F300833

General Info

Members Datasets Scaffolds Average Seq Length
195 113 169 424

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3003665799|3003670893
Length 466
Sequence GADNKQGLTCPDEGETPRCPRMRPPSSGAGRPDRIGSRHHARYPPANRTSRIAGFHKKSPRERLDLVAAFADLSPAEVAHLAEFGNLSPDLADRLIENVIGTMTVPIGIATNMRIDGEDVLIPMATEESSVVAAVCNAARQVYEDGFTTSVSGNLMIAQVQVVGVSDPHAARLRILEQREALRTLCDACDPVLVRLGGGLRDVEVRVLDSLGGPMVVTHLIVDTRDAMGANAVNTMAEAVAPHIAGWSGGRVYLRILSNLADRRLARAHAVWRTDAIGGPEVRDGIVSAYHLAEADPYRAATHNKGIMNGIDAVVLATGNDTRAIEAGAHAYAARSGRYTSLTRYEVTASGDLSASIELPLAVGLVGGATKIHPTAQACLKILGATTAERLARIIAAVGLAQNFSALKALATTGIQKGHMALHAQNIAMMAGALGEEIEAVARVLVERRLVRLDVAQEVLGEMRAG

Samples

Sample ID Description Type Environment
1 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
2 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
3 2582580736 Prauserella sp. Am3 Isolate Unclassified
4 2643221561 Nocardioides sp. Root151 Isolate Unclassified
5 2643221696 Nocardioides sp. Root140 Isolate Unclassified
6 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
7 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
8 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
9 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
10 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
11 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
12 2858868258 Micromonospora sp. MH33 Isolate Unclassified
13 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
14 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
15 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
16 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
17 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
18 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
19 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
20 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
42 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
43 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
44 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
45 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
46 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
47 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
48 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
49 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
50 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
53 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
54 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
56 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
59 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
60 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
68 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
69 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
70 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
71 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
76 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
79 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
80 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
81 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
82 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
83 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
102 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
103 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
104 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
105 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
108 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
109 8019619141 Bradyrhizobium sp. GM7.3 Isolate Nodule
110 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
111 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified
112 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
113 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.56
Metatranscriptomes 4.1
Isolates 13.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.1
Nodule 1.03
Rhizoplane 0.51
Rhizosphere 73.33
Stem 0
Stem Tuber 0
Unclassified 21.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070671_100002889 3300005355 Bacteria 13373
2 Ga0070662_100118663 3300005457 Bacteria 2025
3 Ga0070706_100032543 3300005467 Bacteria 4810
4 Ga0070665_100015991 3300005548 Bacteria 7532
5 Ga0068858_100198728 3300005842 Bacteria 1895
6 Ga0081539_10000560 3300005985 Bacteria 76655
7 Ga0075365_10030173 3300006038 Bacteria 3471
8 Ga0075364_10038189 3300006051 Bacteria 3111
9 Ga0075431_100104570 3300006847 Bacteria 2922
10 Ga0111539_10009855 3300009094 Bacteria 12055
11 Ga0111539_10038386 3300009094 Bacteria 5775
12 Ga0111539_10295437 3300009094 Bacteria 1885
13 Ga0114129_10141383 3300009147 Bacteria 3299
14 Ga0209675_1001415 3300025291 Bacteria 13868
15 Ga0207684_10062081 3300025910 Bacteria 3173
16 Ga0207664_10104948 3300025929 Bacteria 2341
17 Ga0207644_10002591 3300025931 Bacteria 11643
18 Ga0207706_10111785 3300025933 Bacteria 2403
19 Ga0207668_10058174 3300025972 Bacteria 2701
20 Ga0207641_10012534 3300026088 Bacteria 6950
21 Ga0209970_1000998 3300027614 Bacteria 5030
22 Ga0268266_10006386 3300028379 Bacteria 10799
23 Ga0307513_10185103 3300031456 Bacteria 1941
24 Ga0307408_100000163 3300031548 Bacteria 73974
25 Ga0307508_10002126 3300031616 Bacteria 21243
26 Ga0316575_10003163 3300031665 Bacteria 5633
27 Ga0316575_10003492 3300031665 Bacteria 5429
28 Ga0316575_10052825 3300031665 Bacteria 1618
29 Ga0316579_10000768 3300031691 Bacteria 11015
30 Ga0316579_10004783 3300031691 Bacteria 5410
31 Ga0316579_10007343 3300031691 Bacteria 4548
32 Ga0316579_10012782 3300031691 Bacteria 3600
33 Ga0316579_10092819 3300031691 Bacteria 1442
34 Ga0316576_10006281 3300031727 Bacteria 7379
35 Ga0316576_10009849 3300031727 Bacteria 6185
36 Ga0316576_10015433 3300031727 Bacteria 5127
37 Ga0316576_10033603 3300031727 Bacteria 3652
38 Ga0316576_10034705 3300031727 Bacteria 3597
39 Ga0316578_10010798 3300031728 Bacteria 4753
40 Ga0316578_10025837 3300031728 Bacteria 3306
41 Ga0307516_10004619 3300031730 Bacteria 16895
42 Ga0316577_10003904 3300031733 Bacteria 7608
43 Ga0316577_10006211 3300031733 Bacteria 6307
44 Ga0316577_10028090 3300031733 Bacteria 3138
45 Ga0316577_10030992 3300031733 Bacteria 2987
46 Ga0316577_10088246 3300031733 Bacteria 1736
47 Ga0307406_10000518 3300031901 Bacteria 22163
48 Ga0307406_10001485 3300031901 Bacteria 12945
49 Ga0307414_10002600 3300032004 Bacteria 9496
50 Ga0307414_10048554 3300032004 Bacteria 2928
51 Ga0316585_10001847 3300032137 Bacteria 5662
52 Ga0316585_10002338 3300032137 Bacteria 5106
53 Ga0316585_10017466 3300032137 Bacteria 2169
54 Ga0316580_10000486 3300032139 Bacteria 9149
55 Ga0316593_10001127 3300032168 Bacteria 5646
56 Ga0316593_10004356 3300032168 Bacteria 3627
57 Ga0316593_10012667 3300032168 Unclassified 2480
58 Ga0316592_1001400 3300033524 Bacteria 3860
59 Ga0316588_1020848 3300033528 Bacteria 1487
60 Ga0316588_1026497 3300033528 Bacteria 1343
61 Ga0316596_1000829 3300033541 Bacteria 5750
62 Ga0316596_1013560 3300033541 Bacteria 2014
63 Ga0316574_0000901 3300035398 Bacteria 13141
64 Ga0316574_0002212 3300035398 Bacteria 9672
65 Ga0316574_0006860 3300035398 Bacteria 6193
66 Ga0316574_0007764 3300035398 Bacteria 5905
67 Ga0316574_0016410 3300035398 Bacteria 4316
68 Ga0316574_0024947 3300035398 Bacteria 3584
69 Ga0316574_0132733 3300035398 Bacteria 1602
70 Ga0316574_0142504 3300035398 Bacteria 1544
71 Ga0316582_0003994 3300036647 Bacteria 7372
72 Ga0316582_0005795 3300036647 Bacteria 6413
73 Ga0316582_0014152 3300036647 Bacteria 4518
74 Ga0316582_0014871 3300036647 Bacteria 4432
75 Ga0316582_0019592 3300036647 Bacteria 3964
76 Ga0316582_0040313 3300036647 Archaea 2914
77 Ga0316582_0098348 3300036647 Bacteria 1935
78 Ga0316582_0100886 3300036647 Bacteria 1911
79 Ga0316582_0197850 3300036647 Bacteria 1370
80 Ga0316584_0003097 3300036712 Bacteria 10729
81 Ga0316584_0016596 3300036712 Bacteria 5280
82 Ga0316584_0053185 3300036712 Bacteria 3030
83 Ga0316584_0121578 3300036712 Unclassified 1951
84 Ga0395899_0000573 3300037312 Bacteria 39212
85 Ga0395900_0000889 3300037418 Bacteria 39240
86 Ga0395898_0001197 3300037466 Bacteria 39238
87 Ga0395905_0000878 3300037471 Bacteria 39240
88 Ga0316581_0000077 3300037588 Bacteria 12256
89 Ga0395901_0000674 3300038443 Bacteria 39240
90 Ga0400490_24263 3300038726 Bacteria 3699
91 Ga0400483_126574 3300039062 Bacteria 2148
92 Ga0400483_236246 3300039062 Bacteria 2313
93 Ga0400489_10598 3300039093 Bacteria 2308
94 Ga0400489_36261 3300039093 Bacteria 3519
95 Ga0450891_002905 3300042129 Bacteria 1691
96 Ga0451577_0008167 3300042876 Bacteria 10201
97 Ga0451577_0034756 3300042876 Bacteria 4542
98 Ga0451577_0050558 3300042876 Bacteria 3710
99 Ga0451577_0140627 3300042876 Bacteria 2169
100 Ga0451577_0189949 3300042876 Bacteria 1853
101 Ga0451577_0268228 3300042876 Bacteria 1546
102 Ga0453683_0010427 3300044673 Bacteria 6159
103 Ga0453683_0110886 3300044673 Bacteria 1725
104 Ga0453684_0000056 3300044712 Bacteria 513389
105 Ga0453684_0000373 3300044712 Bacteria 183940
106 Ga0453684_0004855 3300044712 Bacteria 27599
107 Ga0453684_0005298 3300044712 Bacteria 25728
108 Ga0453684_0015087 3300044712 Bacteria 12260
109 Ga0453684_0038645 3300044712 Bacteria 6520
110 Ga0453684_0087919 3300044712 Bacteria 3849
111 Ga0453684_0090805 3300044712 Bacteria 3773
112 Ga0453684_0096437 3300044712 Bacteria 3633
113 Ga0453684_0145130 3300044712 Bacteria 2828
114 Ga0453684_0159878 3300044712 Bacteria 2666
115 Ga0453684_0295432 3300044712 Bacteria 1843
116 Ga0451576_0010156 3300045051 Bacteria 10831
117 Ga0496114_0000516 3300048917 Bacteria 28420
118 Ga0496117_0002147 3300048920 Bacteria 25757
119 Ga0496117_0020005 3300048920 Bacteria 5474
120 Ga0496118_0016994 3300048921 Bacteria 6644
121 Ga0496118_0024794 3300048921 Bacteria 5166
122 Ga0496118_0095252 3300048921 Bacteria 2033
123 Ga0496121_0189118 3300048924 Bacteria 1478
124 Ga0496122_0009513 3300048925 Bacteria 10223
125 Ga0496122_0047097 3300048925 Bacteria 3331
126 Ga0496122_0073585 3300048925 Bacteria 2422
127 Ga0496122_0113173 3300048925 Bacteria 1774
128 Ga0496124_0049001 3300048927 Bacteria 3605
129 Ga0496124_0138560 3300048927 Bacteria 1923
130 Ga0496125_0003379 3300048928 Bacteria 19436
131 Ga0496125_0005711 3300048928 Bacteria 13712
132 Ga0496125_0017628 3300048928 Bacteria 6801
133 Ga0496126_0039427 3300048929 Bacteria 4383
134 Ga0496126_0151397 3300048929 Bacteria 1988
135 Ga0501033_0041284 3300049570 Bacteria 3443
136 Ga0501033_0088835 3300049570 Bacteria 2261
137 Ga0501034_0010061 3300049571 Bacteria 9874
138 Ga0501034_0030694 3300049571 Bacteria 5462
139 Ga0501034_0274524 3300049571 Bacteria 1626
140 Ga0501036_0110805 3300049572 Bacteria 2319
141 Ga0501039_0108388 3300049575 Bacteria 2171
142 Ga0501043_0000004 3300049579 Bacteria 291085
143 Ga0501046_0000016 3300049580 Bacteria 234374
144 Ga0501047_0000012 3300049581 Bacteria 368824
145 Ga0501047_0225179 3300049581 Bacteria 1730
146 Ga0501048_0000091 3300049582 Bacteria 48347
147 Ga0501073_0024647 3300049589 Bacteria 4320
148 Ga0501073_0039185 3300049589 Bacteria 3358
149 Ga0501073_0118190 3300049589 Bacteria 1837
150 Ga0501076_0063863 3300049592 Bacteria 2934
151 Ga0501225_0000704 3300049705 Bacteria 10480
152 Ga0501080_0198110 3300049742 Bacteria 1844
153 Ga0501083_0043035 3300049744 Bacteria 3060
154 Ga0501035_0109919 3300049822 Bacteria 2416
155 Ga0501035_0131291 3300049822 Bacteria 2183
156 Ga0501044_0015456 3300049823 Bacteria 8221
157 Ga0501044_0075673 3300049823 Bacteria 3418
158 Ga0501045_0003390 3300049824 Bacteria 10912
159 nmdc:mga06r32_93978_c1 3300050510 Bacteria 2934
160 nmdc:mga08y16_152200_c1 3300050511 Bacteria 2404
161 nmdc:mga08y16_2958_c1 3300050511 Bacteria 17508
162 nmdc:mga08y16_31679_c1 3300050511 Bacteria 5559
163 Ga0500643_000909 3300053087 Bacteria 18733
164 Ga0500562_006268 3300053108 Bacteria 3000
165 Ga0500586_003209 3300053145 Bacteria 3836
166 Ga0500616_0033781 3300053153 Bacteria 2789
167 Ga0500634_0000074 3300053161 Bacteria 38994
168 Ga0501084_0001854 3300054114 Bacteria 16859
169 Ga0501082_0000027 3300060353 Bacteria 100915

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0189949 Ga0451577_0189949_695_1837 348
2 3300049742 Ga0501080_0198110 Ga0501080_0198110_17_1153 348
3 3300049592 Ga0501076_0063863 Ga0501076_0063863_1768_2919 351
4 3300031727 Ga0316576_10015433 Ga0316576_100154334 360
5 3300036647 Ga0316582_0040313 Ga0316582_0040313_1576_2742 363
6 3300035398 Ga0316574_0142504 Ga0316574_0142504_178_1461 372
7 3300038726 Ga0400490_24263 Ga0400490_24263_1795_3027 380
8 3300044712 Ga0453684_0145130 Ga0453684_0145130_933_2219 380
9 3300031730 Ga0307516_10004619 Ga0307516_100046192 381
10 3300053087 Ga0500643_000909 Ga0500643_000909_6373_7683 382
11 iso_pu_bacteria 2842775625 2842779877 382
12 3300031616 Ga0307508_10002126 Ga0307508_1000212617 383
13 3300036647 Ga0316582_0019592 Ga0316582_0019592_1780_3066 384
14 3300044712 Ga0453684_0295432 Ga0453684_0295432_52_1296 384
15 3300005457 Ga0070662_100118663 Ga0070662_1001186632 386
16 3300009094 Ga0111539_10295437 Ga0111539_102954372 386
17 3300025933 Ga0207706_10111785 Ga0207706_101117852 386
18 3300036712 Ga0316584_0121578 Ga0316584_0121578_201_1532 386
19 3300050511 nmdc:mga08y16_152200_c1 nmdc:mga08y16_152200_c1_363_1676 386
20 3300032137 Ga0316585_10017466 Ga0316585_100174661 389
21 3300025972 Ga0207668_10058174 Ga0207668_100581742 392
22 3300025291 Ga0209675_1001415 Ga0209675_100141515 393
23 3300031727 Ga0316576_10034705 Ga0316576_100347053 393
24 3300039093 Ga0400489_36261 Ga0400489_36261_2024_3307 393
25 3300044712 Ga0453684_0000373 Ga0453684_0000373_121885_123156 393
26 iso_pu_bacteria 2828305725 2828309817 393
27 iso_pu_bacteria 2643221561 2643827573 394
28 iso_pu_bacteria 2643221696 2644533598 394
29 iso_pu_bacteria 2857737099 2857739188 394
30 iso_pu_bacteria 2863067949 2863075250 394
31 3300005467 Ga0070706_100032543 Ga0070706_1000325433 395
32 3300025910 Ga0207684_10062081 Ga0207684_100620812 395
33 3300031665 Ga0316575_10003163 Ga0316575_100031632 395
34 3300031691 Ga0316579_10007343 Ga0316579_100073432 395
35 3300031727 Ga0316576_10006281 Ga0316576_100062816 395
36 3300031727 Ga0316576_10009849 Ga0316576_100098493 395
37 3300031727 Ga0316576_10033603 Ga0316576_100336033 395
38 3300031728 Ga0316578_10025837 Ga0316578_100258372 395
39 3300031733 Ga0316577_10006211 Ga0316577_100062116 395
40 3300031733 Ga0316577_10028090 Ga0316577_100280901 395
41 3300032137 Ga0316585_10001847 Ga0316585_100018472 395
42 3300032139 Ga0316580_10000486 Ga0316580_100004865 395
43 3300032168 Ga0316593_10001127 Ga0316593_100011273 395
44 3300032168 Ga0316593_10004356 Ga0316593_100043562 395
45 3300032168 Ga0316593_10012667 Ga0316593_100126671 395
46 3300033524 Ga0316592_1001400 Ga0316592_10014001 395
47 3300033528 Ga0316588_1020848 Ga0316588_10208482 395
48 3300033528 Ga0316588_1026497 Ga0316588_10264971 395
49 3300033541 Ga0316596_1000829 Ga0316596_10008291 395
50 3300033541 Ga0316596_1013560 Ga0316596_10135602 395
51 3300035398 Ga0316574_0000901 Ga0316574_0000901_8637_9926 395
52 3300035398 Ga0316574_0016410 Ga0316574_0016410_2571_3863 395
53 3300035398 Ga0316574_0024947 Ga0316574_0024947_1511_2806 395
54 3300035398 Ga0316574_0132733 Ga0316574_0132733_180_1472 395
55 3300036647 Ga0316582_0014871 Ga0316582_0014871_247_1536 395
56 3300036647 Ga0316582_0098348 Ga0316582_0098348_606_1898 395
57 3300036647 Ga0316582_0197850 Ga0316582_0197850_68_1345 395
58 3300036712 Ga0316584_0003097 Ga0316584_0003097_6544_7833 395
59 3300036712 Ga0316584_0016596 Ga0316584_0016596_272_1564 395
60 3300037588 Ga0316581_0000077 Ga0316581_0000077_2708_3997 395
61 3300042876 Ga0451577_0008167 Ga0451577_0008167_2229_3512 395
62 3300042876 Ga0451577_0050558 Ga0451577_0050558_259_1536 395
63 3300042876 Ga0451577_0140627 Ga0451577_0140627_872_2155 395
64 3300044673 Ga0453683_0010427 Ga0453683_0010427_4802_6085 395
65 3300044712 Ga0453684_0090805 Ga0453684_0090805_2074_3357 395
66 3300045051 Ga0451576_0010156 Ga0451576_0010156_2172_3455 395
67 3300049589 Ga0501073_0024647 Ga0501073_0024647_2913_4196 395
68 3300049589 Ga0501073_0039185 Ga0501073_0039185_989_2272 395
69 3300054114 Ga0501084_0001854 Ga0501084_0001854_3019_4302 395
70 iso_pu_bacteria 2945968032 2945968932 395
71 3300006847 Ga0075431_100104570 Ga0075431_1001045702 396
72 3300009094 Ga0111539_10038386 Ga0111539_100383863 396
73 3300009147 Ga0114129_10141383 Ga0114129_101413834 396
74 3300042876 Ga0451577_0034756 Ga0451577_0034756_2275_3561 396
75 3300044712 Ga0453684_0000056 Ga0453684_0000056_53663_54949 396
76 3300044712 Ga0453684_0004855 Ga0453684_0004855_6380_7666 396
77 3300044712 Ga0453684_0005298 Ga0453684_0005298_21598_22920 396
78 3300048924 Ga0496121_0189118 Ga0496121_0189118_152_1435 396
79 3300048928 Ga0496125_0017628 Ga0496125_0017628_977_2260 396
80 3300049570 Ga0501033_0088835 Ga0501033_0088835_30_1313 396
81 3300049571 Ga0501034_0274524 Ga0501034_0274524_71_1354 396
82 3300049572 Ga0501036_0110805 Ga0501036_0110805_322_1605 396
83 3300049575 Ga0501039_0108388 Ga0501039_0108388_767_2050 396
84 3300049581 Ga0501047_0225179 Ga0501047_0225179_205_1488 396
85 3300049589 Ga0501073_0118190 Ga0501073_0118190_278_1573 396
86 3300049822 Ga0501035_0109919 Ga0501035_0109919_100_1383 396
87 3300049822 Ga0501035_0131291 Ga0501035_0131291_554_1837 396
88 3300050510 nmdc:mga06r32_93978_c1 nmdc:mga06r32_93978_c1_1028_2320 396
89 3300050511 nmdc:mga08y16_31679_c1 nmdc:mga08y16_31679_c1_2230_3510 396
90 iso_pu_bacteria 2522572158 2523107839 396
91 iso_pu_bacteria 2582580736 2583152576 396
92 iso_pu_bacteria 2738541308 2738890218 396
93 iso_pu_bacteria 2857723135 2857726228 396
94 iso_pu_bacteria 2857729791 2857732424 396
95 iso_pu_bacteria 2883354860 2883355417 396
96 iso_pu_bacteria 2928121344 2928122763 396
97 iso_pu_bacteria 2996310559 2996313369 396
98 iso_pu_bacteria 8016583857 8016594011 396
99 iso_pu_bacteria 8019619141 8019624709 396
100 iso_pu_bacteria 8048127548 8048131770 396
101 iso_pu_bacteria 8048746797 8048748730 396
102 iso_pu_bacteria 8056207758 8056211645 396
103 3300031691 Ga0316579_10012782 Ga0316579_100127823 397
104 3300031728 Ga0316578_10010798 Ga0316578_100107982 397
105 3300031733 Ga0316577_10030992 Ga0316577_100309922 397
106 3300036647 Ga0316582_0014152 Ga0316582_0014152_3141_4433 397
107 3300036712 Ga0316584_0053185 Ga0316584_0053185_151_1443 397
108 3300039062 Ga0400483_126574 Ga0400483_126574_84_1373 397
109 3300039062 Ga0400483_236246 Ga0400483_236246_117_1406 397
110 3300039093 Ga0400489_10598 Ga0400489_10598_484_1755 397
111 3300044673 Ga0453683_0110886 Ga0453683_0110886_87_1499 397
112 3300044712 Ga0453684_0038645 Ga0453684_0038645_2224_3513 397
113 3300044712 Ga0453684_0096437 Ga0453684_0096437_633_1922 397
114 3300044712 Ga0453684_0159878 Ga0453684_0159878_213_1595 397
115 iso_pu_bacteria 2919704043 2919707331 397
116 iso_pu_bacteria 3003665799 3003670893 397
117 3300005842 Ga0068858_100198728 Ga0068858_1001987282 398
118 3300009094 Ga0111539_10009855 Ga0111539_100098558 398
119 3300031665 Ga0316575_10052825 Ga0316575_100528252 398
120 3300035398 Ga0316574_0006860 Ga0316574_0006860_1312_2619 398
121 3300036647 Ga0316582_0100886 Ga0316582_0100886_561_1868 398
122 3300044712 Ga0453684_0015087 Ga0453684_0015087_2809_4110 398
123 3300044712 Ga0453684_0087919 Ga0453684_0087919_1862_3169 398
124 3300048920 Ga0496117_0020005 Ga0496117_0020005_3100_4371 398
125 3300048921 Ga0496118_0024794 Ga0496118_0024794_2409_3680 398
126 3300048925 Ga0496122_0047097 Ga0496122_0047097_2046_3317 398
127 3300048927 Ga0496124_0138560 Ga0496124_0138560_632_1903 398
128 3300050511 nmdc:mga08y16_2958_c1 nmdc:mga08y16_2958_c1_3091_4389 398
129 3300053153 Ga0500616_0033781 Ga0500616_0033781_1371_2651 398
130 iso_pu_bacteria 8054002106 8054007681 398
131 3300031548 Ga0307408_100000163 Ga0307408_1000001639 399
132 3300031665 Ga0316575_10003492 Ga0316575_100034924 399
133 3300031691 Ga0316579_10000768 Ga0316579_100007685 399
134 3300031691 Ga0316579_10004783 Ga0316579_100047831 399
135 3300031691 Ga0316579_10092819 Ga0316579_100928192 399
136 3300031733 Ga0316577_10003904 Ga0316577_100039042 399
137 3300031733 Ga0316577_10088246 Ga0316577_100882462 399
138 3300031901 Ga0307406_10001485 Ga0307406_100014856 399
139 3300032137 Ga0316585_10002338 Ga0316585_100023385 399
140 3300035398 Ga0316574_0002212 Ga0316574_0002212_4826_6187 399
141 3300035398 Ga0316574_0007764 Ga0316574_0007764_1741_3054 399
142 3300036647 Ga0316582_0003994 Ga0316582_0003994_3670_5031 399
143 3300036647 Ga0316582_0005795 Ga0316582_0005795_1210_2523 399
144 3300042129 Ga0450891_002905 Ga0450891_002905_55_1338 399
145 3300042876 Ga0451577_0268228 Ga0451577_0268228_108_1424 399
146 3300048929 Ga0496126_0151397 Ga0496126_0151397_617_1888 399
147 3300049571 Ga0501034_0030694 Ga0501034_0030694_3456_4727 399
148 3300049579 Ga0501043_0000004 Ga0501043_0000004_226271_227551 399
149 3300049580 Ga0501046_0000016 Ga0501046_0000016_64285_65565 399
150 3300049581 Ga0501047_0000012 Ga0501047_0000012_63965_65245 399
151 3300049582 Ga0501048_0000091 Ga0501048_0000091_22971_24251 399
152 3300049705 Ga0501225_0000704 Ga0501225_0000704_6512_7798 399
153 3300049824 Ga0501045_0003390 Ga0501045_0003390_3380_4660 399
154 iso_pu_bacteria 2515154137 2515757270 399
155 iso_pu_bacteria 2858868258 2858868325 399
156 3300005985 Ga0081539_10000560 Ga0081539_1000056058 400
157 3300006051 Ga0075364_10038189 Ga0075364_100381893 400
158 3300025929 Ga0207664_10104948 Ga0207664_101049482 400
159 3300027614 Ga0209970_1000998 Ga0209970_10009983 400
160 3300031456 Ga0307513_10185103 Ga0307513_101851031 400
161 3300031901 Ga0307406_10000518 Ga0307406_1000051821 400
162 3300032004 Ga0307414_10002600 Ga0307414_100026008 400
163 3300032004 Ga0307414_10048554 Ga0307414_100485544 400
164 3300037312 Ga0395899_0000573 Ga0395899_0000573_27292_28566 400
165 3300037418 Ga0395900_0000889 Ga0395900_0000889_10675_11949 400
166 3300037466 Ga0395898_0001197 Ga0395898_0001197_27290_28564 400
167 3300037471 Ga0395905_0000878 Ga0395905_0000878_27292_28566 400
168 3300038443 Ga0395901_0000674 Ga0395901_0000674_10675_11949 400
169 3300048917 Ga0496114_0000516 Ga0496114_0000516_8395_9669 400
170 3300048920 Ga0496117_0002147 Ga0496117_0002147_20593_21873 400
171 3300048921 Ga0496118_0016994 Ga0496118_0016994_1598_2878 400
172 3300048921 Ga0496118_0095252 Ga0496118_0095252_105_1379 400
173 3300048925 Ga0496122_0009513 Ga0496122_0009513_4979_6259 400
174 3300048925 Ga0496122_0073585 Ga0496122_0073585_1130_2404 400
175 3300048925 Ga0496122_0113173 Ga0496122_0113173_112_1392 400
176 3300048927 Ga0496124_0049001 Ga0496124_0049001_2248_3525 400
177 3300048928 Ga0496125_0003379 Ga0496125_0003379_9861_11141 400
178 3300048928 Ga0496125_0005711 Ga0496125_0005711_3815_5095 400
179 3300048929 Ga0496126_0039427 Ga0496126_0039427_520_1800 400
180 3300049570 Ga0501033_0041284 Ga0501033_0041284_658_1932 400
181 3300049571 Ga0501034_0010061 Ga0501034_0010061_8038_9318 400
182 3300049744 Ga0501083_0043035 Ga0501083_0043035_742_2016 400
183 3300049823 Ga0501044_0015456 Ga0501044_0015456_2330_3604 400
184 3300049823 Ga0501044_0075673 Ga0501044_0075673_1622_2896 400
185 3300053108 Ga0500562_006268 Ga0500562_006268_804_2105 400
186 3300053145 Ga0500586_003209 Ga0500586_003209_1483_2775 400
187 3300053161 Ga0500634_0000074 Ga0500634_0000074_20255_21538 400
188 3300060353 Ga0501082_0000027 Ga0501082_0000027_93793_95067 400
189 iso_pu_bacteria 2946080515 2946083336 400
190 3300005355 Ga0070671_100002889 Ga0070671_1000028892 401
191 3300005548 Ga0070665_100015991 Ga0070665_1000159916 401
192 3300006038 Ga0075365_10030173 Ga0075365_100301734 401
193 3300025931 Ga0207644_10002591 Ga0207644_100025912 401
194 3300026088 Ga0207641_10012534 Ga0207641_100125344 401
195 3300028379 Ga0268266_10006386 Ga0268266_100063867 401

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00368

HMG-CoA_red

Hydroxymethylglutaryl-coenzyme A reductase

59

424

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6dio-assembly1.cif.gz_A structure of class ii hmg-coa reductase from delftia acidovorans with nad bound 0.9637 3 340
6p7k-assembly1.cif.gz_A structure of hmg-coa reductase from burkholderia cenocepacia 0.9583 1 341
5wpj-assembly1.cif.gz_A structure of the class ii 3-hydroxy-3-methylglutaryl-coa reductase from streptococcus pneumoniae bound to nadph in open conformations 0.9572 8 340
3qae-assembly1.cif.gz_A-2 3-hydroxy-3-methylglutaryl-coenzyme a reductase of streptococcus pneumoniae 0.9561 8 340
4i4b-assembly1.cif.gz_B hmg-coa reductase from pseudomonas mevalonii complexed with nad and intermediate hemiacetal form of hmg-coa 0.9486 4 344
ID Description Score Start End Superfamily
1qaxA01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.9776 112 219 3.30.70.420
3qauA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.9738 111 215 3.30.70.420
1qaxA01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.9516 112 219 3.30.70.420
af_Q2FV77_209_372_3.90.770.10 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.948 212 343 3.90.770.10
4i4bA01 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.9352 4 340 3.90.770.10
ID Description Score Start End GO Terms
AF-Q9C4N6-F1-model_v4 Putative 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) 0.9908 59 340 GO:0004420
GO:0008299
GO:0015936
AF-U0EG18-F1-model_v4 deleted 0.9887 1 340
AF-A0A2M7P7V7-F1-model_v4 3-hydroxy-3-methylglutaryl-CoA reductase 0.9873 112 182
AF-Q9C4N8-F1-model_v4 Putative 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) 0.9867 59 256 GO:0004420
GO:0008299
GO:0015936
AF-T1AIG1-F1-model_v4 Hydroxymethylglutaryl-CoA reductase, degradative 0.9809 71 327 GO:0004420
GO:0015936

Feature Viewer

pLDDT pTM Quality
89.73 0.78 High
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Predicted Structure (AlphaFold2)

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