F288984

General Info

Members Datasets Scaffolds Average Seq Length
188 140 376 355

Family's Representative Sequence

Representative Sequence 3300005468|Ga0070707_100052711|Ga0070707_1000527111
Length 376
Sequence MRAVQRLQAKAQKFKENRRMSGKQIQVLVVDDSRVAQMLLINLLESDSQIRVIKAVDNGQAALDFLKFAKPDVVLMDIQMPRLDGFETTRRIMETQPLPIIICTATTDPREVATTFRALEAGAVACLGKPVGQEHPDHDPLARSLIETIKLMSEVKVVRRWPRSRFATAPPVTVNDTNGDGIKVIGIGASTGGPPILQTILSALPKDFPVPILVVQHIAHGFLLGLVEWLNETTGLHIHVAAHEAIPLPGHVYFAPDDLHMGITRTGRILLTRADVESNLRPAVSYLFRSLATTLGPNALGVLLTGMGKDGALELKQMKDGGAITIAQDRATSIVHGMPGEAIDLGGATHILPADKIGDSLITLVKRHQASEGIQP

Samples

Sample ID Description Type Environment
1 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
4 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
5 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
6 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
7 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
8 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
79 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
80 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
88 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
89 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
90 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
91 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
92 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
93 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
94 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
95 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
96 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
120 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
124 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
125 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
126 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
127 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
135 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
136 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
137 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
138 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
139 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
140 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.47
Metatranscriptomes 0
Isolates 0.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.64
Nodule 0
Rhizoplane 3.72
Rhizosphere 80.85
Stem 0
Stem Tuber 0
Unclassified 7.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070707_100052711 3300005468 Unclassified 3900
2 JGI25406J46586_10015035 3300003203 Bacteria 3273
3 Ga0055525_1000266 3300003759 Bacteria 49472
4 Ga0055527_1000044 3300003760 Bacteria 111829
5 Ga0055535_1000109 3300003761 Bacteria 89299
6 Ga0055542_1000108 3300003762 Bacteria 111829
7 Ga0055529_1000406 3300003763 Bacteria 45461
8 Ga0055530_10006709 3300003791 Bacteria 5050
9 Ga0070658_10006227 3300005327 Bacteria 9667
10 Ga0070658_10012795 3300005327 Bacteria 6731
11 Ga0070660_100087937 3300005339 Bacteria 2446
12 Ga0070667_100000068 3300005367 Bacteria 127663
13 Ga0070681_10004127 3300005458 Bacteria 13736
14 Ga0070681_10004867 3300005458 Bacteria 12884
15 Ga0070681_10245873 3300005458 Bacteria 1702
16 Ga0070698_100043755 3300005471 Unclassified 4589
17 Ga0070699_100008873 3300005518 Bacteria 8706
18 Ga0070679_100014107 3300005530 Bacteria 7662
19 Ga0070679_100022737 3300005530 Bacteria 6131
20 Ga0070697_100258797 3300005536 Bacteria 1489
21 Ga0068853_100069404 3300005539 Bacteria 3066
22 Ga0070686_100056282 3300005544 Bacteria 2522
23 Ga0070696_100002782 3300005546 Bacteria 11618
24 Ga0070665_100000358 3300005548 Bacteria 67995
25 Ga0070704_100096044 3300005549 Bacteria 2221
26 Ga0068855_100005555 3300005563 Bacteria 15387
27 Ga0068855_100021135 3300005563 Bacteria 7803
28 Ga0068856_100158966 3300005614 Bacteria 2270
29 Ga0068859_100007185 3300005617 Bacteria 11304
30 Ga0068858_100035883 3300005842 Bacteria 4598
31 Ga0068858_100070700 3300005842 Bacteria 3235
32 Ga0068862_100020201 3300005844 Bacteria 5562
33 Ga0081455_10002058 3300005937 Bacteria 24054
34 Ga0081538_10007275 3300005981 Bacteria 9594
35 Ga0081539_10000439 3300005985 Bacteria 88552
36 Ga0068871_100057414 3300006358 Bacteria 3166
37 Ga0075428_100018712 3300006844 Bacteria 7657
38 Ga0075430_100013824 3300006846 Bacteria 6877
39 Ga0075433_10082514 3300006852 Bacteria 2835
40 Ga0097620_100007185 3300006931 Bacteria 11304
41 Ga0105240_10001089 3300009093 Bacteria 47935
42 Ga0105240_10150715 3300009093 Unclassified 2770
43 Ga0105240_10170170 3300009093 Bacteria 2581
44 Ga0111539_10017388 3300009094 Bacteria 8900
45 Ga0111539_10238618 3300009094 Bacteria 2116
46 Ga0105247_10002734 3300009101 Bacteria 11820
47 Ga0114129_10107475 3300009147 Bacteria 3854
48 Ga0114129_10109456 3300009147 Bacteria 3814
49 Ga0114129_10124378 3300009147 Bacteria 3547
50 Ga0105237_10006593 3300009545 Bacteria 12836
51 Ga0105237_10325897 3300009545 Unclassified 1540
52 Ga0105238_10141132 3300009551 Bacteria 2386
53 Ga0105249_10019360 3300009553 Bacteria 6072
54 Ga0099796_10030953 3300010159 Bacteria 1741
55 Ga0105239_10054885 3300010375 Bacteria 4371
56 Ga0105239_10136567 3300010375 Bacteria 2730
57 Ga0105246_10002997 3300011119 Bacteria 10241
58 Ga0157374_10000047 3300013296 Bacteria 137075
59 Ga0163162_10048006 3300013306 Bacteria 4278
60 Ga0163162_10667227 3300013306 Unclassified 1163
61 Ga0163163_10019485 3300014325 Bacteria 6372
62 Ga0163163_10020939 3300014325 Bacteria 6166
63 Ga0157376_10000234 3300014969 Bacteria 38651
64 Ga0163161_10302732 3300017792 Bacteria 1259
65 Ga0209672_100024 3300025228 Bacteria 367869
66 Ga0209563_100067 3300025230 Bacteria 256096
67 Ga0209258_100047 3300025242 Bacteria 367869
68 Ga0209148_1000054 3300025254 Bacteria 367869
69 Ga0209455_1000052 3300025272 Bacteria 367804
70 Ga0209050_1000918 3300025298 Bacteria 38787
71 Ga0207705_10008230 3300025909 Bacteria 7626
72 Ga0207705_10044837 3300025909 Bacteria 3178
73 Ga0207707_10003600 3300025912 Bacteria 13738
74 Ga0207707_10003945 3300025912 Bacteria 13178
75 Ga0207695_10052823 3300025913 Bacteria 4254
76 Ga0207671_10006206 3300025914 Bacteria 10724
77 Ga0207652_10022330 3300025921 Bacteria 5234
78 Ga0207694_10369669 3300025924 Bacteria 1189
79 Ga0207706_10109913 3300025933 Bacteria 2425
80 Ga0207667_10066101 3300025949 Bacteria 3770
81 Ga0207667_10104140 3300025949 Bacteria 2927
82 Ga0207712_10032985 3300025961 Bacteria 3498
83 Ga0207658_10007712 3300025986 Bacteria 7330
84 Ga0207703_10011754 3300026035 Bacteria 6813
85 Ga0207703_10054790 3300026035 Bacteria 3244
86 Ga0207708_10011153 3300026075 Bacteria 6685
87 Ga0207675_100016443 3300026118 Bacteria 6909
88 Ga0265356_1002671 3300028017 Bacteria 2327
89 Ga0268266_10002729 3300028379 Bacteria 18500
90 Ga0268265_10403041 3300028380 Bacteria 1265
91 Ga0268264_10247504 3300028381 Unclassified 1654
92 Ga0307515_10006164 3300028794 Bacteria 24103
93 Ga0265338_10036467 3300028800 Bacteria 4705
94 Ga0265320_10005112 3300031240 Bacteria 8475
95 Ga0307513_10115324 3300031456 Bacteria 2669
96 Ga0307513_10241850 3300031456 Bacteria 1609
97 Ga0307516_10055467 3300031730 Bacteria 3867
98 Ga0316577_10166432 3300031733 Unclassified 1244
99 Ga0307413_10005365 3300031824 Bacteria 5714
100 Ga0307410_10009062 3300031852 Bacteria 5560
101 Ga0307406_10059609 3300031901 Unclassified 2458
102 Ga0307409_100141878 3300031995 Bacteria 2071
103 Ga0307411_10149164 3300032005 Bacteria 1735
104 Ga0316583_10006059 3300032133 Bacteria 4347
105 Ga0395900_0113878 3300037418 Bacteria 2776
106 Ga0395901_0055865 3300038443 Bacteria 4107
107 Ga0395901_0248762 3300038443 Bacteria 1853
108 Ga0400490_21201 3300038726 Unclassified 8706
109 Ga0400490_55929 3300038726 Bacteria 11801
110 Ga0400491_17432 3300038727 Unclassified 3058
111 Ga0451789_0741467 3300041443 Unclassified 964
112 Ga0451791_1331998 3300041451 Bacteria 3005
113 Ga0451833_1330601 3300041491 Bacteria 2054
114 Ga0439449_0000885 3300042007 Bacteria 11691
115 Ga0439462_0019070 3300042015 Bacteria 1783
116 Ga0466969_0044287 3300044656 Bacteria 2215
117 Ga0453684_0003354 3300044712 Bacteria 36261
118 Ga0453684_0004125 3300044712 Bacteria 31476
119 Ga0466959_0052044 3300045049 Bacteria 3000
120 Ga0451576_0425056 3300045051 Unclassified 1394
121 Ga0495616_0007728 3300046513 Bacteria 6425
122 Ga0495686_0032505 3300047472 Bacteria 3377
123 Ga0496108_0009917 3300048911 Bacteria 7722
124 Ga0496109_0136170 3300048912 Unclassified 2295
125 Ga0496110_0163090 3300048913 Bacteria 2021
126 Ga0496114_0014089 3300048917 Bacteria 6410
127 Ga0496115_0343300 3300048918 Unclassified 1218
128 Ga0501031_0002136 3300049568 Bacteria 12463
129 Ga0501031_0004667 3300049568 Bacteria 8897
130 Ga0501032_0011246 3300049569 Bacteria 6427
131 Ga0501032_0176567 3300049569 Bacteria 1399
132 Ga0501033_0000071 3300049570 Bacteria 97350
133 Ga0501033_0181904 3300049570 Bacteria 1506
134 Ga0501034_0002593 3300049571 Bacteria 21479
135 Ga0501034_0138419 3300049571 Bacteria 2415
136 Ga0501034_0214556 3300049571 Bacteria 1879
137 Ga0501036_0004583 3300049572 Bacteria 11164
138 Ga0501036_0009865 3300049572 Bacteria 7863
139 Ga0501036_0095022 3300049572 Bacteria 2520
140 Ga0501037_0007043 3300049573 Bacteria 8211
141 Ga0501037_0176836 3300049573 Bacteria 1515
142 Ga0501038_0000532 3300049574 Bacteria 33477
143 Ga0501038_0002472 3300049574 Bacteria 17191
144 Ga0501038_0146114 3300049574 Bacteria 1930
145 Ga0501039_0048514 3300049575 Bacteria 3282
146 Ga0501040_0001019 3300049576 Bacteria 17763
147 Ga0501042_0000980 3300049578 Bacteria 16148
148 Ga0501043_0002563 3300049579 Bacteria 15358
149 Ga0501043_0023639 3300049579 Bacteria 4820
150 Ga0501043_0025581 3300049579 Bacteria 4631
151 Ga0501046_0002472 3300049580 Bacteria 17320
152 Ga0501047_0001530 3300049581 Bacteria 22595
153 Ga0501047_0003847 3300049581 Bacteria 14115
154 Ga0501047_0011739 3300049581 Bacteria 8285
155 Ga0501047_0029853 3300049581 Bacteria 5255
156 Ga0501048_0011252 3300049582 Bacteria 6672
157 Ga0501068_0003288 3300049584 Bacteria 8664
158 Ga0501068_0039676 3300049584 Bacteria 2824
159 Ga0501068_0190180 3300049584 Bacteria 1300
160 Ga0501069_0003993 3300049585 Bacteria 7614
161 Ga0501070_0003068 3300049586 Bacteria 14542
162 Ga0501072_0123723 3300049588 Bacteria 2061
163 Ga0501073_0004406 3300049589 Bacteria 10579
164 Ga0501074_0001451 3300049590 Bacteria 15863
165 Ga0501079_0006537 3300049741 Bacteria 8762
166 Ga0501080_0241785 3300049742 Bacteria 1647
167 Ga0501083_0004100 3300049744 Bacteria 10256
168 Ga0501044_0000103 3300049823 Bacteria 103893
169 Ga0501044_0006570 3300049823 Bacteria 12840
170 Ga0501044_0054056 3300049823 Bacteria 4129
171 Ga0501044_0081184 3300049823 Bacteria 3283
172 Ga0501044_0249534 3300049823 Bacteria 1716
173 Ga0501044_0277286 3300049823 Bacteria 1611
174 Ga0501045_0004508 3300049824 Bacteria 9621
175 nmdc:mga05p37_118751_c1 3300050507 Bacteria 2019
176 nmdc:mga0qj67_9413_c1 3300050509 Bacteria 7268
177 nmdc:mga08y16_154614_c1 3300050511 Bacteria 2384
178 nmdc:mga08y16_27894_c1 3300050511 Bacteria 5953
179 nmdc:mga0a205_397387_c1 3300050515 Bacteria 1242
180 Ga0500643_035725 3300053087 Bacteria 1488
181 Ga0500641_0058824 3300053096 Bacteria 1597
182 Ga0500556_0000123 3300053104 Bacteria 67107
183 Ga0500595_008475 3300053119 Bacteria 4196
184 Ga0500616_0000018 3300053153 Bacteria 610976
185 Ga0500616_0002490 3300053153 Bacteria 15264
186 Ga0500616_0026938 3300053153 Bacteria 3177
187 Ga0500645_011899 3300053730 Unclassified 2827
188 2919706098 2919704043 Bacteria 5560311
189 Ga0070707_100052711
190 JGI25406J46586_10015035
191 Ga0055525_1000266
192 Ga0055527_1000044
193 Ga0055535_1000109
194 Ga0055542_1000108
195 Ga0055529_1000406
196 Ga0055530_10006709
197 Ga0070658_10006227
198 Ga0070658_10012795
199 Ga0070660_100087937
200 Ga0070667_100000068
201 Ga0070681_10004127
202 Ga0070681_10004867
203 Ga0070681_10245873
204 Ga0070698_100043755
205 Ga0070699_100008873
206 Ga0070679_100014107
207 Ga0070679_100022737
208 Ga0070697_100258797
209 Ga0068853_100069404
210 Ga0070686_100056282
211 Ga0070696_100002782
212 Ga0070665_100000358
213 Ga0070704_100096044
214 Ga0068855_100005555
215 Ga0068855_100021135
216 Ga0068856_100158966
217 Ga0068859_100007185
218 Ga0068858_100035883
219 Ga0068858_100070700
220 Ga0068862_100020201
221 Ga0081455_10002058
222 Ga0081538_10007275
223 Ga0081539_10000439
224 Ga0068871_100057414
225 Ga0075428_100018712
226 Ga0075430_100013824
227 Ga0075433_10082514
228 Ga0097620_100007185
229 Ga0105240_10001089
230 Ga0105240_10150715
231 Ga0105240_10170170
232 Ga0111539_10017388
233 Ga0111539_10238618
234 Ga0105247_10002734
235 Ga0114129_10107475
236 Ga0114129_10109456
237 Ga0114129_10124378
238 Ga0105237_10006593
239 Ga0105237_10325897
240 Ga0105238_10141132
241 Ga0105249_10019360
242 Ga0099796_10030953
243 Ga0105239_10054885
244 Ga0105239_10136567
245 Ga0105246_10002997
246 Ga0157374_10000047
247 Ga0163162_10048006
248 Ga0163162_10667227
249 Ga0163163_10019485
250 Ga0163163_10020939
251 Ga0157376_10000234
252 Ga0163161_10302732
253 Ga0209672_100024
254 Ga0209563_100067
255 Ga0209258_100047
256 Ga0209148_1000054
257 Ga0209455_1000052
258 Ga0209050_1000918
259 Ga0207705_10008230
260 Ga0207705_10044837
261 Ga0207707_10003600
262 Ga0207707_10003945
263 Ga0207695_10052823
264 Ga0207671_10006206
265 Ga0207652_10022330
266 Ga0207694_10369669
267 Ga0207706_10109913
268 Ga0207667_10066101
269 Ga0207667_10104140
270 Ga0207712_10032985
271 Ga0207658_10007712
272 Ga0207703_10011754
273 Ga0207703_10054790
274 Ga0207708_10011153
275 Ga0207675_100016443
276 Ga0265356_1002671
277 Ga0268266_10002729
278 Ga0268265_10403041
279 Ga0268264_10247504
280 Ga0307515_10006164
281 Ga0265338_10036467
282 Ga0265320_10005112
283 Ga0307513_10115324
284 Ga0307513_10241850
285 Ga0307516_10055467
286 Ga0316577_10166432
287 Ga0307413_10005365
288 Ga0307410_10009062
289 Ga0307406_10059609
290 Ga0307409_100141878
291 Ga0307411_10149164
292 Ga0316583_10006059
293 Ga0395900_0113878
294 Ga0395901_0055865
295 Ga0395901_0248762
296 Ga0400490_21201
297 Ga0400490_55929
298 Ga0400491_17432
299 Ga0451789_0741467
300 Ga0451791_1331998
301 Ga0451833_1330601
302 Ga0439449_0000885
303 Ga0439462_0019070
304 Ga0466969_0044287
305 Ga0453684_0003354
306 Ga0453684_0004125
307 Ga0466959_0052044
308 Ga0451576_0425056
309 Ga0495616_0007728
310 Ga0495686_0032505
311 Ga0496108_0009917
312 Ga0496109_0136170
313 Ga0496110_0163090
314 Ga0496114_0014089
315 Ga0496115_0343300
316 Ga0501031_0002136
317 Ga0501031_0004667
318 Ga0501032_0011246
319 Ga0501032_0176567
320 Ga0501033_0000071
321 Ga0501033_0181904
322 Ga0501034_0002593
323 Ga0501034_0138419
324 Ga0501034_0214556
325 Ga0501036_0004583
326 Ga0501036_0009865
327 Ga0501036_0095022
328 Ga0501037_0007043
329 Ga0501037_0176836
330 Ga0501038_0000532
331 Ga0501038_0002472
332 Ga0501038_0146114
333 Ga0501039_0048514
334 Ga0501040_0001019
335 Ga0501042_0000980
336 Ga0501043_0002563
337 Ga0501043_0023639
338 Ga0501043_0025581
339 Ga0501046_0002472
340 Ga0501047_0001530
341 Ga0501047_0003847
342 Ga0501047_0011739
343 Ga0501047_0029853
344 Ga0501048_0011252
345 Ga0501068_0003288
346 Ga0501068_0039676
347 Ga0501068_0190180
348 Ga0501069_0003993
349 Ga0501070_0003068
350 Ga0501072_0123723
351 Ga0501073_0004406
352 Ga0501074_0001451
353 Ga0501079_0006537
354 Ga0501080_0241785
355 Ga0501083_0004100
356 Ga0501044_0000103
357 Ga0501044_0006570
358 Ga0501044_0054056
359 Ga0501044_0081184
360 Ga0501044_0249534
361 Ga0501044_0277286
362 Ga0501045_0004508
363 nmdc:mga05p37_118751_c1
364 nmdc:mga0qj67_9413_c1
365 nmdc:mga08y16_154614_c1
366 nmdc:mga08y16_27894_c1
367 nmdc:mga0a205_397387_c1
368 Ga0500643_035725
369 Ga0500641_0058824
370 Ga0500556_0000123
371 Ga0500595_008475
372 Ga0500616_0000018
373 Ga0500616_0002490
374 Ga0500616_0026938
375 Ga0500645_011899
376 2919706098

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01339

CheB_methylest

CheB methylesterase

185

361

0.95

PF00072

Response_reg

Response regulator receiver domain

27

136

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3sft-assembly1.cif.gz_A crystal structure of thermotoga maritima cheb methylesterase catalytic domain 0.95 162 347
1chd-assembly1.cif.gz_A cheb methylesterase domain 0.9485 162 350
3sft-assembly1.cif.gz_A crystal structure of thermotoga maritima cheb methylesterase catalytic domain 0.9306 162 347
4qyw-assembly1.cif.gz_A structure of phosphono-chey from t.maritima 0.9245 1 129
3eul-assembly2.cif.gz_B structure of the signal receiver domain of the putative response regulator narl from mycobacterium tuberculosis 0.9208 2 133
ID Description Score Start End Superfamily
3c3wB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9621 1 79 3.40.50.2300
3sftA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylesterase CheB, C-terminal domain 0.95 162 347 3.40.50.180
af_P0AED5_2_210_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9417 2 130 3.40.50.2300
3sftA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylesterase CheB, C-terminal domain 0.9306 162 347 3.40.50.180
af_P9WMF9_2_208_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9301 2 130 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7Z9QTH3-F1-model_v4 protein-glutamate methylesterase (EC 3.1.1.61) 0.9833 162 348 GO:0000156
GO:0005737
GO:0006935
GO:0008984
AF-A0A847FKZ6-F1-model_v4 protein-glutamate methylesterase (EC 3.1.1.61) 0.9811 168 347 GO:0000156
GO:0005737
GO:0006935
GO:0008984
AF-A0A085L9R9-F1-model_v4 Stage 0 sporulation protein A homolog 0.9762 2 77 GO:0000160
AF-A0A356JYX0-F1-model_v4 protein-glutamate methylesterase (EC 3.1.1.61) 0.969 224 348 GO:0000156
GO:0005737
GO:0006935
GO:0008984
AF-A0A7Z9QTH3-F1-model_v4 protein-glutamate methylesterase (EC 3.1.1.61) 0.9679 162 348 GO:0000156
GO:0005737
GO:0006935
GO:0008984

Map