F304790

General Info

Members Datasets Scaffolds Average Seq Length
198 152 396 309

Family's Representative Sequence

Representative Sequence 3300044656|Ga0466969_0048439|Ga0466969_0048439_700_1833
Length 365
Sequence MDGRVTPGHDEGETFARNDGEQALDASGSAVVKWRSIARSCYDLAPRRIRKERQMKTPILAVAATLLAGQVPANAVESISTTTSYHRANIDGVNIFYREAGPKDAPTIVLLHGFPSSSREFDTLLPLLATRYHLIAPDFPGFGQSEAPQPSAYTYTFDHLAETTDHLLTQLNIDKCAFFLHDYGGPIGFRILLAHPERAKALIVSNANAYQEGLGPKWATIAKYWSDRAAHPEVFEAFVSRAATEQRHTLGTSHPERYNPDSWTDEYAFLSRPGQREIQAELLYDYRTNVAAYPNWQAWLRDHKPPTLVVWGKNDPSFIGPGGEAYKRDVPDAEVHLLDAGHFVLDEKNDEIATLILQFLSRHGY

Samples

Sample ID Description Type Environment
1 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
7 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
8 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
21 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
24 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
36 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
37 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
42 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
61 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
62 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
63 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
64 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
65 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
68 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
69 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
70 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
71 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
72 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
78 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
79 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
80 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
83 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
84 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
85 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
88 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
91 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
94 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
95 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
96 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
97 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
98 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
99 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
100 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
101 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
106 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
107 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
108 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
109 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
110 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
111 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
112 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
113 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
114 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
115 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
116 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
117 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
118 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
119 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
120 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
121 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
122 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
123 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
124 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
125 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
126 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
127 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
128 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
129 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
133 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
134 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
135 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
140 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
141 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
142 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
143 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
144 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
145 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
146 2738543009 Luteibacter sp. OK325 Isolate Unclassified
147 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
148 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
149 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
150 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
151 2919085039 Luteibacter sp. 1214 Isolate Unclassified
152 3005594810 Bradyrhizobium sp. CCBAU 53340 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.96
Metatranscriptomes 0
Isolates 4.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.59
Nodule 1.01
Rhizoplane 1.52
Rhizosphere 71.72
Stem 0
Stem Tuber 0
Unclassified 7.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466969_0048439 3300044656 Bacteria 2101
2 rootH1_10037340 3300003316 Bacteria 3322
3 rootH2_10214099 3300003320 Bacteria 2377
4 rootH2_10285549 3300003320 Bacteria 3463
5 rootL2_10313419 3300003322 Bacteria 1460
6 rootH1_10093537 3300003323 Bacteria 17827
7 rootH1_10201164 3300003323 Bacteria 5182
8 Ga0055533_1000276 3300003756 Bacteria 28108
9 Ga0055535_1000375 3300003761 Bacteria 42689
10 Ga0055542_1000215 3300003762 Bacteria 70610
11 Ga0055536_1033814 3300003781 Bacteria 1300
12 Ga0055536_1043645 3300003781 Bacteria 1040
13 Ga0065165_1000933 3300005262 Bacteria 37393
14 Ga0065707_10124214 3300005295 Bacteria 2049
15 Ga0070709_10129302 3300005434 Unclassified 1722
16 Ga0070710_10147949 3300005437 Unclassified 1446
17 Ga0070663_100142039 3300005455 Bacteria 1834
18 Ga0070663_100230825 3300005455 Bacteria 1457
19 Ga0070679_100038677 3300005530 Bacteria 4743
20 Ga0070665_100022712 3300005548 Bacteria 6315
21 Ga0068856_100000338 3300005614 Bacteria 51264
22 Ga0068858_100001741 3300005842 Bacteria 22223
23 Ga0068860_100104211 3300005843 Unclassified 2708
24 Ga0081540_1035587 3300005983 Bacteria 2668
25 Ga0099795_10021678 3300007788 Bacteria 2111
26 Ga0105240_10034854 3300009093 Bacteria 6489
27 Ga0105240_10349356 3300009093 Bacteria 1678
28 Ga0105247_10023184 3300009101 Bacteria 3739
29 Ga0105248_10000693 3300009177 Bacteria 38048
30 Ga0105238_10092151 3300009551 Bacteria 3018
31 Ga0105238_10221305 3300009551 Unclassified 1869
32 Ga0105249_10000158 3300009553 Bacteria 82194
33 Ga0099796_10077502 3300010159 Bacteria 1213
34 Ga0105239_10088927 3300010375 Unclassified 3406
35 Ga0157370_10001495 3300013104 Bacteria 28921
36 Ga0157369_10578023 3300013105 Unclassified 1160
37 Ga0163163_10087915 3300014325 Unclassified 3119
38 Ga0182008_10065291 3300014497 Bacteria 1791
39 Ga0157379_10016278 3300014968 Bacteria 6542
40 Ga0157379_10062665 3300014968 Unclassified 3325
41 Ga0182006_1000049 3300015261 Bacteria 184514
42 Ga0182005_1000019 3300015265 Bacteria 296232
43 Ga0163161_10047739 3300017792 Bacteria 3091
44 Ga0209674_100029 3300025226 Bacteria 466683
45 Ga0209672_102425 3300025228 Bacteria 4596
46 Ga0209258_100290 3300025242 Bacteria 82647
47 Ga0209148_1000262 3300025254 Bacteria 82647
48 Ga0209759_1000337 3300025256 Bacteria 61867
49 Ga0209676_1002571 3300025292 Bacteria 12533
50 Ga0209676_1014183 3300025292 Bacteria 3012
51 Ga0209025_1004950 3300025294 Bacteria 11174
52 Ga0209564_1009763 3300025295 Bacteria 4514
53 Ga0209257_1003504 3300025304 Bacteria 13364
54 Ga0207699_10078054 3300025906 Bacteria 2045
55 Ga0207654_10074519 3300025911 Unclassified 2026
56 Ga0207695_10052959 3300025913 Bacteria 4248
57 Ga0207671_10000812 3300025914 Bacteria 39489
58 Ga0207671_10086691 3300025914 Bacteria 2354
59 Ga0207649_10009671 3300025920 Bacteria 5279
60 Ga0207694_10090444 3300025924 Bacteria 2415
61 Ga0207694_10169093 3300025924 Bacteria 1769
62 Ga0207711_10005534 3300025941 Bacteria 10679
63 Ga0207661_10086622 3300025944 Bacteria 2600
64 Ga0207712_10000246 3300025961 Bacteria 52868
65 Ga0207703_10006796 3300026035 Bacteria 9118
66 Ga0207678_10045912 3300026067 Bacteria 3778
67 Ga0207678_10081730 3300026067 Bacteria 2766
68 Ga0207678_10116889 3300026067 Bacteria 2276
69 Ga0207702_10000052 3300026078 Bacteria 137784
70 Ga0268266_10009111 3300028379 Bacteria 8764
71 Ga0268264_10050608 3300028381 Unclassified 3460
72 Ga0265314_10003461 3300031711 Bacteria 15251
73 Ga0373923_0090277 3300035111 Bacteria 1339
74 Ga0373953_0007350 3300035117 Bacteria 3685
75 Ga0373954_0004812 3300035118 Bacteria 5819
76 Ga0373956_0021547 3300035119 Bacteria 2749
77 Ga0373957_0001441 3300035120 Bacteria 6438
78 Ga0373943_0076901 3300035170 Bacteria 1703
79 Ga0373924_0036356 3300035410 Bacteria 2001
80 Ga0373931_0272137 3300035691 Bacteria 1037
81 Ga0373935_0010750 3300035692 Bacteria 5499
82 Ga0373933_0042566 3300035724 Bacteria 2684
83 Ga0373947_0137370 3300035725 Bacteria 1565
84 Ga0373937_0085228 3300036401 Bacteria 2924
85 Ga0395898_0000045 3300037466 Bacteria 297127
86 Ga0395901_0386794 3300038443 Bacteria 1439
87 Ga0436360_0063804 3300039438 Bacteria 1757
88 Ga0436361_0219271 3300039447 Bacteria 5139
89 Ga0436363_0545052 3300039450 Bacteria 1920
90 Ga0451795_0666976 3300041456 Bacteria 2795
91 Ga0466966_0037272 3300044684 Bacteria 3136
92 Ga0466961_0020542 3300044693 Bacteria 4249
93 Ga0466961_0258772 3300044693 Bacteria 1067
94 Ga0466959_0005331 3300045049 Bacteria 8794
95 Ga0466959_0136532 3300045049 Bacteria 1735
96 Ga0466958_0004724 3300045836 Bacteria 7238
97 Ga0495617_000019 3300046452 Bacteria 247938
98 Ga0495592_0096614 3300046454 Bacteria 2111
99 Ga0495629_0015328 3300046459 Bacteria 5504
100 Ga0495629_0064277 3300046459 Bacteria 2562
101 Ga0495638_0071763 3300046460 Bacteria 2118
102 Ga0495651_0023825 3300046462 Bacteria 4759
103 Ga0495651_0050021 3300046462 Bacteria 3226
104 Ga0495653_0009404 3300046463 Bacteria 7998
105 Ga0495653_0054095 3300046463 Bacteria 3069
106 Ga0495653_0111827 3300046463 Bacteria 1961
107 Ga0495650_0032595 3300046471 Bacteria 2328
108 Ga0495662_0035094 3300046476 Bacteria 2420
109 Ga0495607_0000027 3300046501 Bacteria 155694
110 Ga0495606_0000091 3300046507 Bacteria 153354
111 Ga0495606_0009238 3300046507 Bacteria 8372
112 Ga0495606_0062169 3300046507 Bacteria 2384
113 Ga0495606_0161092 3300046507 Unclassified 1309
114 Ga0495608_0040847 3300046511 Bacteria 3106
115 Ga0495610_0020712 3300046512 Bacteria 3643
116 Ga0495616_0000001 3300046513 Bacteria 780061
117 Ga0495618_0141023 3300046514 Bacteria 1542
118 Ga0495618_0161464 3300046514 Bacteria 1428
119 Ga0495620_0001430 3300046515 Bacteria 14306
120 Ga0495620_0012071 3300046515 Bacteria 4481
121 Ga0495631_0000410 3300046518 Bacteria 29585
122 Ga0495632_0018963 3300046519 Bacteria 3756
123 Ga0495648_0003697 3300046524 Bacteria 13364
124 Ga0495652_0018484 3300046529 Bacteria 6213
125 Ga0495652_0129525 3300046529 Bacteria 1999
126 Ga0495640_0002616 3300046533 Bacteria 14471
127 Ga0495640_0102690 3300046533 Bacteria 1875
128 Ga0495587_0081525 3300046536 Bacteria 1875
129 Ga0495587_0198352 3300046536 Bacteria 1135
130 Ga0495667_0005984 3300046559 Bacteria 8228
131 Ga0495667_0116312 3300046559 Bacteria 1727
132 Ga0495668_0005180 3300046616 Bacteria 8953
133 Ga0495634_0015197 3300046642 Bacteria 5534
134 Ga0495634_0035888 3300046642 Bacteria 3393
135 Ga0495611_0000008 3300046648 Bacteria 218134
136 Ga0495625_0065716 3300046660 Bacteria 2556
137 Ga0495625_0150463 3300046660 Bacteria 1565
138 Ga0495635_0018087 3300046663 Bacteria 4922
139 Ga0495635_0044631 3300046663 Bacteria 3057
140 Ga0495657_0080339 3300046675 Bacteria 2110
141 Ga0495646_0011139 3300046680 Bacteria 5712
142 Ga0495658_0005813 3300046683 Bacteria 6055
143 Ga0495613_0095130 3300046689 Bacteria 2155
144 Ga0495600_0053658 3300046809 Bacteria 2632
145 Ga0495600_0229153 3300046809 Bacteria 1186
146 Ga0495660_0000009 3300046810 Bacteria 427395
147 Ga0495581_0013971 3300047315 Bacteria 4657
148 Ga0495604_0041924 3300047317 Bacteria 3588
149 Ga0495674_0009859 3300047319 Bacteria 9068
150 Ga0495680_0021371 3300047322 Bacteria 5419
151 Ga0495675_0008809 3300047444 Bacteria 6263
152 Ga0495673_0000001 3300047469 Bacteria 1630730
153 Ga0495673_0000030 3300047469 Bacteria 468915
154 Ga0495684_0011006 3300047471 Bacteria 6995
155 Ga0495686_0000077 3300047472 Bacteria 205924
156 Ga0495686_0014301 3300047472 Bacteria 5466
157 Ga0495593_0000615 3300047673 Bacteria 20374
158 Ga0495602_0222578 3300048088 Bacteria 1423
159 Ga0496102_0006952 3300048905 Bacteria 9655
160 Ga0496106_0001701 3300048909 Bacteria 16446
161 Ga0496116_0015261 3300048919 Bacteria 6079
162 Ga0496117_0000024 3300048920 Bacteria 418750
163 Ga0496117_0050171 3300048920 Bacteria 2961
164 Ga0496117_0160810 3300048920 Unclassified 1316
165 Ga0496118_0000014 3300048921 Bacteria 561628
166 Ga0496119_0118037 3300048922 Unclassified 1462
167 Ga0496120_0048320 3300048923 Bacteria 2449
168 Ga0496121_0000368 3300048924 Bacteria 92730
169 Ga0496121_0025943 3300048924 Bacteria 5543
170 Ga0496121_0036042 3300048924 Bacteria 4417
171 Ga0496121_0168897 3300048924 Bacteria 1591
172 Ga0496122_0000126 3300048925 Bacteria 178362
173 Ga0496122_0063417 3300048925 Bacteria 2697
174 Ga0496123_0000357 3300048926 Bacteria 85815
175 Ga0496124_0015952 3300048927 Bacteria 7170
176 Ga0496125_0001169 3300048928 Bacteria 39735
177 Ga0496126_0004626 3300048929 Bacteria 16302
178 Ga0496126_0029974 3300048929 Bacteria 5163
179 Ga0496126_0057117 3300048929 Unclassified 3525
180 Ga0496126_0096870 3300048929 Bacteria 2586
181 Ga0496126_0117424 3300048929 Bacteria 2311
182 Ga0495601_0036233 3300053077 Bacteria 3080
183 Ga0495601_0104551 3300053077 Bacteria 1830
184 Ga0495612_0026913 3300053078 Bacteria 2311
185 Ga0495612_0032045 3300053078 Bacteria 2122
186 Ga0495595_0033594 3300053084 Bacteria 2315
187 Ga0495619_0000561 3300053085 Bacteria 24566
188 Ga0495619_0000661 3300053085 Bacteria 22568
189 Ga0500633_0003531 3300053160 Bacteria 3430
190 Ga0500636_0006085 3300053177 Bacteria 6924
191 2524463923 2524023210 Bacteria 9029266
192 2739226292 2738543009 Bacteria 4944499
193 2819564557 2818991440 Bacteria 4774720
194 2884338875 2884338543 Bacteria 4610696
195 2885386875 2885383462 Bacteria 9473874
196 2904465202 2904463128 Bacteria 4775606
197 2919088602 2919085039 Bacteria 4532964
198 3005597765 3005594810 Bacteria 8716512
199 Ga0466969_0048439
200 rootH1_10037340
201 rootH2_10214099
202 rootH2_10285549
203 rootL2_10313419
204 rootH1_10093537
205 rootH1_10201164
206 Ga0055533_1000276
207 Ga0055535_1000375
208 Ga0055542_1000215
209 Ga0055536_1033814
210 Ga0055536_1043645
211 Ga0065165_1000933
212 Ga0065707_10124214
213 Ga0070709_10129302
214 Ga0070710_10147949
215 Ga0070663_100142039
216 Ga0070663_100230825
217 Ga0070679_100038677
218 Ga0070665_100022712
219 Ga0068856_100000338
220 Ga0068858_100001741
221 Ga0068860_100104211
222 Ga0081540_1035587
223 Ga0099795_10021678
224 Ga0105240_10034854
225 Ga0105240_10349356
226 Ga0105247_10023184
227 Ga0105248_10000693
228 Ga0105238_10092151
229 Ga0105238_10221305
230 Ga0105249_10000158
231 Ga0099796_10077502
232 Ga0105239_10088927
233 Ga0157370_10001495
234 Ga0157369_10578023
235 Ga0163163_10087915
236 Ga0182008_10065291
237 Ga0157379_10016278
238 Ga0157379_10062665
239 Ga0182006_1000049
240 Ga0182005_1000019
241 Ga0163161_10047739
242 Ga0209674_100029
243 Ga0209672_102425
244 Ga0209258_100290
245 Ga0209148_1000262
246 Ga0209759_1000337
247 Ga0209676_1002571
248 Ga0209676_1014183
249 Ga0209025_1004950
250 Ga0209564_1009763
251 Ga0209257_1003504
252 Ga0207699_10078054
253 Ga0207654_10074519
254 Ga0207695_10052959
255 Ga0207671_10000812
256 Ga0207671_10086691
257 Ga0207649_10009671
258 Ga0207694_10090444
259 Ga0207694_10169093
260 Ga0207711_10005534
261 Ga0207661_10086622
262 Ga0207712_10000246
263 Ga0207703_10006796
264 Ga0207678_10045912
265 Ga0207678_10081730
266 Ga0207678_10116889
267 Ga0207702_10000052
268 Ga0268266_10009111
269 Ga0268264_10050608
270 Ga0265314_10003461
271 Ga0373923_0090277
272 Ga0373953_0007350
273 Ga0373954_0004812
274 Ga0373956_0021547
275 Ga0373957_0001441
276 Ga0373943_0076901
277 Ga0373924_0036356
278 Ga0373931_0272137
279 Ga0373935_0010750
280 Ga0373933_0042566
281 Ga0373947_0137370
282 Ga0373937_0085228
283 Ga0395898_0000045
284 Ga0395901_0386794
285 Ga0436360_0063804
286 Ga0436361_0219271
287 Ga0436363_0545052
288 Ga0451795_0666976
289 Ga0466966_0037272
290 Ga0466961_0020542
291 Ga0466961_0258772
292 Ga0466959_0005331
293 Ga0466959_0136532
294 Ga0466958_0004724
295 Ga0495617_000019
296 Ga0495592_0096614
297 Ga0495629_0015328
298 Ga0495629_0064277
299 Ga0495638_0071763
300 Ga0495651_0023825
301 Ga0495651_0050021
302 Ga0495653_0009404
303 Ga0495653_0054095
304 Ga0495653_0111827
305 Ga0495650_0032595
306 Ga0495662_0035094
307 Ga0495607_0000027
308 Ga0495606_0000091
309 Ga0495606_0009238
310 Ga0495606_0062169
311 Ga0495606_0161092
312 Ga0495608_0040847
313 Ga0495610_0020712
314 Ga0495616_0000001
315 Ga0495618_0141023
316 Ga0495618_0161464
317 Ga0495620_0001430
318 Ga0495620_0012071
319 Ga0495631_0000410
320 Ga0495632_0018963
321 Ga0495648_0003697
322 Ga0495652_0018484
323 Ga0495652_0129525
324 Ga0495640_0002616
325 Ga0495640_0102690
326 Ga0495587_0081525
327 Ga0495587_0198352
328 Ga0495667_0005984
329 Ga0495667_0116312
330 Ga0495668_0005180
331 Ga0495634_0015197
332 Ga0495634_0035888
333 Ga0495611_0000008
334 Ga0495625_0065716
335 Ga0495625_0150463
336 Ga0495635_0018087
337 Ga0495635_0044631
338 Ga0495657_0080339
339 Ga0495646_0011139
340 Ga0495658_0005813
341 Ga0495613_0095130
342 Ga0495600_0053658
343 Ga0495600_0229153
344 Ga0495660_0000009
345 Ga0495581_0013971
346 Ga0495604_0041924
347 Ga0495674_0009859
348 Ga0495680_0021371
349 Ga0495675_0008809
350 Ga0495673_0000001
351 Ga0495673_0000030
352 Ga0495684_0011006
353 Ga0495686_0000077
354 Ga0495686_0014301
355 Ga0495593_0000615
356 Ga0495602_0222578
357 Ga0496102_0006952
358 Ga0496106_0001701
359 Ga0496116_0015261
360 Ga0496117_0000024
361 Ga0496117_0050171
362 Ga0496117_0160810
363 Ga0496118_0000014
364 Ga0496119_0118037
365 Ga0496120_0048320
366 Ga0496121_0000368
367 Ga0496121_0025943
368 Ga0496121_0036042
369 Ga0496121_0168897
370 Ga0496122_0000126
371 Ga0496122_0063417
372 Ga0496123_0000357
373 Ga0496124_0015952
374 Ga0496125_0001169
375 Ga0496126_0004626
376 Ga0496126_0029974
377 Ga0496126_0057117
378 Ga0496126_0096870
379 Ga0496126_0117424
380 Ga0495601_0036233
381 Ga0495601_0104551
382 Ga0495612_0026913
383 Ga0495612_0032045
384 Ga0495595_0033594
385 Ga0495619_0000561
386 Ga0495619_0000661
387 Ga0500633_0003531
388 Ga0500636_0006085
389 2524463923
390 2739226292
391 2819564557
392 2884338875
393 2885386875
394 2904465202
395 2919088602
396 3005597765

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

106

349

0.87

PF12146

Hydrolase_4

Serine aminopeptidase, S33

102

338

0.83

PF12697

Abhydrolase_6

Alpha/beta hydrolase family

108

355

0.6

Structural Annotation

Top 5 Hits

ID Description Score Start End
8b6p-assembly1.cif.gz_A x-ray structure of the haloalkane dehalogenase halotag7 circular permutated at positions 154-156 (cphalotag7_154-156) 0.9599 34 154
8b6o-assembly1.cif.gz_A x-ray structure of the haloalkane dehalogenase halotag7 circular permutated at positions 141-156 (cphalotagdelta) fused to m13 0.9597 34 154
8b6p-assembly2.cif.gz_B x-ray structure of the haloalkane dehalogenase halotag7 circular permutated at positions 154-156 (cphalotag7_154-156) 0.9567 33 154
8b6n-assembly1.cif.gz_A x-ray structure of the haloalkane dehalogenase halotag7 circular permutated at positions 141-156 (cphalotagdelta) 0.9541 33 154
1j1i-assembly1.cif.gz_A-2 crystal structure of a his-tagged serine hydrolase involved in the carbazole degradation (carc enzyme) 0.8488 33 312
ID Description Score Start End Superfamily
af_P53750_3_288_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9576 33 309 3.40.50.1820
af_Q9NQF3_11_190_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9441 34 154 3.40.50.1820
af_P53750_3_288_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9249 33 309 3.40.50.1820
af_A0A0R0KMM0_1_93_3.40.50.12270 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9067 32 122 3.40.50.12270
af_A0A0P0WIT7_2_163_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.8764 47 160 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A4Q3IJ15-F1-model_v4 deleted 0.9999 33 143
AF-A0A1Y5DK68-F1-model_v4 Hydrolase 0.9973 33 139 GO:0004301
AF-A0A2S9FGM7-F1-model_v4 Alpha/beta hydrolase 0.9928 33 155 GO:0004301
AF-A0A2W6Z8P1-F1-model_v4 Alpha/beta hydrolase 0.9899 33 313 GO:0004301
AF-A0A4R3DUY6-F1-model_v4 Pimeloyl-ACP methyl ester carboxylesterase 0.9898 32 313 GO:0004301

Map