F308871

General Info

Members Datasets Scaffolds Average Seq Length
201 140 402 297

Family's Representative Sequence

Representative Sequence 3300044765|Ga0466970_0016251|Ga0466970_0016251_303_1265
Length 320
Sequence VSDTVSAETPVDRPVEGRAVDGPLDLPVALPPDRTVVDGVDVLGSLSPSRAGDFMACPMLFRFRTVDRLPEPSSPLAVRGTVVHKALEDLFDLPAADRTPDRAAELLVPAWEDILAASPEVAEMFGGDGPEVGPWLASCQESLARYFALEDPTRIEPAERELYVETLLDSKLLLRGFVDRLDVAPTGEIRVVDYKTGKAPPEAFEAKALFQMKFYALVIWRTRGVVPAMLQLIYLGSGEVLRYRPDEHDLLATERKLEALWAAILRAQESGDWRPSPGPICDWCAHREICPAWGGTPPPLPQPEPPVVELTDGLSAEDVD

Samples

Sample ID Description Type Environment
1 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
60 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
61 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
62 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
65 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
71 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
72 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
73 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
74 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
75 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
79 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
80 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
81 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
82 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
83 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
87 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
88 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
89 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
105 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
108 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
109 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
110 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
111 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
126 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
127 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
130 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
131 2643221561 Nocardioides sp. Root151 Isolate Unclassified
132 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
133 2643221696 Nocardioides sp. Root140 Isolate Unclassified
134 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
135 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
136 2739367898 Nocardioides sp. CF479 Isolate Unclassified
137 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
138 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
139 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
140 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.02
Metatranscriptomes 0
Isolates 4.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.99
Nodule 0
Rhizoplane 14.93
Rhizosphere 73.13
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466970_0016251 3300044765 Bacteria 3835
2 LJQas_1000550 3300000549 Bacteria 6131
3 Ga0070658_10045337 3300005327 Bacteria 3555
4 Ga0070683_100015801 3300005329 Bacteria 6637
5 Ga0070683_100019913 3300005329 Bacteria 5965
6 Ga0070683_100043501 3300005329 Bacteria 4139
7 Ga0070680_100388439 3300005336 Bacteria 1189
8 Ga0070682_100173361 3300005337 Bacteria 1501
9 Ga0070660_100110124 3300005339 Bacteria 2190
10 Ga0070659_100024755 3300005366 Bacteria 4604
11 Ga0070679_100003996 3300005530 Bacteria 13583
12 Ga0070684_100000973 3300005535 Bacteria 20441
13 Ga0070693_100065400 3300005547 Bacteria 2125
14 Ga0068857_100021074 3300005577 Bacteria 5735
15 Ga0068866_10085143 3300005718 Bacteria 1708
16 Ga0068861_100072428 3300005719 Bacteria 2673
17 Ga0068860_100334875 3300005843 Bacteria 1487
18 Ga0081455_10001262 3300005937 Bacteria 31608
19 Ga0081455_10021519 3300005937 Bacteria 6049
20 Ga0081538_10000016 3300005981 Bacteria 147022
21 Ga0075365_10011797 3300006038 Bacteria 5157
22 Ga0075364_10006292 3300006051 Bacteria 6969
23 Ga0075428_100008236 3300006844 Bacteria 11559
24 Ga0075430_100126396 3300006846 Bacteria 2131
25 Ga0075431_100027970 3300006847 Bacteria 5787
26 Ga0075431_100057892 3300006847 Bacteria 3997
27 Ga0075429_100002285 3300006880 Bacteria 16083
28 Ga0111539_10060518 3300009094 Bacteria 4488
29 Ga0105245_10012252 3300009098 Bacteria 7461
30 Ga0105245_10273328 3300009098 Bacteria 1649
31 Ga0114129_10071898 3300009147 Bacteria 4823
32 Ga0105242_10094534 3300009176 Bacteria 2522
33 Ga0105248_10064519 3300009177 Bacteria 4111
34 Ga0105249_10684636 3300009553 Bacteria 1085
35 Ga0157374_10189504 3300013296 Bacteria 2011
36 Ga0157372_10000898 3300013307 Bacteria 32294
37 Ga0157372_10274272 3300013307 Bacteria 1960
38 Ga0157375_10020010 3300013308 Bacteria 6104
39 Ga0163163_10421145 3300014325 Bacteria 1394
40 Ga0157379_10021901 3300014968 Bacteria 5663
41 Ga0157376_10504289 3300014969 Bacteria 1190
42 Ga0163161_10249998 3300017792 Bacteria 1382
43 Ga0213876_10086823 3300021384 Bacteria 1656
44 Ga0207642_10170401 3300025899 Bacteria 1177
45 Ga0207688_10054786 3300025901 Bacteria 2238
46 Ga0207688_10059894 3300025901 Bacteria 2144
47 Ga0207647_10015639 3300025904 Bacteria 5195
48 Ga0207657_10039403 3300025919 Bacteria 4200
49 Ga0207657_10233688 3300025919 Bacteria 1470
50 Ga0207652_10338710 3300025921 Bacteria 1358
51 Ga0207694_10365877 3300025924 Bacteria 1195
52 Ga0207687_10010052 3300025927 Bacteria 6190
53 Ga0207687_10226931 3300025927 Bacteria 1473
54 Ga0207704_10104112 3300025938 Bacteria 1900
55 Ga0207711_10158030 3300025941 Bacteria 2050
56 Ga0207661_10018980 3300025944 Bacteria 5117
57 Ga0207667_10191475 3300025949 Bacteria 2099
58 Ga0207703_10198356 3300026035 Bacteria 1782
59 Ga0207678_10339818 3300026067 Bacteria 1293
60 Ga0207708_10210935 3300026075 Bacteria 1552
61 Ga0207674_10026358 3300026116 Bacteria 6175
62 Ga0207675_100220692 3300026118 Bacteria 1826
63 Ga0207698_10256861 3300026142 Bacteria 1603
64 Ga0268266_10036867 3300028379 Bacteria 4165
65 Ga0268264_10023716 3300028381 Bacteria 5004
66 Ga0316182_1030028 3300030745 Bacteria 1223
67 Ga0307408_100414156 3300031548 Bacteria 1160
68 Ga0307508_10018034 3300031616 Bacteria 6415
69 Ga0307508_10169345 3300031616 Bacteria 1788
70 Ga0307405_10035306 3300031731 Bacteria 2985
71 Ga0307407_10011210 3300031903 Bacteria 4256
72 Ga0307407_10054405 3300031903 Bacteria 2308
73 Ga0307407_10082287 3300031903 Bacteria 1950
74 Ga0307409_100011857 3300031995 Bacteria 5521
75 Ga0307409_100055168 3300031995 Bacteria 3066
76 Ga0307409_100097225 3300031995 Bacteria 2431
77 Ga0307416_100030604 3300032002 Bacteria 4041
78 Ga0307416_100040696 3300032002 Bacteria 3613
79 Ga0307416_100084171 3300032002 Bacteria 2702
80 Ga0307414_10212257 3300032004 Bacteria 1583
81 Ga0307415_100000161 3300032126 Bacteria 29635
82 Ga0307415_100032492 3300032126 Bacteria 3375
83 Ga0395905_0061748 3300037471 Bacteria 3505
84 Ga0436364_0042514 3300037853 Bacteria 4635
85 Ga0395901_0039519 3300038443 Bacteria 4882
86 Ga0436365_1221669 3300039437 Bacteria 1720
87 Ga0439465_0016411 3300041413 Bacteria 2310
88 Ga0451793_0466078 3300041452 Bacteria 3172
89 Ga0451793_1003747 3300041452 Bacteria 916
90 Ga0451837_0877005 3300041494 Bacteria 1209
91 Ga0466965_0074930 3300044683 Bacteria 1706
92 Ga0466970_0008680 3300044765 Bacteria 5120
93 Ga0466970_0033584 3300044765 Bacteria 2711
94 Ga0466957_0012110 3300044842 Bacteria 4989
95 Ga0466957_0071944 3300044842 Bacteria 2140
96 Ga0466960_0002744 3300044901 Bacteria 6661
97 Ga0466960_0017789 3300044901 Bacteria 3106
98 Ga0466960_0108781 3300044901 Bacteria 1437
99 Ga0451576_0207286 3300045051 Bacteria 2047
100 Ga0466967_0004369 3300045976 Bacteria 9517
101 Ga0466967_0060628 3300045976 Bacteria 3353
102 Ga0466967_0098677 3300045976 Bacteria 2667
103 Ga0466967_0186625 3300045976 Bacteria 1958
104 Ga0466967_0216813 3300045976 Bacteria 1817
105 Ga0466967_0307397 3300045976 Bacteria 1526
106 Ga0466967_0374071 3300045976 Bacteria 1382
107 Ga0495603_0047084 3300046455 Bacteria 2569
108 Ga0495629_0061125 3300046459 Bacteria 2632
109 Ga0496100_0313799 3300048903 Bacteria 1176
110 Ga0496100_0340268 3300048903 Bacteria 1131
111 Ga0496101_0112272 3300048904 Bacteria 2053
112 Ga0496102_0017589 3300048905 Bacteria 6264
113 Ga0496102_0030030 3300048905 Bacteria 4864
114 Ga0496102_0052477 3300048905 Bacteria 3715
115 Ga0496103_0023104 3300048906 Bacteria 3749
116 Ga0496103_0033712 3300048906 Bacteria 3129
117 Ga0496104_0002352 3300048907 Bacteria 16338
118 Ga0496104_0140129 3300048907 Bacteria 2323
119 Ga0496104_0594118 3300048907 Bacteria 1017
120 Ga0496105_0052432 3300048908 Bacteria 3370
121 Ga0496106_0130117 3300048909 Bacteria 1973
122 Ga0496108_0014396 3300048911 Bacteria 6458
123 Ga0496108_0149387 3300048911 Bacteria 2016
124 Ga0496108_0302708 3300048911 Bacteria 1393
125 Ga0496109_0106926 3300048912 Bacteria 2598
126 Ga0496109_0145186 3300048912 Bacteria 2220
127 Ga0496109_0173103 3300048912 Bacteria 2026
128 Ga0496109_0202419 3300048912 Bacteria 1867
129 Ga0496110_0006800 3300048913 Bacteria 9096
130 Ga0496110_0056452 3300048913 Bacteria 3456
131 Ga0496110_0338514 3300048913 Bacteria 1371
132 Ga0496112_0161472 3300048915 Bacteria 2208
133 Ga0496112_0317401 3300048915 Bacteria 1503
134 Ga0496114_0002004 3300048917 Bacteria 15480
135 Ga0496114_0043923 3300048917 Bacteria 3706
136 Ga0496115_0097689 3300048918 Bacteria 2405
137 Ga0496123_0015601 3300048926 Bacteria 6220
138 Ga0496124_0064436 3300048927 Bacteria 3059
139 Ga0501031_0116171 3300049568 Bacteria 1748
140 Ga0501034_0250810 3300049571 Bacteria 1714
141 Ga0501036_0083133 3300049572 Bacteria 2706
142 Ga0501037_0411293 3300049573 Bacteria 927
143 Ga0501038_0104753 3300049574 Bacteria 2351
144 Ga0501039_0046439 3300049575 Bacteria 3355
145 Ga0501040_0063374 3300049576 Bacteria 2544
146 Ga0501048_0081750 3300049582 Bacteria 2279
147 Ga0501067_0000825 3300049583 Bacteria 16736
148 Ga0501067_0003041 3300049583 Bacteria 9259
149 Ga0501067_0015671 3300049583 Bacteria 4195
150 Ga0501068_0025178 3300049584 Bacteria 3499
151 Ga0501068_0138132 3300049584 Bacteria 1527
152 Ga0501069_0010022 3300049585 Bacteria 5010
153 Ga0501070_0012710 3300049586 Bacteria 7100
154 Ga0501070_0015153 3300049586 Bacteria 6488
155 Ga0501070_0588250 3300049586 Bacteria 888
156 Ga0501071_0006228 3300049587 Bacteria 7741
157 Ga0501071_0141444 3300049587 Bacteria 1792
158 Ga0501072_0036022 3300049588 Bacteria 3878
159 Ga0501072_0038473 3300049588 Bacteria 3754
160 Ga0501073_0002298 3300049589 Bacteria 14297
161 Ga0501073_0007346 3300049589 Bacteria 8198
162 Ga0501074_0004246 3300049590 Bacteria 10229
163 Ga0501074_0006336 3300049590 Bacteria 8546
164 Ga0501074_0009041 3300049590 Bacteria 7234
165 Ga0501077_0021752 3300049593 Bacteria 4060
166 Ga0501079_0005255 3300049741 Bacteria 9628
167 Ga0501079_0026476 3300049741 Bacteria 4446
168 Ga0501079_0075978 3300049741 Bacteria 2598
169 Ga0501080_0003955 3300049742 Bacteria 13120
170 Ga0501080_0012179 3300049742 Bacteria 7879
171 Ga0501080_0227170 3300049742 Bacteria 1707
172 Ga0501083_0012604 3300049744 Bacteria 5914
173 Ga0501044_0502117 3300049823 Bacteria 1114
174 Ga0501045_0196077 3300049824 Bacteria 1505
175 nmdc:mga00v17_1426_c1 3300050491 Bacteria 6984
176 nmdc:mga0yw44_14551_c1 3300050492 Bacteria 4182
177 nmdc:mga0yw44_3369_c1 3300050492 Bacteria 7088
178 nmdc:mga07m45_100027_c1 3300050496 Bacteria 1665
179 nmdc:mga05p37_381_c1 3300050507 Bacteria 47835
180 nmdc:mga09592_862_c1 3300050508 Bacteria 23697
181 nmdc:mga0qj67_7234_c1 3300050509 Bacteria 8199
182 nmdc:mga06r32_129_c1 3300050510 Bacteria 55137
183 nmdc:mga06r32_50754_c1 3300050510 Bacteria 3968
184 nmdc:mga08y16_20910_c1 3300050511 Bacteria 6910
185 nmdc:mga0n895_474341_c1 3300050512 Bacteria 1262
186 Ga0495601_0207932 3300053077 Bacteria 1279
187 Ga0495619_0107620 3300053085 Bacteria 1902
188 Ga0501084_0023891 3300054114 Bacteria 5099
189 Ga0501084_0057435 3300054114 Bacteria 3256
190 Ga0501082_0016030 3300060353 Bacteria 6446
191 Ga0530510_0134183 3300061734 Bacteria 1822
192 2643826171 2643221561 Bacteria 4984412
193 2644457041 2643221681 Bacteria 3707866
194 2644532146 2643221696 Bacteria 5431823
195 2645719608 2643221961 Bacteria 3919167
196 2645726504 2643221962 Bacteria 3874254
197 2740168943 2739367898 Bacteria 4367674
198 2809196152 2808606439 Bacteria 5952208
199 2812351724 2811994878 Bacteria 5992952
200 2855387225 2855386786 Bacteria 4752232
201 2891970647 2891968417 Bacteria 5821697
202 Ga0466970_0016251
203 LJQas_1000550
204 Ga0070658_10045337
205 Ga0070683_100015801
206 Ga0070683_100019913
207 Ga0070683_100043501
208 Ga0070680_100388439
209 Ga0070682_100173361
210 Ga0070660_100110124
211 Ga0070659_100024755
212 Ga0070679_100003996
213 Ga0070684_100000973
214 Ga0070693_100065400
215 Ga0068857_100021074
216 Ga0068866_10085143
217 Ga0068861_100072428
218 Ga0068860_100334875
219 Ga0081455_10001262
220 Ga0081455_10021519
221 Ga0081538_10000016
222 Ga0075365_10011797
223 Ga0075364_10006292
224 Ga0075428_100008236
225 Ga0075430_100126396
226 Ga0075431_100027970
227 Ga0075431_100057892
228 Ga0075429_100002285
229 Ga0111539_10060518
230 Ga0105245_10012252
231 Ga0105245_10273328
232 Ga0114129_10071898
233 Ga0105242_10094534
234 Ga0105248_10064519
235 Ga0105249_10684636
236 Ga0157374_10189504
237 Ga0157372_10000898
238 Ga0157372_10274272
239 Ga0157375_10020010
240 Ga0163163_10421145
241 Ga0157379_10021901
242 Ga0157376_10504289
243 Ga0163161_10249998
244 Ga0213876_10086823
245 Ga0207642_10170401
246 Ga0207688_10054786
247 Ga0207688_10059894
248 Ga0207647_10015639
249 Ga0207657_10039403
250 Ga0207657_10233688
251 Ga0207652_10338710
252 Ga0207694_10365877
253 Ga0207687_10010052
254 Ga0207687_10226931
255 Ga0207704_10104112
256 Ga0207711_10158030
257 Ga0207661_10018980
258 Ga0207667_10191475
259 Ga0207703_10198356
260 Ga0207678_10339818
261 Ga0207708_10210935
262 Ga0207674_10026358
263 Ga0207675_100220692
264 Ga0207698_10256861
265 Ga0268266_10036867
266 Ga0268264_10023716
267 Ga0316182_1030028
268 Ga0307408_100414156
269 Ga0307508_10018034
270 Ga0307508_10169345
271 Ga0307405_10035306
272 Ga0307407_10011210
273 Ga0307407_10054405
274 Ga0307407_10082287
275 Ga0307409_100011857
276 Ga0307409_100055168
277 Ga0307409_100097225
278 Ga0307416_100030604
279 Ga0307416_100040696
280 Ga0307416_100084171
281 Ga0307414_10212257
282 Ga0307415_100000161
283 Ga0307415_100032492
284 Ga0395905_0061748
285 Ga0436364_0042514
286 Ga0395901_0039519
287 Ga0436365_1221669
288 Ga0439465_0016411
289 Ga0451793_0466078
290 Ga0451793_1003747
291 Ga0451837_0877005
292 Ga0466965_0074930
293 Ga0466970_0008680
294 Ga0466970_0033584
295 Ga0466957_0012110
296 Ga0466957_0071944
297 Ga0466960_0002744
298 Ga0466960_0017789
299 Ga0466960_0108781
300 Ga0451576_0207286
301 Ga0466967_0004369
302 Ga0466967_0060628
303 Ga0466967_0098677
304 Ga0466967_0186625
305 Ga0466967_0216813
306 Ga0466967_0307397
307 Ga0466967_0374071
308 Ga0495603_0047084
309 Ga0495629_0061125
310 Ga0496100_0313799
311 Ga0496100_0340268
312 Ga0496101_0112272
313 Ga0496102_0017589
314 Ga0496102_0030030
315 Ga0496102_0052477
316 Ga0496103_0023104
317 Ga0496103_0033712
318 Ga0496104_0002352
319 Ga0496104_0140129
320 Ga0496104_0594118
321 Ga0496105_0052432
322 Ga0496106_0130117
323 Ga0496108_0014396
324 Ga0496108_0149387
325 Ga0496108_0302708
326 Ga0496109_0106926
327 Ga0496109_0145186
328 Ga0496109_0173103
329 Ga0496109_0202419
330 Ga0496110_0006800
331 Ga0496110_0056452
332 Ga0496110_0338514
333 Ga0496112_0161472
334 Ga0496112_0317401
335 Ga0496114_0002004
336 Ga0496114_0043923
337 Ga0496115_0097689
338 Ga0496123_0015601
339 Ga0496124_0064436
340 Ga0501031_0116171
341 Ga0501034_0250810
342 Ga0501036_0083133
343 Ga0501037_0411293
344 Ga0501038_0104753
345 Ga0501039_0046439
346 Ga0501040_0063374
347 Ga0501048_0081750
348 Ga0501067_0000825
349 Ga0501067_0003041
350 Ga0501067_0015671
351 Ga0501068_0025178
352 Ga0501068_0138132
353 Ga0501069_0010022
354 Ga0501070_0012710
355 Ga0501070_0015153
356 Ga0501070_0588250
357 Ga0501071_0006228
358 Ga0501071_0141444
359 Ga0501072_0036022
360 Ga0501072_0038473
361 Ga0501073_0002298
362 Ga0501073_0007346
363 Ga0501074_0004246
364 Ga0501074_0006336
365 Ga0501074_0009041
366 Ga0501077_0021752
367 Ga0501079_0005255
368 Ga0501079_0026476
369 Ga0501079_0075978
370 Ga0501080_0003955
371 Ga0501080_0012179
372 Ga0501080_0227170
373 Ga0501083_0012604
374 Ga0501044_0502117
375 Ga0501045_0196077
376 nmdc:mga00v17_1426_c1
377 nmdc:mga0yw44_14551_c1
378 nmdc:mga0yw44_3369_c1
379 nmdc:mga07m45_100027_c1
380 nmdc:mga05p37_381_c1
381 nmdc:mga09592_862_c1
382 nmdc:mga0qj67_7234_c1
383 nmdc:mga06r32_129_c1
384 nmdc:mga06r32_50754_c1
385 nmdc:mga08y16_20910_c1
386 nmdc:mga0n895_474341_c1
387 Ga0495601_0207932
388 Ga0495619_0107620
389 Ga0501084_0023891
390 Ga0501084_0057435
391 Ga0501082_0016030
392 Ga0530510_0134183
393 2643826171
394 2644457041
395 2644532146
396 2645719608
397 2645726504
398 2740168943
399 2809196152
400 2812351724
401 2855387225
402 2891970647

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12705

PDDEXK_1

PD-(D/E)XK nuclease superfamily

45

291

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
7sjr-assembly1.cif.gz_A cryo-em structure of adna-adnb(w325a) in complex with dna and amppnp 0.7864 24 276
6ppr-assembly1.cif.gz_A cryo-em structure of adna(d934a)-adnb(d1014a) in complex with amppnp and dna 0.7634 24 276
6ppu-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.7477 24 276
8d3l-assembly1.cif.gz_I type i-c cas4-cas1-cas2 complex bound to a pam/pam prespacer 0.7079 24 274
6ppj-assembly1.cif.gz_A cryo-em structure of adna(d934a)-adnb(d1014a) in complex with amppnp 0.7 24 276
ID Description Score Start End Superfamily
af_O33254_93_261_2.50.20.10 Mainly Beta;Clam;outer membrane lipoprotein receptor (LolB), chain A;Lipoprotein localisation LolA/LolB/LppX 0.941 117 275 2.50.20.10
af_O33254_93_261_2.50.20.10 Mainly Beta;Clam;outer membrane lipoprotein receptor (LolB), chain A;Lipoprotein localisation LolA/LolB/LppX 0.8827 117 275 2.50.20.10
af_P9WQ59_462_579_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.772 164 218 3.30.300.30
af_Q2G1G2_65_238_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.7499 143 231 3.90.1570.50
af_Q9U3F2_271_431_3.90.320.10 Alpha Beta;Alpha-Beta Complex;Lambda Exonuclease; Chain A; 0.7382 139 274 3.90.320.10
ID Description Score Start End GO Terms
AF-A0A7V9J9H6-F1-model_v4 PD-(D/E)XK nuclease family protein 0.9934 24 248
AF-A0A838FR93-F1-model_v4 PD-(D/E)XK nuclease family protein 0.9926 21 283
AF-A0A7V9U9K8-F1-model_v4 PD-(D/E)XK nuclease family protein 0.9921 24 286
AF-A0A7Y9UM89-F1-model_v4 Putative RecB family exonuclease 0.9906 7 288 GO:0004527
AF-A0A522BYY9-F1-model_v4 Recombinase RecB 0.9843 21 287

Map