F309135

General Info

Members Datasets Scaffolds Average Seq Length
201 140 402 148

Family's Representative Sequence

Representative Sequence 3300059660|Ga0587124_006928|Ga0587124_006928_374_889
Length 171
Sequence MTTTSHPTGAPPSVHKFPQRSPAVSNQSRGEPIEILLVEDSRDDADLTIDALRDGRVRNRITHLEDGVDALAFLRREGKYHDAPRPDLILLDLGLPRKSGREVLAEIKQSPDLRRIPVVIMTSSDDEKDILAAYNLFVNCYVTKPVDLDQFIGVVKSIEHFWFSVVKLPAA

Samples

Sample ID Description Type Environment
1 3300059660 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 161R_SW_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
26 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
27 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
28 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
46 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
47 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
48 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
49 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
64 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
65 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
66 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
84 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
85 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
86 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
91 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
92 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
93 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
94 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
97 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
98 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
104 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
105 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
106 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
107 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
108 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
109 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
110 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
113 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
116 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
117 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
118 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
119 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
120 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
121 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
122 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
123 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300059624 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300059626 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 173R_CD_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300059653 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 145R_CW_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
132 2643221660 Methylibium sp. Root1272 Isolate Unclassified
133 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
134 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
135 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
136 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
137 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
138 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
139 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere
140 8054913762 Frankia gtarii Agncl-10 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.54
Metatranscriptomes 3.98
Isolates 4.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.97
Nodule 0.5
Rhizoplane 1.49
Rhizosphere 84.08
Stem 0
Stem Tuber 0
Unclassified 10.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0587124_006928 3300059660 Bacteria 944
2 JGI24740J21852_10000256 3300001979 Bacteria 22585
3 JGI24739J22299_10026706 3300001989 Bacteria 2024
4 JGI25154J39366_1000020 3300002738 Bacteria 233181
5 JGI25157J39369_1002636 3300002741 Bacteria 4218
6 JGI25406J46586_10007651 3300003203 Bacteria 4917
7 JGI25153J46596_10010165 3300003215 Unclassified 4283
8 rootL2_10356633 3300003322 Bacteria 1472
9 Ga0065165_1017918 3300005262 Bacteria 2587
10 Ga0065704_10409380 3300005289 Bacteria 743
11 Ga0065707_10017080 3300005295 Bacteria 1375
12 Ga0065707_10418328 3300005295 Bacteria 826
13 Ga0065707_10657780 3300005295 Bacteria 656
14 Ga0070690_100043803 3300005330 Bacteria 2839
15 Ga0070689_100151143 3300005340 Bacteria 1873
16 Ga0070703_10015211 3300005406 Bacteria 2201
17 Ga0070703_10269824 3300005406 Bacteria 698
18 Ga0070713_101723575 3300005436 Bacteria 608
19 Ga0070711_100513582 3300005439 Bacteria 989
20 Ga0070705_100006346 3300005440 Bacteria 5793
21 Ga0070694_100008206 3300005444 Bacteria 6383
22 Ga0070708_100759877 3300005445 Bacteria 911
23 Ga0070706_100058209 3300005467 Bacteria 3566
24 Ga0070706_100088899 3300005467 Bacteria 2864
25 Ga0070706_101367757 3300005467 Bacteria 648
26 Ga0070707_100015747 3300005468 Bacteria 7097
27 Ga0070707_100388955 3300005468 Unclassified 1354
28 Ga0070698_100003434 3300005471 Bacteria 17420
29 Ga0070698_100463927 3300005471 Bacteria 1203
30 Ga0070699_100065702 3300005518 Unclassified 3148
31 Ga0070699_100082452 3300005518 Bacteria 2804
32 Ga0070699_101185711 3300005518 Bacteria 700
33 Ga0070697_100090734 3300005536 Unclassified 2526
34 Ga0070697_100099469 3300005536 Bacteria 2414
35 Ga0070697_101078881 3300005536 Bacteria 714
36 Ga0070686_101530161 3300005544 Unclassified 563
37 Ga0070695_100003808 3300005545 Bacteria 8797
38 Ga0070696_100098516 3300005546 Unclassified 2091
39 Ga0070693_100197843 3300005547 Bacteria 1303
40 Ga0070665_100462833 3300005548 Bacteria 1278
41 Ga0070704_100191407 3300005549 Bacteria 1645
42 Ga0070704_100250656 3300005549 Unclassified 1454
43 Ga0081539_10000643 3300005985 Bacteria 70438
44 Ga0070717_10491202 3300006028 Bacteria 1109
45 Ga0075365_10017295 3300006038 Bacteria 4408
46 Ga0070716_100671375 3300006173 Bacteria 788
47 Ga0097621_101076737 3300006237 Bacteria 754
48 Ga0075433_10001422 3300006852 Bacteria 17633
49 Ga0075433_10040734 3300006852 Bacteria 4022
50 Ga0075433_10867270 3300006852 Unclassified 788
51 Ga0075434_100003187 3300006871 Bacteria 14636
52 Ga0075434_100104149 3300006871 Bacteria 2847
53 Ga0075434_100143026 3300006871 Bacteria 2412
54 Ga0075429_100085955 3300006880 Unclassified 2741
55 Ga0075436_100083619 3300006914 Unclassified 2215
56 Ga0075436_100157700 3300006914 Unclassified 1599
57 Ga0075436_100748750 3300006914 Bacteria 726
58 Ga0075435_100111903 3300007076 Unclassified 2271
59 Ga0075435_100314170 3300007076 Bacteria 1341
60 Ga0075435_100790952 3300007076 Bacteria 826
61 Ga0099794_10060480 3300007265 Bacteria 1840
62 Ga0099794_10198219 3300007265 Bacteria 1028
63 Ga0114129_10048753 3300009147 Bacteria 5952
64 Ga0157370_10272077 3300013104 Bacteria 1565
65 Ga0163163_10079942 3300014325 Bacteria 3268
66 Ga0183365_10001 3300015684 Bacteria 2090444
67 Ga0209646_1000005 3300025246 Bacteria 717627
68 Ga0209026_1000198 3300025250 Bacteria 83656
69 Ga0209129_1021636 3300025258 Unclassified 1174
70 Ga0209233_1016295 3300025261 Bacteria 2050
71 Ga0209758_1004788 3300025297 Bacteria 10942
72 Ga0207426_1022455 3300025302 Bacteria 2165
73 Ga0207653_10027270 3300025885 Bacteria 1833
74 Ga0207684_10004599 3300025910 Bacteria 12964
75 Ga0207646_10001414 3300025922 Bacteria 29802
76 Ga0207646_10569557 3300025922 Bacteria 1018
77 Ga0207700_10882408 3300025928 Bacteria 800
78 Ga0207665_10527412 3300025939 Bacteria 915
79 Ga0207641_12124276 3300026088 Bacteria 562
80 Ga0268266_10799066 3300028379 Unclassified 911
81 Ga0265318_10000670 3300028577 Bacteria 23349
82 Ga0265338_10137819 3300028800 Bacteria 1915
83 Ga0265330_10103203 3300031235 Bacteria 1220
84 Ga0265332_10182565 3300031238 Bacteria 874
85 Ga0265320_10111937 3300031240 Bacteria 1250
86 Ga0265325_10000244 3300031241 Bacteria 38515
87 Ga0265339_10081776 3300031249 Bacteria 1707
88 Ga0265331_10045503 3300031250 Bacteria 2119
89 Ga0265316_10001938 3300031344 Bacteria 21722
90 Ga0265316_10035977 3300031344 Bacteria 4006
91 Ga0307408_100021372 3300031548 Bacteria 4379
92 Ga0265313_10003729 3300031595 Bacteria 12121
93 Ga0265313_10039030 3300031595 Bacteria 2359
94 Ga0316579_10324078 3300031691 Unclassified 745
95 Ga0265314_10016441 3300031711 Bacteria 5843
96 Ga0307405_10189600 3300031731 Bacteria 1484
97 Ga0307413_10000175 3300031824 Bacteria 18128
98 Ga0307413_10134403 3300031824 Bacteria 1698
99 Ga0307413_10288823 3300031824 Bacteria 1237
100 Ga0307413_10562591 3300031824 Bacteria 927
101 Ga0307413_10849404 3300031824 Bacteria 771
102 Ga0307410_10027203 3300031852 Bacteria 3612
103 Ga0307410_10068075 3300031852 Bacteria 2458
104 Ga0307410_10127350 3300031852 Bacteria 1866
105 Ga0307410_10343475 3300031852 Bacteria 1190
106 Ga0307406_10011715 3300031901 Bacteria 4978
107 Ga0307406_10061047 3300031901 Bacteria 2433
108 Ga0307406_10066186 3300031901 Bacteria 2351
109 Ga0307407_10012155 3300031903 Bacteria 4129
110 Ga0307407_11495561 3300031903 Bacteria 534
111 Ga0307412_10086799 3300031911 Bacteria 2178
112 Ga0307409_100007907 3300031995 Bacteria 6404
113 Ga0307409_100009915 3300031995 Bacteria 5883
114 Ga0307409_100020860 3300031995 Bacteria 4477
115 Ga0307409_100728391 3300031995 Bacteria 994
116 Ga0307409_101109951 3300031995 Bacteria 812
117 Ga0307416_100854900 3300032002 Bacteria 1008
118 Ga0307416_102388916 3300032002 Unclassified 628
119 Ga0307414_10011600 3300032004 Bacteria 5176
120 Ga0307414_10135542 3300032004 Bacteria 1919
121 Ga0307411_10000968 3300032005 Bacteria 11006
122 Ga0307411_10194999 3300032005 Bacteria 1550
123 Ga0307415_100025123 3300032126 Bacteria 3733
124 Ga0307415_100040891 3300032126 Bacteria 3075
125 Ga0307415_100042642 3300032126 Bacteria 3021
126 Ga0307415_100170242 3300032126 Bacteria 1698
127 Ga0373954_0272439 3300035118 Bacteria 834
128 Ga0316582_0330534 3300036647 Bacteria 1048
129 Ga0400491_15056 3300038727 Unclassified 1675
130 Ga0436360_0404794 3300039438 Bacteria 798
131 Ga0436361_0794919 3300039447 Bacteria 15304
132 Ga0450891_004410 3300042129 Bacteria 1319
133 Ga0466966_0151267 3300044684 Bacteria 1415
134 Ga0466961_0511881 3300044693 Bacteria 724
135 Ga0466963_0048832 3300044694 Bacteria 2798
136 Ga0466963_0079198 3300044694 Bacteria 2223
137 Ga0466963_0163513 3300044694 Bacteria 1550
138 Ga0466963_0210381 3300044694 Bacteria 1361
139 Ga0453684_0402723 3300044712 Bacteria 1532
140 Ga0466957_0144091 3300044842 Bacteria 1537
141 Ga0466960_0008818 3300044901 Bacteria 4142
142 Ga0451576_0002025 3300045051 Bacteria 32026
143 Ga0451576_0164969 3300045051 Bacteria 2312
144 Ga0451576_1849563 3300045051 Bacteria 624
145 Ga0466958_0340607 3300045836 Bacteria 965
146 Ga0466958_1181559 3300045836 Bacteria 500
147 Ga0466967_0080732 3300045976 Bacteria 2936
148 Ga0466967_0190505 3300045976 Bacteria 1938
149 Ga0466967_0301098 3300045976 Bacteria 1543
150 Ga0496103_0689216 3300048906 Bacteria 648
151 Ga0496114_0123647 3300048917 Bacteria 2227
152 Ga0496115_0028005 3300048918 Bacteria 4412
153 Ga0501034_0099951 3300049571 Bacteria 2895
154 Ga0501034_0201117 3300049571 Bacteria 1950
155 Ga0501070_0058435 3300049586 Bacteria 3197
156 Ga0501075_0125788 3300049591 Bacteria 1952
157 Ga0501076_0358041 3300049592 Bacteria 1199
158 Ga0501202_163758 3300049652 Bacteria 590
159 Ga0501216_168634 3300049660 Bacteria 529
160 Ga0501083_0001287 3300049744 Bacteria 16966
161 Ga0501268_123440 3300049765 Bacteria 576
162 Ga0501280_002822 3300049776 Bacteria 2796
163 nmdc:mga03683_239247_c1 3300050489 Bacteria 841
164 nmdc:mga00v17_405605_c1 3300050491 Bacteria 886
165 nmdc:mga0yw44_12634_c1 3300050492 Bacteria 4411
166 nmdc:mga05p37_1010025_c1 3300050507 Bacteria 882
167 nmdc:mga05p37_23361_c1 3300050507 Bacteria 7503
168 nmdc:mga06r32_61494_c1 3300050510 Bacteria 3615
169 nmdc:mga0n895_1248285_c1 3300050512 Bacteria 716
170 nmdc:mga0n895_29498_c1 3300050512 Bacteria 5234
171 nmdc:mga0rr50_441981_c1 3300050513 Bacteria 1102
172 nmdc:mga0rr50_700540_c1 3300050513 Bacteria 864
173 nmdc:mga08x19_133419_c1 3300050514 Unclassified 1672
174 nmdc:mga08x19_14469_c1 3300050514 Bacteria 4785
175 nmdc:mga08x19_33323_c1 3300050514 Unclassified 3251
176 nmdc:mga0a205_13881_c1 3300050515 Bacteria 7510
177 nmdc:mga0a205_185404_c3 3300050515 Unclassified 1151
178 nmdc:mga0a205_7523_c1 3300050515 Bacteria 9867
179 Ga0500635_0007637 3300053080 Bacteria 2939
180 Ga0495655_0130246 3300053083 Bacteria 774
181 Ga0500608_026790 3300053122 Bacteria 2711
182 Ga0500652_025047 3300053131 Bacteria 2282
183 Ga0500568_0075168 3300053139 Bacteria 1288
184 Ga0501084_0736130 3300054114 Unclassified 831
185 Ga0587073_0207506 3300059492 Bacteria 591
186 Ga0587090_027356 3300059510 Bacteria 933
187 Ga0587109_010246 3300059624 Bacteria 1492
188 Ga0587115_003290 3300059626 Bacteria 1689
189 Ga0587108_002415 3300059653 Bacteria 1250
190 Ga0587124_020064 3300059660 Bacteria 677
191 Ga0587111_0032978 3300060346 Bacteria 1068
192 Ga0466962_0447534 3300061719 Bacteria 650
193 2644339070 2643221660 Bacteria 4208257
194 2691329510 2690315857 Bacteria 4396207
195 2738715731 2738541276 Bacteria 4690596
196 2870071384 2870068957 Bacteria 8925310
197 2919536208 2919534386 Bacteria 4577686
198 2929927651 2929921140 Bacteria 8649150
199 8003151497 8003151029 Bacteria 8187759
200 8020949311 8020945358 Bacteria 8467355
201 8054915670 8054913762 Bacteria 7713009
202 Ga0587124_006928
203 JGI24740J21852_10000256
204 JGI24739J22299_10026706
205 JGI25154J39366_1000020
206 JGI25157J39369_1002636
207 JGI25406J46586_10007651
208 JGI25153J46596_10010165
209 rootL2_10356633
210 Ga0065165_1017918
211 Ga0065704_10409380
212 Ga0065707_10017080
213 Ga0065707_10418328
214 Ga0065707_10657780
215 Ga0070690_100043803
216 Ga0070689_100151143
217 Ga0070703_10015211
218 Ga0070703_10269824
219 Ga0070713_101723575
220 Ga0070711_100513582
221 Ga0070705_100006346
222 Ga0070694_100008206
223 Ga0070708_100759877
224 Ga0070706_100058209
225 Ga0070706_100088899
226 Ga0070706_101367757
227 Ga0070707_100015747
228 Ga0070707_100388955
229 Ga0070698_100003434
230 Ga0070698_100463927
231 Ga0070699_100065702
232 Ga0070699_100082452
233 Ga0070699_101185711
234 Ga0070697_100090734
235 Ga0070697_100099469
236 Ga0070697_101078881
237 Ga0070686_101530161
238 Ga0070695_100003808
239 Ga0070696_100098516
240 Ga0070693_100197843
241 Ga0070665_100462833
242 Ga0070704_100191407
243 Ga0070704_100250656
244 Ga0081539_10000643
245 Ga0070717_10491202
246 Ga0075365_10017295
247 Ga0070716_100671375
248 Ga0097621_101076737
249 Ga0075433_10001422
250 Ga0075433_10040734
251 Ga0075433_10867270
252 Ga0075434_100003187
253 Ga0075434_100104149
254 Ga0075434_100143026
255 Ga0075429_100085955
256 Ga0075436_100083619
257 Ga0075436_100157700
258 Ga0075436_100748750
259 Ga0075435_100111903
260 Ga0075435_100314170
261 Ga0075435_100790952
262 Ga0099794_10060480
263 Ga0099794_10198219
264 Ga0114129_10048753
265 Ga0157370_10272077
266 Ga0163163_10079942
267 Ga0183365_10001
268 Ga0209646_1000005
269 Ga0209026_1000198
270 Ga0209129_1021636
271 Ga0209233_1016295
272 Ga0209758_1004788
273 Ga0207426_1022455
274 Ga0207653_10027270
275 Ga0207684_10004599
276 Ga0207646_10001414
277 Ga0207646_10569557
278 Ga0207700_10882408
279 Ga0207665_10527412
280 Ga0207641_12124276
281 Ga0268266_10799066
282 Ga0265318_10000670
283 Ga0265338_10137819
284 Ga0265330_10103203
285 Ga0265332_10182565
286 Ga0265320_10111937
287 Ga0265325_10000244
288 Ga0265339_10081776
289 Ga0265331_10045503
290 Ga0265316_10001938
291 Ga0265316_10035977
292 Ga0307408_100021372
293 Ga0265313_10003729
294 Ga0265313_10039030
295 Ga0316579_10324078
296 Ga0265314_10016441
297 Ga0307405_10189600
298 Ga0307413_10000175
299 Ga0307413_10134403
300 Ga0307413_10288823
301 Ga0307413_10562591
302 Ga0307413_10849404
303 Ga0307410_10027203
304 Ga0307410_10068075
305 Ga0307410_10127350
306 Ga0307410_10343475
307 Ga0307406_10011715
308 Ga0307406_10061047
309 Ga0307406_10066186
310 Ga0307407_10012155
311 Ga0307407_11495561
312 Ga0307412_10086799
313 Ga0307409_100007907
314 Ga0307409_100009915
315 Ga0307409_100020860
316 Ga0307409_100728391
317 Ga0307409_101109951
318 Ga0307416_100854900
319 Ga0307416_102388916
320 Ga0307414_10011600
321 Ga0307414_10135542
322 Ga0307411_10000968
323 Ga0307411_10194999
324 Ga0307415_100025123
325 Ga0307415_100040891
326 Ga0307415_100042642
327 Ga0307415_100170242
328 Ga0373954_0272439
329 Ga0316582_0330534
330 Ga0400491_15056
331 Ga0436360_0404794
332 Ga0436361_0794919
333 Ga0450891_004410
334 Ga0466966_0151267
335 Ga0466961_0511881
336 Ga0466963_0048832
337 Ga0466963_0079198
338 Ga0466963_0163513
339 Ga0466963_0210381
340 Ga0453684_0402723
341 Ga0466957_0144091
342 Ga0466960_0008818
343 Ga0451576_0002025
344 Ga0451576_0164969
345 Ga0451576_1849563
346 Ga0466958_0340607
347 Ga0466958_1181559
348 Ga0466967_0080732
349 Ga0466967_0190505
350 Ga0466967_0301098
351 Ga0496103_0689216
352 Ga0496114_0123647
353 Ga0496115_0028005
354 Ga0501034_0099951
355 Ga0501034_0201117
356 Ga0501070_0058435
357 Ga0501075_0125788
358 Ga0501076_0358041
359 Ga0501202_163758
360 Ga0501216_168634
361 Ga0501083_0001287
362 Ga0501268_123440
363 Ga0501280_002822
364 nmdc:mga03683_239247_c1
365 nmdc:mga00v17_405605_c1
366 nmdc:mga0yw44_12634_c1
367 nmdc:mga05p37_1010025_c1
368 nmdc:mga05p37_23361_c1
369 nmdc:mga06r32_61494_c1
370 nmdc:mga0n895_1248285_c1
371 nmdc:mga0n895_29498_c1
372 nmdc:mga0rr50_441981_c1
373 nmdc:mga0rr50_700540_c1
374 nmdc:mga08x19_133419_c1
375 nmdc:mga08x19_14469_c1
376 nmdc:mga08x19_33323_c1
377 nmdc:mga0a205_13881_c1
378 nmdc:mga0a205_185404_c3
379 nmdc:mga0a205_7523_c1
380 Ga0500635_0007637
381 Ga0495655_0130246
382 Ga0500608_026790
383 Ga0500652_025047
384 Ga0500568_0075168
385 Ga0501084_0736130
386 Ga0587073_0207506
387 Ga0587090_027356
388 Ga0587109_010246
389 Ga0587115_003290
390 Ga0587108_002415
391 Ga0587124_020064
392 Ga0587111_0032978
393 Ga0466962_0447534
394 2644339070
395 2691329510
396 2738715731
397 2870071384
398 2919536208
399 2929927651
400 8003151497
401 8020949311
402 8054915670

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

35

156

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h1g-assembly1.cif.gz_A crystal structure of chey mutant t84a of helicobacter pylori 0.9426 7 128
3h1e-assembly1.cif.gz_A crystal structure of mg(2+) and beh(3)(-)-bound chey of helicobacter pylori 0.9399 7 128
3h1f-assembly1.cif.gz_A crystal structure of chey mutant d53a of helicobacter pylori 0.9397 7 128
6xvu-assembly2.cif.gz_C bacteriophytochrome response regulator from deinococcus radiodurans 0.9393 5 134
1k66-assembly1.cif.gz_B crystal structure of the cyanobacterial phytochrome response regulator, rcpb 0.9328 5 127
ID Description Score Start End Superfamily
3h1eA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9399 7 128 3.40.50.2300
1k66B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9328 5 127 3.40.50.2300
4zylA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9295 7 128 3.40.50.2300
1jlkA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9294 5 129 3.40.50.2300
4jp1A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.919 7 120 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A1W6E234-F1-model_v4 deleted 0.9915 7 129
AF-A0A6M5Y7W0-F1-model_v4 Response regulator 0.9882 7 132 GO:0000160
AF-A0A5R9KN31-F1-model_v4 Response regulator 0.9874 6 128 GO:0000160
AF-A0A372F0Z6-F1-model_v4 Response regulator 0.9843 5 131 GO:0000160
AF-K6XU02-F1-model_v4 Response regulator rcp1 0.9833 8 129 GO:0000160

Map