F310394

General Info

Members Datasets Scaffolds Average Seq Length
202 121 404 370

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0002441|Ga0501031_0002441_8592_9764
Length 390
Sequence MQAAKKQSMTTITSPRGTPHQVTEATPPAVPASPLDAEDLRARVDRALAALLHQELSALGFLGADAGPVTDALTRFALESGKRLRPAFVYWGYRGAGGAATGPQADAAVKAACSVELLHVCALIHDDIMDGSEVRRGRPAMHVGFAGLHRGQPWRGDPAAFGAGAAMLMGDLAFTWADVALAEAGLPDDRLAAALRVFNRLRSELMGGQYLDLVEARRGAPDEDAVRRVLTYKSGKYTIERPLHLGLALAGGDPGLAEGYSAYGLPLGEAFQLRDDVLGVFGAPEVTGKPAGDDLREGKETYLVMLTRRRADRAGRHLLEGALGNAKLSEDEVAELRRLITGCGALAATEARIGQLLAEAKAALAAVGGIDEAARTTLAALADHVTDRSA

Samples

Sample ID Description Type Environment
1 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
11 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
12 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
13 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
14 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
15 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
17 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
18 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
19 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
20 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
21 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
26 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
27 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
28 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
29 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
30 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
31 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
32 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
33 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
34 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
35 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
36 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
37 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
38 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
39 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
40 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
41 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
44 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
45 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
46 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
47 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
48 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
49 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
50 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
51 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
52 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
53 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
54 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
55 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
56 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
57 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
58 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
59 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
63 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
64 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
65 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
66 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
67 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
68 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
84 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
85 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
86 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
87 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
88 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
89 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
90 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
91 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
94 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
104 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
108 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
111 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
112 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
113 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
114 2739367653 Kocuria sp. OV113 Isolate Unclassified
115 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
116 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
117 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
118 2808606394 Promicromonospora sp. C35 Isolate Unclassified
119 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
120 2857727296 Kocuria sp. R-72562 Isolate Unclassified
121 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.56
Metatranscriptomes 0.99
Isolates 5.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.98
Nodule 0
Rhizoplane 0.99
Rhizosphere 89.6
Stem 0
Stem Tuber 0
Unclassified 0.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501031_0002441 3300049568 Bacteria 11837
2 JGI25406J46586_10007587 3300003203 Bacteria 4941
3 Ga0070658_10099641 3300005327 Bacteria 2401
4 Ga0070683_100401783 3300005329 Bacteria 1307
5 Ga0070707_100177860 3300005468 Bacteria 2074
6 Ga0070697_100386210 3300005536 Bacteria 1213
7 Ga0081455_10000249 3300005937 Bacteria 70419
8 Ga0081455_10020332 3300005937 Bacteria 6256
9 Ga0081538_10001999 3300005981 Bacteria 20358
10 Ga0081538_10003171 3300005981 Bacteria 15640
11 Ga0081538_10006260 3300005981 Bacteria 10523
12 Ga0081538_10007220 3300005981 Bacteria 9645
13 Ga0081538_10007590 3300005981 Bacteria 9354
14 Ga0081538_10009813 3300005981 Bacteria 7922
15 Ga0081538_10013183 3300005981 Bacteria 6562
16 Ga0081538_10056960 3300005981 Bacteria 2284
17 Ga0081538_10072064 3300005981 Unclassified 1896
18 Ga0081538_10096092 3300005981 Bacteria 1511
19 Ga0081539_10002457 3300005985 Bacteria 26107
20 Ga0081539_10006547 3300005985 Bacteria 11111
21 Ga0081539_10053371 3300005985 Bacteria 2264
22 Ga0075428_100431696 3300006844 Bacteria 1411
23 Ga0075430_100001375 3300006846 Bacteria 19744
24 Ga0075431_100009444 3300006847 Bacteria 9790
25 Ga0075433_10027119 3300006852 Bacteria 4856
26 Ga0075434_100081988 3300006871 Bacteria 3222
27 Ga0114129_10036036 3300009147 Bacteria 6987
28 Ga0114129_10111042 3300009147 Bacteria 3784
29 Ga0114129_10366719 3300009147 Bacteria 1905
30 Ga0105237_10252616 3300009545 Bacteria 1765
31 Ga0163162_10042667 3300013306 Bacteria 4541
32 Ga0182005_1028278 3300015265 Bacteria 1529
33 Ga0206356_11805572 3300020070 Bacteria 1247
34 Ga0206354_10622593 3300020081 Bacteria 1841
35 Ga0207671_10156180 3300025914 Bacteria 1765
36 Ga0207706_10004912 3300025933 Bacteria 12501
37 Ga0207712_10187593 3300025961 Bacteria 1630
38 Ga0207675_100000598 3300026118 Bacteria 35276
39 Ga0207428_10002637 3300027907 Bacteria 17880
40 Ga0265334_10000759 3300028573 Bacteria 16173
41 Ga0314311_1011850 3300030733 Bacteria 1924
42 Ga0316181_1279625 3300030744 Bacteria 3052
43 Ga0316182_1008319 3300030745 Bacteria 4996
44 Ga0265340_10000297 3300031247 Bacteria 26067
45 Ga0307513_10000561 3300031456 Bacteria 53247
46 Ga0307408_100023641 3300031548 Bacteria 4189
47 Ga0307408_100236539 3300031548 Bacteria 1499
48 Ga0307405_10011881 3300031731 Bacteria 4584
49 Ga0307405_10012475 3300031731 Bacteria 4500
50 Ga0307405_10036707 3300031731 Bacteria 2938
51 Ga0307405_10164797 3300031731 Bacteria 1574
52 Ga0307413_10004203 3300031824 Bacteria 6222
53 Ga0307413_10010605 3300031824 Bacteria 4482
54 Ga0307413_10063457 3300031824 Bacteria 2290
55 Ga0307410_10013613 3300031852 Bacteria 4753
56 Ga0307410_10088874 3300031852 Bacteria 2188
57 Ga0307406_10003899 3300031901 Bacteria 8115
58 Ga0307406_10005355 3300031901 Bacteria 7023
59 Ga0307406_10057388 3300031901 Bacteria 2497
60 Ga0307406_10069940 3300031901 Bacteria 2296
61 Ga0307407_10001645 3300031903 Bacteria 8263
62 Ga0307407_10061220 3300031903 Bacteria 2199
63 Ga0307407_10079616 3300031903 Bacteria 1977
64 Ga0307409_100007196 3300031995 Bacteria 6632
65 Ga0307409_100020793 3300031995 Bacteria 4482
66 Ga0307409_100021453 3300031995 Bacteria 4428
67 Ga0307409_100172447 3300031995 Bacteria 1905
68 Ga0307416_100003794 3300032002 Bacteria 8972
69 Ga0307416_100023043 3300032002 Bacteria 4509
70 Ga0307416_100086924 3300032002 Bacteria 2667
71 Ga0307416_100156987 3300032002 Bacteria 2096
72 Ga0307414_10015528 3300032004 Bacteria 4597
73 Ga0307411_10002605 3300032005 Bacteria 8059
74 Ga0307415_100002593 3300032126 Bacteria 9030
75 Ga0307415_100003628 3300032126 Bacteria 7889
76 Ga0307415_100019887 3300032126 Bacteria 4086
77 Ga0395899_0087606 3300037312 Bacteria 2259
78 Ga0395900_0083056 3300037418 Bacteria 3291
79 Ga0395905_0014898 3300037471 Bacteria 7418
80 Ga0395901_0011443 3300038443 Bacteria 8990
81 Ga0395901_0124763 3300038443 Bacteria 2705
82 Ga0436365_1883927 3300039437 Bacteria 1910
83 Ga0439465_0011870 3300041413 Bacteria 2730
84 Ga0451833_0237307 3300041491 Bacteria 3968
85 Ga0451833_0267233 3300041491 Bacteria 1964
86 Ga0451837_1087312 3300041494 Bacteria 7279
87 Ga0439445_0012618 3300042004 Bacteria 2034
88 Ga0439448_0000309 3300042005 Bacteria 10765
89 Ga0439463_000525 3300042016 Bacteria 10773
90 Ga0439463_011878 3300042016 Bacteria 2139
91 Ga0450888_005587 3300042126 Bacteria 1346
92 Ga0450905_003516 3300042142 Bacteria 2058
93 Ga0439434_0073878 3300042435 Bacteria 1076
94 Ga0439444_0001051 3300042437 Bacteria 3424
95 Ga0439460_0002248 3300042461 Bacteria 4642
96 Ga0439440_0000096 3300042993 Bacteria 11616
97 Ga0439440_0005179 3300042993 Bacteria 2579
98 Ga0439440_0029577 3300042993 Bacteria 1286
99 Ga0466961_0043091 3300044693 Bacteria 2891
100 Ga0466958_0156114 3300045836 Bacteria 1440
101 Ga0495629_0148456 3300046459 Bacteria 1630
102 Ga0495596_0057343 3300046500 Bacteria 1520
103 Ga0495607_0089237 3300046501 Bacteria 1674
104 Ga0495676_0127984 3300047321 Bacteria 1838
105 Ga0496105_0181892 3300048908 Bacteria 1721
106 Ga0496114_0101551 3300048917 Bacteria 2456
107 Ga0496124_0054882 3300048927 Bacteria 3370
108 Ga0501031_0004661 3300049568 Bacteria 8904
109 Ga0501032_0026217 3300049569 Bacteria 4012
110 Ga0501032_0086028 3300049569 Bacteria 2090
111 Ga0501033_0006671 3300049570 Bacteria 9022
112 Ga0501034_0013799 3300049571 Bacteria 8314
113 Ga0501036_0003134 3300049572 Bacteria 13190
114 Ga0501036_0055910 3300049572 Bacteria 3343
115 Ga0501036_0080665 3300049572 Bacteria 2750
116 Ga0501037_0004202 3300049573 Bacteria 10442
117 Ga0501037_0041910 3300049573 Bacteria 3365
118 Ga0501037_0064683 3300049573 Bacteria 2665
119 Ga0501038_0005303 3300049574 Bacteria 11976
120 Ga0501038_0050152 3300049574 Bacteria 3608
121 Ga0501039_0002297 3300049575 Bacteria 14185
122 Ga0501039_0004249 3300049575 Bacteria 10779
123 Ga0501040_0000529 3300049576 Bacteria 22996
124 Ga0501040_0002274 3300049576 Bacteria 12341
125 Ga0501040_0003649 3300049576 Bacteria 9964
126 Ga0501041_0004447 3300049577 Bacteria 8113
127 Ga0501042_0001473 3300049578 Bacteria 13887
128 Ga0501042_0019607 3300049578 Bacteria 4699
129 Ga0501043_0035854 3300049579 Bacteria 3903
130 Ga0501046_0000537 3300049580 Bacteria 37625
131 Ga0501046_0012614 3300049580 Bacteria 7185
132 Ga0501046_0150479 3300049580 Bacteria 1756
133 Ga0501047_0095864 3300049581 Bacteria 2845
134 Ga0501048_0000393 3300049582 Bacteria 30406
135 Ga0501048_0002925 3300049582 Bacteria 13048
136 Ga0501048_0011883 3300049582 Bacteria 6492
137 Ga0501068_0019955 3300049584 Bacteria 3900
138 Ga0501068_0159083 3300049584 Bacteria 1423
139 Ga0501070_0000059 3300049586 Bacteria 94646
140 Ga0501070_0057338 3300049586 Bacteria 3229
141 Ga0501070_0095304 3300049586 Bacteria 2462
142 Ga0501071_0002011 3300049587 Bacteria 12163
143 Ga0501071_0003184 3300049587 Bacteria 10211
144 Ga0501071_0033984 3300049587 Bacteria 3626
145 Ga0501071_0081286 3300049587 Bacteria 2371
146 Ga0501072_0002620 3300049588 Bacteria 13475
147 Ga0501072_0008358 3300049588 Bacteria 7860
148 Ga0501072_0211909 3300049588 Bacteria 1544
149 Ga0501074_0005608 3300049590 Bacteria 9033
150 Ga0501075_0003240 3300049591 Bacteria 10895
151 Ga0501075_0007081 3300049591 Bacteria 7752
152 Ga0501076_0001128 3300049592 Bacteria 17637
153 Ga0501076_0001396 3300049592 Bacteria 16177
154 Ga0501077_0001421 3300049593 Bacteria 14377
155 Ga0501077_0037425 3300049593 Bacteria 3090
156 Ga0501079_0000180 3300049741 Bacteria 35938
157 Ga0501079_0000870 3300049741 Bacteria 20712
158 Ga0501080_0000061 3300049742 Bacteria 70965
159 Ga0501080_0010710 3300049742 Bacteria 8389
160 Ga0501081_0003006 3300049743 Bacteria 10707
161 Ga0501081_0027695 3300049743 Bacteria 3822
162 Ga0501081_0028944 3300049743 Bacteria 3740
163 Ga0501081_0063600 3300049743 Bacteria 2561
164 Ga0501083_0030166 3300049744 Bacteria 3727
165 Ga0501083_0042791 3300049744 Bacteria 3070
166 Ga0501035_0013129 3300049822 Bacteria 7644
167 Ga0501035_0019814 3300049822 Bacteria 6180
168 Ga0501035_0111977 3300049822 Bacteria 2391
169 Ga0501044_0081561 3300049823 Bacteria 3274
170 Ga0501045_0002146 3300049824 Bacteria 13346
171 Ga0501045_0003816 3300049824 Bacteria 10361
172 Ga0501045_0030731 3300049824 Bacteria 3888
173 nmdc:mga00v17_999_c2 3300050491 Bacteria 12935
174 nmdc:mga05p37_21695_c1 3300050507 Bacteria 7780
175 nmdc:mga05p37_244739_c1 3300050507 Bacteria 2154
176 nmdc:mga05p37_59769_c1 3300050507 Bacteria 4694
177 nmdc:mga09592_4090_c1 3300050508 Bacteria 11778
178 nmdc:mga06r32_16152_c1 3300050510 Bacteria 6801
179 nmdc:mga08y16_2634_c1 3300050511 Bacteria 18444
180 nmdc:mga0n895_114791_c1 3300050512 Bacteria 2711
181 Ga0500641_0000776 3300053096 Bacteria 11565
182 Ga0500616_0000832 3300053153 Bacteria 34657
183 Ga0500616_0029095 3300053153 Bacteria 3041
184 Ga0501084_0000409 3300054114 Bacteria 33147
185 Ga0501084_0010676 3300054114 Bacteria 7601
186 Ga0590071_006586 3300059421 Bacteria 2761
187 Ga0590077_006211 3300059426 Bacteria 2450
188 Ga0501082_0001102 3300060353 Bacteria 23872
189 Ga0501082_0008162 3300060353 Bacteria 9033
190 Ga0530510_0000934 3300061734 Bacteria 19320
191 Ga0530510_0014962 3300061734 Bacteria 5477
192 2644457482 2643221681 Bacteria 3707866
193 2645719297 2643221961 Bacteria 3919167
194 2645726214 2643221962 Bacteria 3874254
195 2739602118 2739367653 Bacteria 2780952
196 2739606038 2739367654 Bacteria 6049412
197 2760307135 2758568522 Bacteria 5953541
198 2760624400 2758568621 Bacteria 5967089
199 2809029270 2808606394 Bacteria 6248540
200 2817509405 2816332305 Bacteria 2697803
201 2857728679 2857727296 Bacteria 2745552
202 8056583759 8056579771 Bacteria 5840325
203 Ga0501031_0002441
204 JGI25406J46586_10007587
205 Ga0070658_10099641
206 Ga0070683_100401783
207 Ga0070707_100177860
208 Ga0070697_100386210
209 Ga0081455_10000249
210 Ga0081455_10020332
211 Ga0081538_10001999
212 Ga0081538_10003171
213 Ga0081538_10006260
214 Ga0081538_10007220
215 Ga0081538_10007590
216 Ga0081538_10009813
217 Ga0081538_10013183
218 Ga0081538_10056960
219 Ga0081538_10072064
220 Ga0081538_10096092
221 Ga0081539_10002457
222 Ga0081539_10006547
223 Ga0081539_10053371
224 Ga0075428_100431696
225 Ga0075430_100001375
226 Ga0075431_100009444
227 Ga0075433_10027119
228 Ga0075434_100081988
229 Ga0114129_10036036
230 Ga0114129_10111042
231 Ga0114129_10366719
232 Ga0105237_10252616
233 Ga0163162_10042667
234 Ga0182005_1028278
235 Ga0206356_11805572
236 Ga0206354_10622593
237 Ga0207671_10156180
238 Ga0207706_10004912
239 Ga0207712_10187593
240 Ga0207675_100000598
241 Ga0207428_10002637
242 Ga0265334_10000759
243 Ga0314311_1011850
244 Ga0316181_1279625
245 Ga0316182_1008319
246 Ga0265340_10000297
247 Ga0307513_10000561
248 Ga0307408_100023641
249 Ga0307408_100236539
250 Ga0307405_10011881
251 Ga0307405_10012475
252 Ga0307405_10036707
253 Ga0307405_10164797
254 Ga0307413_10004203
255 Ga0307413_10010605
256 Ga0307413_10063457
257 Ga0307410_10013613
258 Ga0307410_10088874
259 Ga0307406_10003899
260 Ga0307406_10005355
261 Ga0307406_10057388
262 Ga0307406_10069940
263 Ga0307407_10001645
264 Ga0307407_10061220
265 Ga0307407_10079616
266 Ga0307409_100007196
267 Ga0307409_100020793
268 Ga0307409_100021453
269 Ga0307409_100172447
270 Ga0307416_100003794
271 Ga0307416_100023043
272 Ga0307416_100086924
273 Ga0307416_100156987
274 Ga0307414_10015528
275 Ga0307411_10002605
276 Ga0307415_100002593
277 Ga0307415_100003628
278 Ga0307415_100019887
279 Ga0395899_0087606
280 Ga0395900_0083056
281 Ga0395905_0014898
282 Ga0395901_0011443
283 Ga0395901_0124763
284 Ga0436365_1883927
285 Ga0439465_0011870
286 Ga0451833_0237307
287 Ga0451833_0267233
288 Ga0451837_1087312
289 Ga0439445_0012618
290 Ga0439448_0000309
291 Ga0439463_000525
292 Ga0439463_011878
293 Ga0450888_005587
294 Ga0450905_003516
295 Ga0439434_0073878
296 Ga0439444_0001051
297 Ga0439460_0002248
298 Ga0439440_0000096
299 Ga0439440_0005179
300 Ga0439440_0029577
301 Ga0466961_0043091
302 Ga0466958_0156114
303 Ga0495629_0148456
304 Ga0495596_0057343
305 Ga0495607_0089237
306 Ga0495676_0127984
307 Ga0496105_0181892
308 Ga0496114_0101551
309 Ga0496124_0054882
310 Ga0501031_0004661
311 Ga0501032_0026217
312 Ga0501032_0086028
313 Ga0501033_0006671
314 Ga0501034_0013799
315 Ga0501036_0003134
316 Ga0501036_0055910
317 Ga0501036_0080665
318 Ga0501037_0004202
319 Ga0501037_0041910
320 Ga0501037_0064683
321 Ga0501038_0005303
322 Ga0501038_0050152
323 Ga0501039_0002297
324 Ga0501039_0004249
325 Ga0501040_0000529
326 Ga0501040_0002274
327 Ga0501040_0003649
328 Ga0501041_0004447
329 Ga0501042_0001473
330 Ga0501042_0019607
331 Ga0501043_0035854
332 Ga0501046_0000537
333 Ga0501046_0012614
334 Ga0501046_0150479
335 Ga0501047_0095864
336 Ga0501048_0000393
337 Ga0501048_0002925
338 Ga0501048_0011883
339 Ga0501068_0019955
340 Ga0501068_0159083
341 Ga0501070_0000059
342 Ga0501070_0057338
343 Ga0501070_0095304
344 Ga0501071_0002011
345 Ga0501071_0003184
346 Ga0501071_0033984
347 Ga0501071_0081286
348 Ga0501072_0002620
349 Ga0501072_0008358
350 Ga0501072_0211909
351 Ga0501074_0005608
352 Ga0501075_0003240
353 Ga0501075_0007081
354 Ga0501076_0001128
355 Ga0501076_0001396
356 Ga0501077_0001421
357 Ga0501077_0037425
358 Ga0501079_0000180
359 Ga0501079_0000870
360 Ga0501080_0000061
361 Ga0501080_0010710
362 Ga0501081_0003006
363 Ga0501081_0027695
364 Ga0501081_0028944
365 Ga0501081_0063600
366 Ga0501083_0030166
367 Ga0501083_0042791
368 Ga0501035_0013129
369 Ga0501035_0019814
370 Ga0501035_0111977
371 Ga0501044_0081561
372 Ga0501045_0002146
373 Ga0501045_0003816
374 Ga0501045_0030731
375 nmdc:mga00v17_999_c2
376 nmdc:mga05p37_21695_c1
377 nmdc:mga05p37_244739_c1
378 nmdc:mga05p37_59769_c1
379 nmdc:mga09592_4090_c1
380 nmdc:mga06r32_16152_c1
381 nmdc:mga08y16_2634_c1
382 nmdc:mga0n895_114791_c1
383 Ga0500641_0000776
384 Ga0500616_0000832
385 Ga0500616_0029095
386 Ga0501084_0000409
387 Ga0501084_0010676
388 Ga0590071_006586
389 Ga0590077_006211
390 Ga0501082_0001102
391 Ga0501082_0008162
392 Ga0530510_0000934
393 Ga0530510_0014962
394 2644457482
395 2645719297
396 2645726214
397 2739602118
398 2739606038
399 2760307135
400 2760624400
401 2809029270
402 2817509405
403 2857728679
404 8056583759

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

68

340

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9523 26 365
3lk5-assembly1.cif.gz_A-2 crystal structure of putative geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum 0.9339 26 365
8f8k-assembly1.cif.gz_A the structure of rv2173 from m. tuberculosis with ipp bound 0.9269 31 361
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9055 26 365
5jfq-assembly1.cif.gz_B geranylgeranyl pyrophosphate synthetase from archaeon geoglobus acetivorans 0.8931 29 359
ID Description Score Start End Superfamily
af_O53507_1_351_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9489 33 365 1.10.600.10
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9452 26 365 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9168 30 356 1.10.600.10
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9036 26 365 1.10.600.10
af_O53507_1_351_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8988 33 365 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A7K0L6A9-F1-model_v4 Polyprenyl synthetase family protein 0.9812 106 354 GO:0004659
GO:0008299
AF-A0A4P5RLY1-F1-model_v4 Geranylgeranyl pyrophosphate synthase 0.9807 26 365 GO:0004659
GO:0008299
AF-A0A6L6CZG4-F1-model_v4 Polyprenyl synthetase family protein 0.9801 51 340 GO:0004659
GO:0008299
AF-A0A0R2Q6P2-F1-model_v4 Polyprenyl synthetase 0.9798 132 355 GO:0004659
GO:0008299
AF-A0A3E2YNQ8-F1-model_v4 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) 0.9797 24 365 GO:0004337
GO:0008299

Map