870 3300042016 Bacteria 3048
83 Ga0439434_0017867 3300042435 Bacteria 2123
84 Ga0451577_0008487 3300042876 Bacteria 10000
85 Ga0453684_0002246 3300044712 Bacteria 47929
86 Ga0466958_0035988 3300045836 Bacteria 2961
87 Ga0495653_0027090 3300046463 Bacteria 4590
88 Ga0495653_0037425 3300046463 Bacteria 3813
89 Ga0495628_0024647 3300046516 Bacteria 4921
90 Ga0495630_0017234 3300046517 Bacteria 5290
91 Ga0495630_0117744 3300046517 Bacteria 2014
92 Ga0495640_0166631 3300046533 Bacteria 1409
93 Ga0495621_0029189 3300046539 Bacteria 1879
94 Ga0495656_0000490 3300046615 Bacteria 12898
95 Ga0495634_0009518 3300046642 Bacteria 7163
96 Ga0495634_0037775 3300046642 Bacteria 3297
97 Ga0495635_0118004 3300046663 Bacteria 1811
98 Ga0495657_0010174 3300046675 Bacteria 7085
99 Ga0495657_0101402 3300046675 Bacteria 1834
100 Ga0495623_0013474 3300046679 Bacteria 5301
101 Ga0495613_0001114 3300046689 Bacteria 20445
102 Ga0495674_0021609 3300047319 Bacteria 5949
103 Ga0495672_0000955 3300047320 Bacteria 30080
104 Ga0495680_0006119 3300047322 Bacteria 11237
105 Ga0495675_0031990 3300047444 Bacteria 3359
106 Ga0495593_0035211 3300047673 Bacteria 2720
107 Ga0496101_0004714 3300048904 Bacteria 8637
108 Ga0496102_0107087 3300048905 Bacteria 2603
109 Ga0496104_0023611 3300048907 Bacteria 5655
110 Ga0496105_0008169 3300048908 Bacteria 8135
111 Ga0496108_0059059 3300048911 Bacteria 3225
112 Ga0496110_0029812 3300048913 Bacteria 4700
113 Ga0496111_0037149 3300048914 Bacteria 3486
114 Ga0496112_0009266 3300048915 Bacteria 8852
115 Ga0496114_0062610 3300048917 Bacteria 3114
116 Ga0496115_0052957 3300048918 Bacteria 3256
117 Ga0501031_0032560 3300049568 Bacteria 3399
118 Ga0501033_0006339 3300049570 Bacteria 9272
119 Ga0501033_0009938 3300049570 Bacteria 7305
120 Ga0501033_0014764 3300049570 Bacteria 5930
121 Ga0501036_0010076 3300049572 Bacteria 7788
122 Ga0501036_0056215 3300049572 Bacteria 3334
123 Ga0501036_0122888 3300049572 Bacteria 2192
124 Ga0501038_0034247 3300049574 Bacteria 4467
125 Ga0501038_0045418 3300049574 Bacteria 3814
126 Ga0501039_0005016 3300049575 Bacteria 10048
127 Ga0501039_0067436 3300049575 Bacteria 2779
128 Ga0501039_0114424 3300049575 Bacteria 2111
129 Ga0501040_0010722 3300049576 Bacteria 5993
130 Ga0501040_0049581 3300049576 Bacteria 2871
131 Ga0501041_0003397 3300049577 Bacteria 9164
132 Ga0501041_0004555 3300049577 Bacteria 8043
133 Ga0501041_0042557 3300049577 Bacteria 2761
134 Ga0501042_0045443 3300049578 Bacteria 3130
135 Ga0501043_0071726 3300049579 Bacteria 2720
136 Ga0501046_0141557 3300049580 Bacteria 1820
137 Ga0501047_0012673 3300049581 Bacteria 7986
138 Ga0501048_0060657 3300049582 Bacteria 2680
139 Ga0501048_0204446 3300049582 Bacteria 1400
140 Ga0501068_0004896 3300049584 Bacteria 7295
141 Ga0501068_0023877 3300049584 Bacteria 3586
142 Ga0501068_0046926 3300049584 Bacteria 2605
143 Ga0501069_0000887 3300049585 Bacteria 14268
144 Ga0501069_0060891 3300049585 Bacteria 2108
145 Ga0501070_0001336 3300049586 Bacteria 22017
146 Ga0501071_0034227 3300049587 Bacteria 3614
147 Ga0501071_0146332 3300049587 Bacteria 1761
148 Ga0501072_0011262 3300049588 Bacteria 6829
149 Ga0501072_0085080 3300049588 Bacteria 2508
150 Ga0501073_0032386 3300049589 Bacteria 3726
151 Ga0501074_0124885 3300049590 Bacteria 1840
152 Ga0501075_0001414 3300049591 Bacteria 15642
153 Ga0501075_0004514 3300049591 Bacteria 9425
154 Ga0501075_0013053 3300049591 Bacteria 5921
155 Ga0501076_0005461 3300049592 Bacteria 9149
156 Ga0501076_0158675 3300049592 Bacteria 1842
157 Ga0501077_0035801 3300049593 Bacteria 3160
158 Ga0501077_0094536 3300049593 Bacteria 1895
159 Ga0501079_0006171 3300049741 Bacteria 8988
160 Ga0501079_0017059 3300049741 Bacteria 5545
161 Ga0501079_0023995 3300049741 Bacteria 4679
162 Ga0501080_0003551 3300049742 Bacteria 13736
163 Ga0501081_0047719 3300049743 Bacteria 2946
164 Ga0501083_0000827 3300049744 Bacteria 20290
165 Ga0501044_0003095 3300049823 Bacteria 18834
166 Ga0501045_0005503 3300049824 Bacteria 8761
167 Ga0501045_0014490 3300049824 Bacteria 5588
168 Ga0501045_0024891 3300049824 Bacteria 4300
169 nmdc:mga03n38_1223_c1 3300050490 Bacteria 4547
170 nmdc:mga0yw44_140_c1 3300050492 Bacteria 24799
171 nmdc:mga05p37_134310_c1 3300050507 Bacteria 3035
172 nmdc:mga05p37_29723_c1 3300050507 Bacteria 6668
173 nmdc:mga05p37_44154_c1 3300050507 Bacteria 5483
174 nmdc:mga09592_2957_c1 3300050508 Bacteria 13773
175 nmdc:mga09592_47867_c1 3300050508 Bacteria 3604
176 nmdc:mga09592_92994_c1 3300050508 Bacteria 2578
177 nmdc:mga0qj67_358_c1 3300050509 Bacteria 31543
178 nmdc:mga06r32_107680_c1 3300050510 Bacteria 2739
179 nmdc:mga06r32_21489_c1 3300050510 Bacteria 5958
180 nmdc:mga06r32_32481_c1 3300050510 Bacteria 4912
181 nmdc:mga06r32_46_c1 3300050510 Bacteria 75219
182 nmdc:mga06r32_50565_c1 3300050510 Bacteria 3976
183 nmdc:mga08y16_157814_c1 3300050511 Bacteria 2358
184 nmdc:mga0n895_3299_c1 3300050512 Bacteria 12949
185 nmdc:mga0a205_2894_c1 3300050515 Bacteria 15189
186 Ga0495601_0042733 3300053077 Bacteria 2845
187 Ga0495619_0001955 3300053085 Bacteria 13745
188 Ga0495619_0053156 3300053085 Bacteria 2678
189 Ga0495619_0068670 3300053085 Bacteria 2368
190 Ga0495619_0084923 3300053085 Bacteria 2137
191 Ga0500566_0000051 3300053094 Bacteria 57633
192 Ga0500568_0000032 3300053139 Bacteria 147655
193 Ga0500568_0008299 3300053139 Bacteria 5018
194 Ga0500616_0000957 3300053153 Bacteria 31283
195 Ga0501084_0000055 3300054114 Bacteria 89873
196 Ga0501084_0000579 3300054114 Bacteria 27999
197 Ga0501084_0001104 3300054114 Bacteria 21003
198 Ga0501082_0005872 3300060353 Bacteria 10657
199 Ga0501082_0083724 3300060353 Bacteria 2752
200 Ga0501082_0084140 3300060353 Bacteria 2744
201 Ga0501082_0118012 3300060353 Bacteria 2298
202 Ga0501082_0157829 3300060353 Bacteria 1971
203 Ga0530510_0009084 3300061734 Bacteria 6965
204 Ga0530510_0034144 3300061734 Bacteria 3663
205 Ga0530510_0066297 3300061734 Bacteria 2617
206 Ga0530510_0071036 3300061734 Bacteria 2527
207 Ga0530510_0077354 3300061734 Bacteria 2418
208 2816503389 2816332139 Bacteria 9138787
209 Ga0070708_100006024
210 Ga0070676_10028701
211 Ga0070675_100076399
212 Ga0070671_100011818
213 Ga0070674_100091510
214 Ga0070706_100095702
215 Ga0070697_100146393
216 Ga0070693_100001127
217 Ga0068855_100064306
218 Ga0068858_100063606
219 Ga0081455_10001606
220 Ga0081455_10004669
221 Ga0081455_10077320
222 Ga0081538_10000383
223 Ga0081539_10014311
224 Ga0075365_10044223
225 Ga0075363_100020813
226 Ga0075428_100000006
227 Ga0075428_100000720
228 Ga0075428_100007012
229 Ga0075430_100000236
230 Ga0075430_100032626
231 Ga0075431_100000987
232 Ga0075431_100014202
233 Ga0075431_100027956
234 Ga0075431_100061357
235 Ga0075433_10002060
236 Ga0075434_100001568
237 Ga0075429_100002332
238 Ga0075429_100011074
239 Ga0075429_100015184
240 Ga0075429_100189427
241 Ga0075436_100005022
242 Ga0075435_100003350
243 Ga0111539_10001574
244 Ga0111539_10023146
245 Ga0111539_10141309
246 Ga0111539_10145954
247 Ga0105245_10002064
248 Ga0114129_10000955
249 Ga0114129_10028624
250 Ga0114129_10029775
251 Ga0114129_10050657
252 Ga0114129_10081340
253 Ga0114129_10177603
254 Ga0114129_10348276
255 Ga0157380_10000009
256 Ga0157380_10000805
257 Ga0207684_10026565
258 Ga0207707_10142918
259 Ga0207659_10043951
260 Ga0207687_10003117
261 Ga0207644_10006286
262 Ga0207428_10020230
263 Ga0265334_10020388
264 Ga0265338_10000134
265 Ga0316182_1257957
266 Ga0265325_10000801
267 Ga0265339_10000830
268 Ga0265327_10000860
269 Ga0265327_10010868
270 Ga0265316_10024713
271 Ga0265313_10001647
272 Ga0316576_10051448
273 Ga0316578_10021489
274 Ga0316577_10012866
275 Ga0307414_10059596
276 Ga0373930_0000784
277 Ga0373929_0004457
278 Ga0373949_0010102
279 Ga0373932_0001418
280 Ga0373945_0022041
281 Ga0316574_0041664
282 Ga0373931_0000101
283 Ga0373931_0000846
284 Ga0316584_0022165
285 Ga0316584_0025849
286 Ga0400483_188153
287 Ga0436362_0561721
288 Ga0451793_0672998
289 Ga0439445_0003865
290 Ga0439463_005870
291 Ga0439434_0017867
292 Ga0451577_0008487
293 Ga0453684_0002246
294 Ga0466958_0035988
295 Ga0495653_0027090
296 Ga0495653_0037425
297 Ga0495628_0024647
298 Ga0495630_0017234
299 Ga0495630_0117744
300 Ga0495640_0166631
301 Ga0495621_0029189
302 Ga0495656_0000490
303 Ga0495634_0009518
304 Ga0495634_0037775
305 Ga0495635_0118004
306 Ga0495657_0010174
307 Ga0495657_0101402
308 Ga0495623_0013474
309 Ga0495613_0001114
310 Ga0495674_0021609
311 Ga0495672_0000955
312 Ga0495680_0006119
313 Ga0495675_0031990
314 Ga0495593_0035211
315 Ga0496101_0004714
316 Ga0496102_0107087
317 Ga0496104_0023611
318 Ga0496105_0008169
319 Ga0496108_0059059
320 Ga0496110_0029812
321 Ga0496111_0037149
322 Ga0496112_0009266
323 Ga0496114_0062610
324 Ga0496115_0052957
325 Ga0501031_0032560
326 Ga0501033_0006339
327 Ga0501033_0009938
328 Ga0501033_0014764
329 Ga0501036_0010076
330 Ga0501036_0056215
331 Ga0501036_0122888
332 Ga0501038_0034247
333 Ga0501038_0045418
334 Ga0501039_0005016
335 Ga0501039_0067436
336 Ga0501039_0114424
337 Ga0501040_0010722
338 Ga0501040_0049581
339 Ga0501041_0003397
340 Ga0501041_0004555
341 Ga0501041_0042557
342 Ga0501042_0045443
343 Ga0501043_0071726
344 Ga0501046_0141557
345 Ga0501047_0012673
346 Ga0501048_0060657
347 Ga0501048_0204446
348 Ga0501068_0004896
349 Ga0501068_0023877
350 Ga0501068_0046926
351 Ga0501069_0000887
352 Ga0501069_0060891
353 Ga0501070_0001336
354 Ga0501071_0034227
355 Ga0501071_0146332
356 Ga0501072_0011262
357 Ga0501072_0085080
358 Ga0501073_0032386
359 Ga0501074_0124885
360 Ga0501075_0001414
361 Ga0501075_0004514
362 Ga0501075_0013053
363 Ga0501076_0005461
364 Ga0501076_0158675
365 Ga0501077_0035801
366 Ga0501077_0094536
367 Ga0501079_0006171
368 Ga0501079_0017059
369 Ga0501079_0023995
370 Ga0501080_0003551
371 Ga0501081_0047719
372 Ga0501083_0000827
373 Ga0501044_0003095
374 Ga0501045_0005503
375 Ga0501045_0014490
376 Ga0501045_0024891
377 nmdc:mga03n38_1223_c1
378 nmdc:mga0yw44_140_c1
379 nmdc:mga05p37_134310_c1
380 nmdc:mga05p37_29723_c1
381 nmdc:mga05p37_44154_c1
382 nmdc:mga09592_2957_c1
383 nmdc:mga09592_47867_c1
384 nmdc:mga09592_92994_c1
385 nmdc:mga0qj67_358_c1
386 nmdc:mga06r32_107680_c1
387 nmdc:mga06r32_21489_c1
388 nmdc:mga06r32_32481_c1
389 nmdc:mga06r32_46_c1
390 nmdc:mga06r32_50565_c1
391 nmdc:mga08y16_157814_c1
392 nmdc:mga0n895_3299_c1
393 nmdc:mga0a205_2894_c1
394 Ga0495601_0042733
395 Ga0495619_0001955
396 Ga0495619_0053156
397 Ga0495619_0068670
398 Ga0495619_0084923
399 Ga0500566_0000051
400 Ga0500568_0000032
401 Ga0500568_0008299
402 Ga0500616_0000957
403 Ga0501084_0000055
404 Ga0501084_0000579
405 Ga0501084_0001104
406 Ga0501082_0005872
407 Ga0501082_0083724
408 Ga0501082_0084140
409 Ga0501082_0118012
410 Ga0501082_0157829
411 Ga0530510_0009084
412 Ga0530510_0034144
413 Ga0530510_0066297
414 Ga0530510_0071036
415 Ga0530510_0077354
416 2816503389

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

397

546

0.96

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

142

259

0.95

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

412

534

0.95

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

263

382

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ciw-assembly1.cif.gz_B methylsuccinyl-coa dehydrogenase from pseudomonas migulae with bound fad and (2s)-methylsuccinyl-coa 0.9533 4 523
5lnx-assembly2.cif.gz_G crystal structure of mmgc, an acyl-coa dehydrogenase from bacillus subtilis. 0.9497 132 520
5lnx-assembly2.cif.gz_E crystal structure of mmgc, an acyl-coa dehydrogenase from bacillus subtilis. 0.9453 131 520
1rx0-assembly1.cif.gz_C crystal structure of isobutyryl-coa dehydrogenase complexed with substrate/ligand. 0.9442 125 521
4n5f-assembly1.cif.gz_A-2 crystal structure of a putative acyl-coa dehydrogenase with bound fadh2 from burkholderia cenocepacia j2315 0.9437 126 518
ID Description Score Start End Superfamily
af_P95187_333_468_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9404 385 502 1.20.140.10
af_A0A0K3AQR2_269_362_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9404 378 464 1.20.140.10
af_P96397_240_357_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9396 378 492 1.20.140.10
af_I6Y4R2_239_388_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9361 378 522 1.20.140.10
1ukwB03 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9354 371 520 1.20.140.10
ID Description Score Start End GO Terms
AF-A0A351EM13-F1-model_v4 Acyl-CoA dehydrogenase 0.9888 5 523 GO:0003995
GO:0050660
AF-A0A2E9XAS2-F1-model_v4 Acyl-CoA dehydrogenase 0.9785 5 213 GO:0003995
GO:0050660
AF-A0A2E9XAS2-F1-model_v4 Acyl-CoA dehydrogenase 0.9473 5 213 GO:0003995
GO:0050660
AF-A0A348ZGA2-F1-model_v4 Acyl-CoA dehydrogenase 0.9461 386 525 GO:0003995
AF-A0A1I7BVM5-F1-model_v4 deleted 0.9457 126 522

Map