F290727

General Info

Members Datasets Scaffolds Average Seq Length
189 147 378 433

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10029475|Ga0075364_100294752
Length 447
Sequence MKTQAGDLLAVHGGTPVRTNPWQDNFTIGNEEKQAALAALDSGYLSLFEGSHTPDLPFSFWGGPWVQQFERDWASAYGARYAVSVNSATSGLMAAIGALNLGYGDEIIVSPYTMSACASSALVYGAIPVFADVDRATGSLDPASIRAAITPRTRAVLVVHQFGIPADMDSIMEIARTHDLKVIEDCAQAHGAKYRGTPVGTIGDVGVFSLNVNKTIQTGEGGVCVTNDEDVRYRLALIRNHGEAVVEAAGYRQIENIIGFNYRMTEVTAAIGIEQLKKLPGLNQTRLAHVAALSDALARHSFLQAPPACCHGMQAGNCGCLSTYYVYPLRFHSERIGISRATFVDALRAEGIPMAAGYVRPLYLQPIYQSRKAFKHGYPFTAPENAESRPNYERGACPVAEVLHYEQMLINEHVRPPHTLEDVLDIAKAVDKVERAVRAGRLASAVS

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
71 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
82 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
89 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
90 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
91 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
92 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
93 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
96 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
97 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
100 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
101 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
102 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
103 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
104 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
105 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
106 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
107 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
108 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
127 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
128 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
129 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
130 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
131 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
132 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
133 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
136 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
137 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
138 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
139 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
140 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
141 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
142 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
143 2643221645 Massilia sp. Root351 Isolate Unclassified
144 2643221664 Massilia sp. Root418 Isolate Unclassified
145 2738541300 Massilia sp. GV016 Isolate Unclassified
146 2738543018 Massilia sp. GV045 Isolate Unclassified
147 2738543030 Massilia sp. GV097 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.35
Metatranscriptomes 0
Isolates 2.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.76
Nodule 0
Rhizoplane 2.12
Rhizosphere 90.48
Stem 0
Stem Tuber 0
Unclassified 5.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10029475 3300006051 Bacteria 3520
2 Ga0070658_10132415 3300005327 Bacteria 2078
3 Ga0070690_100034754 3300005330 Bacteria 3160
4 Ga0070690_100113376 3300005330 Bacteria 1812
5 Ga0068869_100016772 3300005334 Bacteria 4946
6 Ga0068869_100042821 3300005334 Bacteria 3249
7 Ga0070668_100188746 3300005347 Bacteria 1687
8 Ga0070675_100023086 3300005354 Bacteria 4971
9 Ga0070671_100016039 3300005355 Bacteria 6053
10 Ga0070674_100050251 3300005356 Bacteria 2870
11 Ga0070688_100080069 3300005365 Bacteria 2112
12 Ga0070667_100092868 3300005367 Bacteria 2598
13 Ga0070701_10020436 3300005438 Bacteria 3144
14 Ga0070700_100012932 3300005441 Bacteria 4676
15 Ga0070708_100001464 3300005445 Bacteria 18012
16 Ga0070663_100175796 3300005455 Bacteria 1658
17 Ga0070678_100235708 3300005456 Bacteria 1528
18 Ga0068867_100001591 3300005459 Bacteria 15777
19 Ga0070706_100000063 3300005467 Bacteria 129205
20 Ga0070707_100018925 3300005468 Bacteria 6485
21 Ga0070698_100043228 3300005471 Bacteria 4621
22 Ga0070686_100070497 3300005544 Bacteria 2286
23 Ga0070686_100091650 3300005544 Bacteria 2034
24 Ga0070704_100188148 3300005549 Bacteria 1657
25 Ga0068855_100023609 3300005563 Bacteria 7366
26 Ga0070702_100071912 3300005615 Bacteria 2046
27 Ga0068852_100105033 3300005616 Bacteria 2558
28 Ga0068861_100005074 3300005719 Bacteria 8882
29 Ga0068870_10092680 3300005840 Bacteria 1692
30 Ga0068863_100084251 3300005841 Bacteria 3013
31 Ga0068858_100007038 3300005842 Bacteria 10923
32 Ga0068860_100010337 3300005843 Bacteria 9229
33 Ga0081455_10045242 3300005937 Bacteria 3831
34 Ga0075366_10000661 3300006195 Bacteria 16227
35 Ga0075366_10105846 3300006195 Bacteria 1691
36 Ga0075370_10040364 3300006353 Unclassified 2632
37 Ga0068871_100120296 3300006358 Bacteria 2217
38 Ga0068865_100019683 3300006881 Bacteria 4369
39 Ga0105243_10003028 3300009148 Bacteria 13853
40 Ga0105242_10055964 3300009176 Bacteria 3227
41 Ga0105242_10065786 3300009176 Bacteria 2992
42 Ga0105237_10301907 3300009545 Bacteria 1604
43 Ga0105239_10003027 3300010375 Bacteria 20928
44 Ga0157374_10001079 3300013296 Bacteria 23616
45 Ga0157378_10063575 3300013297 Bacteria 3298
46 Ga0163162_10019801 3300013306 Bacteria 6607
47 Ga0157372_10110445 3300013307 Bacteria 3149
48 Ga0157372_10304932 3300013307 Unclassified 1853
49 Ga0157379_10110159 3300014968 Bacteria 2473
50 Ga0157379_10180626 3300014968 Bacteria 1906
51 Ga0157376_10002243 3300014969 Bacteria 13032
52 Ga0157376_10112654 3300014969 Bacteria 2397
53 Ga0163161_10004065 3300017792 Bacteria 10230
54 Ga0207643_10009319 3300025908 Bacteria 5276
55 Ga0207684_10000018 3300025910 Bacteria 361536
56 Ga0207646_10017847 3300025922 Bacteria 6627
57 Ga0207659_10063161 3300025926 Bacteria 2676
58 Ga0207686_10061384 3300025934 Bacteria 2383
59 Ga0207704_10024934 3300025938 Bacteria 3254
60 Ga0207691_10010529 3300025940 Bacteria 8875
61 Ga0207711_10157673 3300025941 Bacteria 2052
62 Ga0207689_10034950 3300025942 Bacteria 4175
63 Ga0207689_10045831 3300025942 Bacteria 3615
64 Ga0207667_10101926 3300025949 Unclassified 2961
65 Ga0207651_10089779 3300025960 Bacteria 2245
66 Ga0207668_10158389 3300025972 Bacteria 1761
67 Ga0207640_10082670 3300025981 Bacteria 2200
68 Ga0207640_10111677 3300025981 Bacteria 1939
69 Ga0207677_10120876 3300026023 Bacteria 1970
70 Ga0207703_10014259 3300026035 Bacteria 6198
71 Ga0207678_10084875 3300026067 Bacteria 2708
72 Ga0207708_10069148 3300026075 Bacteria 2703
73 Ga0207641_10264898 3300026088 Bacteria 1610
74 Ga0207648_10002435 3300026089 Bacteria 20012
75 Ga0207675_100002391 3300026118 Bacteria 18579
76 Ga0207683_10092050 3300026121 Bacteria 2702
77 Ga0207698_10110074 3300026142 Bacteria 2306
78 Ga0207698_10141599 3300026142 Bacteria 2073
79 Ga0209998_10000927 3300027717 Bacteria 7500
80 Ga0268264_10051449 3300028381 Bacteria 3432
81 Ga0265318_10023851 3300028577 Bacteria 2434
82 Ga0265322_10008679 3300028654 Unclassified 2961
83 Ga0265338_10005105 3300028800 Bacteria 17317
84 Ga0265320_10000811 3300031240 Bacteria 23705
85 Ga0265320_10075787 3300031240 Unclassified 1577
86 Ga0265327_10000022 3300031251 Bacteria 402724
87 Ga0265316_10005311 3300031344 Bacteria 12560
88 Ga0265314_10025008 3300031711 Bacteria 4513
89 Ga0307405_10131482 3300031731 Bacteria 1730
90 Ga0307413_10098817 3300031824 Bacteria 1923
91 Ga0307413_10110070 3300031824 Bacteria 1842
92 Ga0307409_100102674 3300031995 Bacteria 2376
93 Ga0307416_100004657 3300032002 Bacteria 8306
94 Ga0307416_100271500 3300032002 Bacteria 1665
95 Ga0307415_100002081 3300032126 Bacteria 9892
96 Ga0373941_0002355 3300035115 Unclassified 4147
97 Ga0395899_0000707 3300037312 Bacteria 33548
98 Ga0395900_0000143 3300037418 Bacteria 120234
99 Ga0395900_0017114 3300037418 Bacteria 7401
100 Ga0395900_0037953 3300037418 Bacteria 4967
101 Ga0395900_0313864 3300037418 Bacteria 1550
102 Ga0395898_0021482 3300037466 Bacteria 6546
103 Ga0395905_0000045 3300037471 Bacteria 241370
104 Ga0395905_0002754 3300037471 Bacteria 19250
105 Ga0395905_0009645 3300037471 Bacteria 9422
106 Ga0395905_0015990 3300037471 Bacteria 7132
107 Ga0395905_0096727 3300037471 Bacteria 2772
108 Ga0395901_0000293 3300038443 Bacteria 61974
109 Ga0395901_0004993 3300038443 Bacteria 13394
110 Ga0436360_0481865 3300039438 Bacteria 3708
111 Ga0436360_1302378 3300039438 Bacteria 1465
112 Ga0436361_0156142 3300039447 Unclassified 2371
113 Ga0451577_0035987 3300042876 Bacteria 4460
114 Ga0451577_0050761 3300042876 Bacteria 3702
115 Ga0453683_0003268 3300044673 Bacteria 12048
116 Ga0466965_0002716 3300044683 Bacteria 7580
117 Ga0466965_0011409 3300044683 Bacteria 4165
118 Ga0466961_0110046 3300044693 Bacteria 1734
119 Ga0453684_0001670 3300044712 Bacteria 60115
120 Ga0453684_0030571 3300044712 Bacteria 7603
121 Ga0466968_0012092 3300044735 Bacteria 3372
122 Ga0466957_0000396 3300044842 Bacteria 21229
123 Ga0466959_0008493 3300045049 Bacteria 7268
124 Ga0451576_0007491 3300045051 Bacteria 13023
125 Ga0451576_0219507 3300045051 Bacteria 1985
126 Ga0495606_0003209 3300046507 Bacteria 17617
127 Ga0495616_0006105 3300046513 Bacteria 7340
128 Ga0495643_0025422 3300046522 Bacteria 3350
129 Ga0495597_0001327 3300046542 Bacteria 18078
130 Ga0495625_0034355 3300046660 Bacteria 3743
131 Ga0495659_0013318 3300046664 Bacteria 2678
132 Ga0495661_0000547 3300046665 Bacteria 38904
133 Ga0495661_0024251 3300046665 Bacteria 3928
134 Ga0495588_0000142 3300046674 Bacteria 104418
135 Ga0495660_0001441 3300046810 Bacteria 16291
136 Ga0495660_0047251 3300046810 Bacteria 2358
137 Ga0495687_000165 3300047443 Bacteria 99031
138 Ga0496102_0066485 3300048905 Bacteria 3304
139 Ga0496102_0126255 3300048905 Bacteria 2391
140 Ga0496104_0086060 3300048907 Bacteria 3001
141 Ga0496106_0009022 3300048909 Bacteria 7369
142 Ga0501032_0003898 3300049569 Bacteria 11321
143 Ga0501033_0007179 3300049570 Bacteria 8694
144 Ga0501034_0003191 3300049571 Bacteria 18833
145 Ga0501034_0054207 3300049571 Bacteria 4037
146 Ga0501036_0001611 3300049572 Bacteria 17448
147 Ga0501037_0001207 3300049573 Bacteria 19105
148 Ga0501037_0001809 3300049573 Bacteria 15533
149 Ga0501037_0100212 3300049573 Bacteria 2091
150 Ga0501038_0001199 3300049574 Bacteria 23507
151 Ga0501038_0024463 3300049574 Bacteria 5388
152 Ga0501043_0022813 3300049579 Bacteria 4907
153 Ga0501047_0002190 3300049581 Bacteria 18700
154 Ga0501048_0147423 3300049582 Bacteria 1664
155 Ga0501068_0000519 3300049584 Bacteria 19502
156 Ga0501068_0030783 3300049584 Bacteria 3185
157 Ga0501070_0001809 3300049586 Bacteria 18852
158 Ga0501070_0004223 3300049586 Bacteria 12351
159 Ga0501071_0007032 3300049587 Bacteria 7352
160 Ga0501071_0152519 3300049587 Bacteria 1724
161 Ga0501073_0001908 3300049589 Bacteria 15537
162 Ga0501074_0018434 3300049590 Bacteria 5070
163 Ga0501074_0018859 3300049590 Bacteria 5011
164 Ga0501223_006074 3300049663 Bacteria 2513
165 Ga0501235_000104 3300049669 Bacteria 13528
166 Ga0501221_001800 3300049704 Bacteria 3580
167 Ga0501234_004754 3300049707 Bacteria 2130
168 Ga0501080_0001296 3300049742 Bacteria 20798
169 Ga0501080_0004439 3300049742 Bacteria 12482
170 Ga0501241_001822 3300049758 Bacteria 4205
171 Ga0501268_002861 3300049765 Bacteria 2314
172 Ga0501035_0003962 3300049822 Bacteria 14112
173 Ga0501044_0004453 3300049823 Bacteria 15668
174 Ga0501044_0005189 3300049823 Bacteria 14496
175 nmdc:mga00v17_51426_c1 3300050491 Unclassified 2505
176 nmdc:mga0k408_3506_c1 3300050493 Bacteria 8294
177 nmdc:mga07m45_21060_c1 3300050496 Unclassified 2632
178 Ga0500642_0055459 3300053130 Unclassified 1763
179 Ga0500616_0083110 3300053153 Bacteria 1605
180 Ga0501084_0093627 3300054114 Bacteria 2523
181 Ga0501082_0030806 3300060353 Bacteria 4624
182 Ga0501082_0196436 3300060353 Bacteria 1755
183 Ga0466962_0037680 3300061719 Bacteria 2316
184 Ga0466962_0088764 3300061719 Bacteria 1481
185 2644250450 2643221645 Bacteria 7207331
186 2644356023 2643221664 Bacteria 7272945
187 2738842416 2738541300 Bacteria 6675882
188 2739273163 2738543018 Bacteria 6718814
189 2739342207 2738543030 Bacteria 6719714
190 Ga0075364_10029475
191 Ga0070658_10132415
192 Ga0070690_100034754
193 Ga0070690_100113376
194 Ga0068869_100016772
195 Ga0068869_100042821
196 Ga0070668_100188746
197 Ga0070675_100023086
198 Ga0070671_100016039
199 Ga0070674_100050251
200 Ga0070688_100080069
201 Ga0070667_100092868
202 Ga0070701_10020436
203 Ga0070700_100012932
204 Ga0070708_100001464
205 Ga0070663_100175796
206 Ga0070678_100235708
207 Ga0068867_100001591
208 Ga0070706_100000063
209 Ga0070707_100018925
210 Ga0070698_100043228
211 Ga0070686_100070497
212 Ga0070686_100091650
213 Ga0070704_100188148
214 Ga0068855_100023609
215 Ga0070702_100071912
216 Ga0068852_100105033
217 Ga0068861_100005074
218 Ga0068870_10092680
219 Ga0068863_100084251
220 Ga0068858_100007038
221 Ga0068860_100010337
222 Ga0081455_10045242
223 Ga0075366_10000661
224 Ga0075366_10105846
225 Ga0075370_10040364
226 Ga0068871_100120296
227 Ga0068865_100019683
228 Ga0105243_10003028
229 Ga0105242_10055964
230 Ga0105242_10065786
231 Ga0105237_10301907
232 Ga0105239_10003027
233 Ga0157374_10001079
234 Ga0157378_10063575
235 Ga0163162_10019801
236 Ga0157372_10110445
237 Ga0157372_10304932
238 Ga0157379_10110159
239 Ga0157379_10180626
240 Ga0157376_10002243
241 Ga0157376_10112654
242 Ga0163161_10004065
243 Ga0207643_10009319
244 Ga0207684_10000018
245 Ga0207646_10017847
246 Ga0207659_10063161
247 Ga0207686_10061384
248 Ga0207704_10024934
249 Ga0207691_10010529
250 Ga0207711_10157673
251 Ga0207689_10034950
252 Ga0207689_10045831
253 Ga0207667_10101926
254 Ga0207651_10089779
255 Ga0207668_10158389
256 Ga0207640_10082670
257 Ga0207640_10111677
258 Ga0207677_10120876
259 Ga0207703_10014259
260 Ga0207678_10084875
261 Ga0207708_10069148
262 Ga0207641_10264898
263 Ga0207648_10002435
264 Ga0207675_100002391
265 Ga0207683_10092050
266 Ga0207698_10110074
267 Ga0207698_10141599
268 Ga0209998_10000927
269 Ga0268264_10051449
270 Ga0265318_10023851
271 Ga0265322_10008679
272 Ga0265338_10005105
273 Ga0265320_10000811
274 Ga0265320_10075787
275 Ga0265327_10000022
276 Ga0265316_10005311
277 Ga0265314_10025008
278 Ga0307405_10131482
279 Ga0307413_10098817
280 Ga0307413_10110070
281 Ga0307409_100102674
282 Ga0307416_100004657
283 Ga0307416_100271500
284 Ga0307415_100002081
285 Ga0373941_0002355
286 Ga0395899_0000707
287 Ga0395900_0000143
288 Ga0395900_0017114
289 Ga0395900_0037953
290 Ga0395900_0313864
291 Ga0395898_0021482
292 Ga0395905_0000045
293 Ga0395905_0002754
294 Ga0395905_0009645
295 Ga0395905_0015990
296 Ga0395905_0096727
297 Ga0395901_0000293
298 Ga0395901_0004993
299 Ga0436360_0481865
300 Ga0436360_1302378
301 Ga0436361_0156142
302 Ga0451577_0035987
303 Ga0451577_0050761
304 Ga0453683_0003268
305 Ga0466965_0002716
306 Ga0466965_0011409
307 Ga0466961_0110046
308 Ga0453684_0001670
309 Ga0453684_0030571
310 Ga0466968_0012092
311 Ga0466957_0000396
312 Ga0466959_0008493
313 Ga0451576_0007491
314 Ga0451576_0219507
315 Ga0495606_0003209
316 Ga0495616_0006105
317 Ga0495643_0025422
318 Ga0495597_0001327
319 Ga0495625_0034355
320 Ga0495659_0013318
321 Ga0495661_0000547
322 Ga0495661_0024251
323 Ga0495588_0000142
324 Ga0495660_0001441
325 Ga0495660_0047251
326 Ga0495687_000165
327 Ga0496102_0066485
328 Ga0496102_0126255
329 Ga0496104_0086060
330 Ga0496106_0009022
331 Ga0501032_0003898
332 Ga0501033_0007179
333 Ga0501034_0003191
334 Ga0501034_0054207
335 Ga0501036_0001611
336 Ga0501037_0001207
337 Ga0501037_0001809
338 Ga0501037_0100212
339 Ga0501038_0001199
340 Ga0501038_0024463
341 Ga0501043_0022813
342 Ga0501047_0002190
343 Ga0501048_0147423
344 Ga0501068_0000519
345 Ga0501068_0030783
346 Ga0501070_0001809
347 Ga0501070_0004223
348 Ga0501071_0007032
349 Ga0501071_0152519
350 Ga0501073_0001908
351 Ga0501074_0018434
352 Ga0501074_0018859
353 Ga0501223_006074
354 Ga0501235_000104
355 Ga0501221_001800
356 Ga0501234_004754
357 Ga0501080_0001296
358 Ga0501080_0004439
359 Ga0501241_001822
360 Ga0501268_002861
361 Ga0501035_0003962
362 Ga0501044_0004453
363 Ga0501044_0005189
364 nmdc:mga00v17_51426_c1
365 nmdc:mga0k408_3506_c1
366 nmdc:mga07m45_21060_c1
367 Ga0500642_0055459
368 Ga0500616_0083110
369 Ga0501084_0093627
370 Ga0501082_0030806
371 Ga0501082_0196436
372 Ga0466962_0037680
373 Ga0466962_0088764
374 2644250450
375 2644356023
376 2738842416
377 2739273163
378 2739342207

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01041

DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

58

387

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nu7-assembly1.cif.gz_A wbpe, an aminotransferase from pseudomonas aeruginosa involved in o-antigen assembly in complex with the cofactor pmp 0.9254 25 421
2oga-assembly1.cif.gz_A x-ray crystal structure of s. venezuelae desv in complex with ketimine intermediate 0.9248 26 424
3nys-assembly1.cif.gz_A x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas aeruginosa in complex with plp at 1.45 angstrom resolution 0.9247 25 420
7b0d-assembly1.cif.gz_B sugar transaminase from archaeoglobus veneficus 0.9186 25 427
3bn1-assembly2.cif.gz_C crystal structure of gdp-perosamine synthase 0.9174 19 424
ID Description Score Start End Superfamily
5u1zA01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9309 26 268 3.40.640.10
af_L0T6V0_4_199_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9292 13 219 3.40.640.10
af_L0T6V0_4_199_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9246 13 219 3.40.640.10
1b9iA01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9197 24 266 3.40.640.10
3bn1B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9184 15 268 3.40.640.10
ID Description Score Start End GO Terms
AF-X1S2V2-F1-model_v4 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.9872 95 233 GO:0000271
GO:0008483
GO:0030170
AF-A0A7C2G448-F1-model_v4 DegT/DnrJ/EryC1/StrS family aminotransferase 0.9854 97 213 GO:0000271
GO:0008483
GO:0030170
AF-A0A3D4E1S7-F1-model_v4 deleted 0.9822 92 205
AF-A0A382QA25-F1-model_v4 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.9821 57 178 GO:0000271
GO:0008483
GO:0030170
AF-A0A349NWH6-F1-model_v4 deleted 0.9817 95 221

Map