F282429

General Info

Members Datasets Scaffolds Average Seq Length
184 152 368 333

Family's Representative Sequence

Representative Sequence 3300007788|Ga0099795_10003963|Ga0099795_100039633
Length 398
Sequence MRHSMAVEVLRQCYGTDADPERRLPALSTYLGHTHLNYTYWYLHQNPSLMQQGGDTARALLGGLRMKPALPTFPALLQRFFTQRLMQQKRVSAHTIRSYRDTFRLLLRFAQKRLRTSPDRLAFEKIDAPFISAFLNELEKTRGVATRTRNLRLTAIRSFFRFAAYEMPTHGAQIQRVLAVPAKRFDRRLIDFMTRPEVDALLNAPNKSTWKGRRDHAVLLTTLQTGLRLSEVTGLNRRDVTFGTGAHVEVLGKGRKQRAIPLCKPVAAVLEAWLDETSAAQDGIVFPSMRGGRLSADAVERLLKKHVATASEACASLKKKHITFHCLRHTTAMDLLNAGVEQSVIALWLGHESIETTQIYLDADLALKEKILARTIPFDSKPGKFRPDDRLLTFLNQL

Samples

Sample ID Description Type Environment
1 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
37 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
38 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
39 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300022730 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU2 Metagenome Rhizosphere
42 3300022732 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 Metagenome Rhizosphere
43 3300022734 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU3 Metagenome Rhizosphere
44 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
45 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
46 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028010 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 Metagenome Rhizosphere
66 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
67 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
68 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
69 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
70 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
73 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
74 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
75 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
76 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
77 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
78 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
79 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
80 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
81 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
82 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
83 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
84 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
85 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
86 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
87 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
88 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
91 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
96 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
97 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
98 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
99 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
100 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
101 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
102 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
105 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
106 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
107 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
111 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
112 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
113 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
114 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
115 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
116 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
117 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
118 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
119 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
120 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
121 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
122 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
123 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
124 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
125 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
126 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
131 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
132 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
133 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
137 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
138 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
139 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
140 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
141 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
142 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
143 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
144 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
145 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
146 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
147 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
148 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
149 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
150 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
151 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
152 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.11
Metatranscriptomes 1.09
Isolates 3.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.8
Nodule 4.35
Rhizoplane 0.54
Rhizosphere 84.78
Stem 0
Stem Tuber 0
Unclassified 4.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099795_10003963 3300007788 Bacteria 3751
2 JGI24735J21928_10001893 3300002067 Bacteria 7343
3 rootH2_10058856 3300003320 Bacteria 4832
4 Ga0070680_100060751 3300005336 Bacteria 3093
5 Ga0070682_100133204 3300005337 Bacteria 1685
6 Ga0070691_10012224 3300005341 Bacteria 3930
7 Ga0070688_100055142 3300005365 Bacteria 2492
8 Ga0070667_100083684 3300005367 Bacteria 2734
9 Ga0070711_100030126 3300005439 Bacteria 3590
10 Ga0070681_10012092 3300005458 Bacteria 8558
11 Ga0070681_10056557 3300005458 Bacteria 3904
12 Ga0070679_100070065 3300005530 Bacteria 3498
13 Ga0070679_100186083 3300005530 Unclassified 2047
14 Ga0068855_100086076 3300005563 Bacteria 3635
15 Ga0068854_100026468 3300005578 Bacteria 3987
16 Ga0068856_100023679 3300005614 Bacteria 5970
17 Ga0068856_100404623 3300005614 Bacteria 1384
18 Ga0068859_100097748 3300005617 Bacteria 2989
19 Ga0068864_100181225 3300005618 Bacteria 1926
20 Ga0068863_100079261 3300005841 Bacteria 3111
21 Ga0081455_10071891 3300005937 Bacteria 2866
22 Ga0081539_10010735 3300005985 Bacteria 7381
23 Ga0070717_10051761 3300006028 Bacteria 3381
24 Ga0070712_100012257 3300006175 Bacteria 5450
25 Ga0070712_100170803 3300006175 Bacteria 1687
26 Ga0070712_100205504 3300006175 Bacteria 1550
27 Ga0075430_100012527 3300006846 Bacteria 7218
28 Ga0097620_100097748 3300006931 Bacteria 2989
29 Ga0075435_100365521 3300007076 Bacteria 1238
30 Ga0099794_10000071 3300007265 Bacteria 38266
31 Ga0099795_10004154 3300007788 Bacteria 3699
32 Ga0105240_10065454 3300009093 Bacteria 4512
33 Ga0105240_10090869 3300009093 Bacteria 3731
34 Ga0105238_10042132 3300009551 Bacteria 4623
35 Ga0105249_10246349 3300009553 Bacteria 1769
36 Ga0099796_10002043 3300010159 Plasmid 4305
37 Ga0099796_10040078 3300010159 Bacteria 1580
38 Ga0105239_10104666 3300010375 Bacteria 3133
39 Ga0157370_10019437 3300013104 Bacteria 6814
40 Ga0157369_10130259 3300013105 Unclassified 2666
41 Ga0163162_10135609 3300013306 Bacteria 2572
42 Ga0157372_10087067 3300013307 Bacteria 3544
43 Ga0163163_10434414 3300014325 Bacteria 1372
44 Ga0182008_10015560 3300014497 Bacteria 3966
45 Ga0214544_1000097 3300021320 Bacteria 116548
46 Ga0214542_1000418 3300021321 Bacteria 75807
47 Ga0214543_1019930 3300021327 Bacteria 5596
48 Ga0213876_10007199 3300021384 Bacteria 6064
49 Ga0224570_100606 3300022730 Bacteria 2856
50 Ga0224569_100638 3300022732 Bacteria 3006
51 Ga0224571_100009 3300022734 Bacteria 5711
52 Ga0224572_1012327 3300024225 Unclassified 1623
53 Ga0228598_1020487 3300024227 Bacteria 1302
54 Ga0207647_10017262 3300025904 Bacteria 4907
55 Ga0207684_10048957 3300025910 Bacteria 3585
56 Ga0207707_10054515 3300025912 Bacteria 3481
57 Ga0207707_10187440 3300025912 Bacteria 1805
58 Ga0207695_10075859 3300025913 Bacteria 3420
59 Ga0207693_10041516 3300025915 Bacteria 3621
60 Ga0207693_10065955 3300025915 Bacteria 2834
61 Ga0207663_10024054 3300025916 Bacteria 3505
62 Ga0207663_10065928 3300025916 Bacteria 2316
63 Ga0207660_10052393 3300025917 Bacteria 2905
64 Ga0207660_10086664 3300025917 Bacteria 2312
65 Ga0207652_10024554 3300025921 Bacteria 5002
66 Ga0207694_10027937 3300025924 Bacteria 4299
67 Ga0207670_10000696 3300025936 Bacteria 17765
68 Ga0207665_10021107 3300025939 Bacteria 4280
69 Ga0207679_10311745 3300025945 Unclassified 1360
70 Ga0207667_10086139 3300025949 Bacteria 3252
71 Ga0207640_10031504 3300025981 Bacteria 3277
72 Ga0207658_10259200 3300025986 Bacteria 1481
73 Ga0207702_10046105 3300026078 Bacteria 3668
74 Ga0207641_10074104 3300026088 Bacteria 2935
75 Ga0209179_1000518 3300027512 Plasmid 3975
76 Ga0209179_1001357 3300027512 Bacteria 2969
77 Ga0209588_1000155 3300027671 Bacteria 19577
78 Ga0209588_1026702 3300027671 Bacteria 1834
79 Ga0265358_100032 3300028010 Unclassified 1968
80 Ga0265356_1001822 3300028017 Bacteria 3008
81 Ga0265334_10008159 3300028573 Bacteria 4459
82 Ga0265318_10029726 3300028577 Bacteria 2129
83 Ga0265762_1003245 3300030760 Bacteria 2910
84 Ga0265762_1006062 3300030760 Bacteria 2167
85 Ga0265331_10003190 3300031250 Bacteria 10705
86 Ga0307509_10047726 3300031507 Unclassified 4605
87 Ga0316579_10098073 3300031691 Bacteria 1402
88 Ga0316576_10029546 3300031727 Bacteria 3876
89 Ga0316576_10029734 3300031727 Bacteria 3864
90 Ga0316578_10017689 3300031728 Bacteria 3885
91 Ga0316578_10022010 3300031728 Bacteria 3547
92 Ga0316577_10153284 3300031733 Bacteria 1299
93 Ga0307411_10027148 3300032005 Bacteria 3459
94 Ga0316585_10018179 3300032137 Bacteria 2131
95 Ga0316585_10037780 3300032137 Bacteria 1533
96 Ga0316214_1001626 3300033545 Bacteria 2655
97 Ga0373934_0008781 3300035086 Bacteria 3774
98 Ga0373923_0060956 3300035111 Bacteria 1602
99 Ga0373936_0045179 3300035113 Bacteria 1774
100 Ga0373953_0008755 3300035117 Bacteria 3449
101 Ga0373954_0009954 3300035118 Bacteria 4187
102 Ga0373954_0163218 3300035118 Bacteria 1090
103 Ga0373956_0010398 3300035119 Bacteria 3814
104 Ga0373957_0005584 3300035120 Bacteria 3906
105 Ga0373943_0064039 3300035170 Bacteria 1845
106 Ga0373955_0003877 3300035172 Bacteria 6596
107 Ga0316574_0038440 3300035398 Bacteria 2938
108 Ga0316574_0064944 3300035398 Bacteria 2297
109 Ga0373927_0003932 3300035695 Bacteria 10536
110 Ga0373933_0018615 3300035724 Bacteria 3908
111 Ga0373947_0229175 3300035725 Bacteria 1223
112 Ga0373937_0015722 3300036401 Bacteria 6701
113 Ga0373937_0067854 3300036401 Bacteria 3287
114 Ga0316582_0040429 3300036647 Bacteria 2910
115 Ga0316582_0048980 3300036647 Bacteria 2673
116 Ga0316584_0029133 3300036712 Bacteria 4075
117 Ga0316584_0041629 3300036712 Bacteria 3424
118 Ga0400490_20132 3300038726 Bacteria 6813
119 Ga0400491_10790 3300038727 Bacteria 1792
120 Ga0400488_04713 3300038741 Plasmid 3788
121 Ga0400487_44797 3300039110 Plasmid 3605
122 Ga0400487_54983 3300039110 Bacteria 1624
123 Ga0436365_0244311 3300039437 Unclassified 2110
124 Ga0436365_0262167 3300039437 Bacteria 3690
125 Ga0436362_0058123 3300039453 Unclassified 1217
126 Ga0450898_001932 3300042134 Bacteria 2823
127 Ga0451577_0303813 3300042876 Bacteria 1446
128 Ga0466969_0008826 3300044656 Bacteria 5345
129 Ga0495592_0033977 3300046454 Bacteria 3846
130 Ga0495592_0129506 3300046454 Bacteria 1766
131 Ga0495603_0063227 3300046455 Bacteria 2183
132 Ga0495651_0100279 3300046462 Bacteria 2157
133 Ga0495583_0117342 3300046506 Bacteria 1123
134 Ga0495628_0041892 3300046516 Bacteria 3653
135 Ga0495628_0101927 3300046516 Bacteria 2215
136 Ga0495630_0043537 3300046517 Bacteria 3354
137 Ga0495630_0104851 3300046517 Bacteria 2140
138 Ga0495652_0048462 3300046529 Bacteria 3640
139 Ga0495652_0186641 3300046529 Bacteria 1586
140 Ga0495665_0034452 3300046531 Bacteria 2707
141 Ga0495586_0017263 3300046535 Bacteria 3836
142 Ga0495667_0032427 3300046559 Bacteria 3501
143 Ga0495634_0123792 3300046642 Bacteria 1654
144 Ga0495611_0014009 3300046648 Plasmid 3421
145 Ga0495625_0166740 3300046660 Bacteria 1472
146 Ga0495599_0141800 3300046678 Bacteria 1491
147 Ga0495623_0025058 3300046679 Bacteria 3843
148 Ga0495624_0028413 3300046690 Bacteria 3655
149 Ga0495581_0044046 3300047315 Bacteria 2581
150 Ga0495581_0067432 3300047315 Bacteria 2069
151 Ga0495604_0039762 3300047317 Bacteria 3695
152 Ga0495674_0008417 3300047319 Bacteria 9827
153 Ga0495674_0051129 3300047319 Bacteria 3643
154 Ga0495675_0079487 3300047444 Bacteria 2065
155 Ga0495679_034343 3300047446 Bacteria 1615
156 Ga0495602_0149812 3300048088 Bacteria 1835
157 Ga0495614_0025802 3300048089 Bacteria 2534
158 Ga0496112_0057635 3300048915 Bacteria 3825
159 Ga0501036_0097098 3300049572 Bacteria 2491
160 Ga0501047_0056419 3300049581 Bacteria 3798
161 Ga0501073_0032411 3300049589 Bacteria 3725
162 Ga0501223_010430 3300049663 Bacteria 1870
163 Ga0501079_0141055 3300049741 Bacteria 1877
164 Ga0501083_0007051 3300049744 Bacteria 7981
165 Ga0501035_0052731 3300049822 Bacteria 3639
166 Ga0501044_0059159 3300049823 Bacteria 3927
167 nmdc:mga07m45_13202_c1 3300050496 Bacteria 4377
168 nmdc:mga0qj67_49986_c1 3300050509 Bacteria 3305
169 nmdc:mga0rr50_286788_c1 3300050513 Bacteria 1375
170 Ga0500644_0001710 3300053088 Bacteria 5715
171 Ga0500583_0001394 3300053092 Bacteria 6922
172 Ga0500651_0163421 3300053093 Bacteria 1330
173 Ga0500595_014023 3300053119 Bacteria 3053
174 Ga0500655_000008 3300053133 Bacteria 67575
175 Ga0500645_005366 3300053730 Bacteria 4735
176 Ga0501082_0014615 3300060353 Bacteria 6761
177 Ga0501082_0226831 3300060353 Bacteria 1626
178 2512351891 2512047030 Bacteria 9031815
179 2513559217 2513237082 Bacteria 8640282
180 2513883492 2513237140 Bacteria 7076289
181 2808989851 2808606387 Bacteria 5697198
182 2902689413 2902682994 Bacteria 8951596
183 2935684670 2935675223 Bacteria 9928132
184 8016590380 8016583857 Bacteria 10421953
185 Ga0099795_10003963
186 JGI24735J21928_10001893
187 rootH2_10058856
188 Ga0070680_100060751
189 Ga0070682_100133204
190 Ga0070691_10012224
191 Ga0070688_100055142
192 Ga0070667_100083684
193 Ga0070711_100030126
194 Ga0070681_10012092
195 Ga0070681_10056557
196 Ga0070679_100070065
197 Ga0070679_100186083
198 Ga0068855_100086076
199 Ga0068854_100026468
200 Ga0068856_100023679
201 Ga0068856_100404623
202 Ga0068859_100097748
203 Ga0068864_100181225
204 Ga0068863_100079261
205 Ga0081455_10071891
206 Ga0081539_10010735
207 Ga0070717_10051761
208 Ga0070712_100012257
209 Ga0070712_100170803
210 Ga0070712_100205504
211 Ga0075430_100012527
212 Ga0097620_100097748
213 Ga0075435_100365521
214 Ga0099794_10000071
215 Ga0099795_10004154
216 Ga0105240_10065454
217 Ga0105240_10090869
218 Ga0105238_10042132
219 Ga0105249_10246349
220 Ga0099796_10002043
221 Ga0099796_10040078
222 Ga0105239_10104666
223 Ga0157370_10019437
224 Ga0157369_10130259
225 Ga0163162_10135609
226 Ga0157372_10087067
227 Ga0163163_10434414
228 Ga0182008_10015560
229 Ga0214544_1000097
230 Ga0214542_1000418
231 Ga0214543_1019930
232 Ga0213876_10007199
233 Ga0224570_100606
234 Ga0224569_100638
235 Ga0224571_100009
236 Ga0224572_1012327
237 Ga0228598_1020487
238 Ga0207647_10017262
239 Ga0207684_10048957
240 Ga0207707_10054515
241 Ga0207707_10187440
242 Ga0207695_10075859
243 Ga0207693_10041516
244 Ga0207693_10065955
245 Ga0207663_10024054
246 Ga0207663_10065928
247 Ga0207660_10052393
248 Ga0207660_10086664
249 Ga0207652_10024554
250 Ga0207694_10027937
251 Ga0207670_10000696
252 Ga0207665_10021107
253 Ga0207679_10311745
254 Ga0207667_10086139
255 Ga0207640_10031504
256 Ga0207658_10259200
257 Ga0207702_10046105
258 Ga0207641_10074104
259 Ga0209179_1000518
260 Ga0209179_1001357
261 Ga0209588_1000155
262 Ga0209588_1026702
263 Ga0265358_100032
264 Ga0265356_1001822
265 Ga0265334_10008159
266 Ga0265318_10029726
267 Ga0265762_1003245
268 Ga0265762_1006062
269 Ga0265331_10003190
270 Ga0307509_10047726
271 Ga0316579_10098073
272 Ga0316576_10029546
273 Ga0316576_10029734
274 Ga0316578_10017689
275 Ga0316578_10022010
276 Ga0316577_10153284
277 Ga0307411_10027148
278 Ga0316585_10018179
279 Ga0316585_10037780
280 Ga0316214_1001626
281 Ga0373934_0008781
282 Ga0373923_0060956
283 Ga0373936_0045179
284 Ga0373953_0008755
285 Ga0373954_0009954
286 Ga0373954_0163218
287 Ga0373956_0010398
288 Ga0373957_0005584
289 Ga0373943_0064039
290 Ga0373955_0003877
291 Ga0316574_0038440
292 Ga0316574_0064944
293 Ga0373927_0003932
294 Ga0373933_0018615
295 Ga0373947_0229175
296 Ga0373937_0015722
297 Ga0373937_0067854
298 Ga0316582_0040429
299 Ga0316582_0048980
300 Ga0316584_0029133
301 Ga0316584_0041629
302 Ga0400490_20132
303 Ga0400491_10790
304 Ga0400488_04713
305 Ga0400487_44797
306 Ga0400487_54983
307 Ga0436365_0244311
308 Ga0436365_0262167
309 Ga0436362_0058123
310 Ga0450898_001932
311 Ga0451577_0303813
312 Ga0466969_0008826
313 Ga0495592_0033977
314 Ga0495592_0129506
315 Ga0495603_0063227
316 Ga0495651_0100279
317 Ga0495583_0117342
318 Ga0495628_0041892
319 Ga0495628_0101927
320 Ga0495630_0043537
321 Ga0495630_0104851
322 Ga0495652_0048462
323 Ga0495652_0186641
324 Ga0495665_0034452
325 Ga0495586_0017263
326 Ga0495667_0032427
327 Ga0495634_0123792
328 Ga0495611_0014009
329 Ga0495625_0166740
330 Ga0495599_0141800
331 Ga0495623_0025058
332 Ga0495624_0028413
333 Ga0495581_0044046
334 Ga0495581_0067432
335 Ga0495604_0039762
336 Ga0495674_0008417
337 Ga0495674_0051129
338 Ga0495675_0079487
339 Ga0495679_034343
340 Ga0495602_0149812
341 Ga0495614_0025802
342 Ga0496112_0057635
343 Ga0501036_0097098
344 Ga0501047_0056419
345 Ga0501073_0032411
346 Ga0501223_010430
347 Ga0501079_0141055
348 Ga0501083_0007051
349 Ga0501035_0052731
350 Ga0501044_0059159
351 nmdc:mga07m45_13202_c1
352 nmdc:mga0qj67_49986_c1
353 nmdc:mga0rr50_286788_c1
354 Ga0500644_0001710
355 Ga0500583_0001394
356 Ga0500651_0163421
357 Ga0500595_014023
358 Ga0500655_000008
359 Ga0500645_005366
360 Ga0501082_0014615
361 Ga0501082_0226831
362 2512351891
363 2513559217
364 2513883492
365 2808989851
366 2902689413
367 2935684670
368 8016590380

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

191

366

0.94

PF13495

Phage_int_SAM_4

Phage integrase, N-terminal SAM-like domain

76

167

0.9

PF02899

Phage_int_SAM_1

Phage integrase, N-terminal SAM-like domain

78

167

0.89

PF13102

Phage_int_SAM_5

Phage integrase SAM-like domain

76

169

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dor-assembly2.cif.gz_D p2 integrase catalytic domain in space group p21 0.822 126 297
5dor-assembly1.cif.gz_A p2 integrase catalytic domain in space group p21 0.8189 125 297
5dor-assembly2.cif.gz_C p2 integrase catalytic domain in space group p21 0.8179 126 297
5c6k-assembly1.cif.gz_A bacteriophage p2 integrase catalytic domain 0.7755 126 297
5dor-assembly1.cif.gz_B p2 integrase catalytic domain in space group p21 0.7519 126 309
ID Description Score Start End Superfamily
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8912 125 306 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8817 125 306 1.10.443.10
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.875 128 303 1.10.443.10
af_P9WF33_119_304_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8643 125 305 1.10.443.10
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8561 128 303 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A5S4VSY3-F1-model_v4 Integrase 0.9845 1 120 GO:0003677
GO:0015074
AF-A0A843S6I4-F1-model_v4 Integrase 0.9827 7 118 GO:0003677
GO:0015074
AF-A0A7X8GKJ6-F1-model_v4 Site-specific integrase 0.9811 7 122 GO:0003677
GO:0015074
AF-A0A5S4VSY3-F1-model_v4 Integrase 0.9764 1 120 GO:0003677
GO:0015074
AF-A0A7W0Q968-F1-model_v4 Site-specific integrase 0.9761 6 122 GO:0003677
GO:0015074

Map