F279616

General Info

Members Datasets Scaffolds Average Seq Length
182 137 364 351

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0346731|Ga0453684_0346731_214_1332
Length 372
Sequence LPQPLFDAPPESLCVLRLSALGDVCHALPVVRTIQDAWPRTRITWIIGKLEHKLLGHLPDVEFVVFDKKAGRSAYADLRARLRGRRFDALLHMQLALRASLAAALVPARWKVGFDRDRAREGQWLFTNAKIEPRSREHVLDGLFGFARRLGIESRSLRWDIPLPDGALEYARRAVPDAAPGTLVVSPCSSHALRNWRAERYAALADHAVRRHGLQVLLCGGRSPLELQYGQEIERLMREPCRNLIGQDTLVEFLATLQRATVLVSPDSGPAHMATTVGTPVLGLYAATNPQRSGPYCSRQWCVDRYEVAASRFMNRSASRLPWTEKIEQPGVMDLIEVDDAIEKLDQLMLAGAPRTLPAQPRPTPAPGSVLL

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
38 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
65 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
77 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
78 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
83 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
84 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
89 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
92 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
110 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
111 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
112 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
113 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
114 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
115 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
118 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
125 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
126 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
127 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
128 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
129 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
130 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
131 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
132 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
133 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
134 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
137 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.45
Metatranscriptomes 0.55
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.59
Nodule 0
Rhizoplane 2.2
Rhizosphere 89.01
Stem 0
Stem Tuber 0
Unclassified 8.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0346731 3300044712 Bacteria 1675
2 JGI25406J46586_10010137 3300003203 Bacteria 4192
3 Ga0065707_10081916 3300005295 Bacteria 29636
4 Ga0070680_100028917 3300005336 Bacteria 4449
5 Ga0070680_100064884 3300005336 Bacteria 2993
6 Ga0070668_100014184 3300005347 Bacteria 5952
7 Ga0070674_100023916 3300005356 Bacteria 3961
8 Ga0070667_100000422 3300005367 Bacteria 45020
9 Ga0070713_100012193 3300005436 Bacteria 6296
10 Ga0070713_100143813 3300005436 Bacteria 2115
11 Ga0070700_100017279 3300005441 Bacteria 4120
12 Ga0070662_100011131 3300005457 Bacteria 5925
13 Ga0068867_100007280 3300005459 Bacteria 7829
14 Ga0070672_100050670 3300005543 Bacteria 3235
15 Ga0070695_100065405 3300005545 Bacteria 2368
16 Ga0070665_100005154 3300005548 Bacteria 13526
17 Ga0070665_100012682 3300005548 Bacteria 8488
18 Ga0070704_100132194 3300005549 Unclassified 1936
19 Ga0068855_100003295 3300005563 Bacteria 19776
20 Ga0068856_100349127 3300005614 Bacteria 1498
21 Ga0068861_100015360 3300005719 Bacteria 5394
22 Ga0068862_100014699 3300005844 Bacteria 6502
23 Ga0068862_100210930 3300005844 Bacteria 1755
24 Ga0081455_10000098 3300005937 Bacteria 95177
25 Ga0081539_10000006 3300005985 Bacteria 534555
26 Ga0097621_100154982 3300006237 Bacteria 1966
27 Ga0068871_100060969 3300006358 Unclassified 3079
28 Ga0075428_100002895 3300006844 Bacteria 18673
29 Ga0075428_100307990 3300006844 Bacteria 1702
30 Ga0075430_100008062 3300006846 Bacteria 8902
31 Ga0075435_100229630 3300007076 Bacteria 1577
32 Ga0105240_10063221 3300009093 Bacteria 4605
33 Ga0111539_10130785 3300009094 Bacteria 2939
34 Ga0111539_10274422 3300009094 Bacteria 1962
35 Ga0105247_10003451 3300009101 Bacteria 10303
36 Ga0105248_10167979 3300009177 Bacteria 2473
37 Ga0105237_10078849 3300009545 Unclassified 3283
38 Ga0099796_10007269 3300010159 Bacteria 2887
39 Ga0105239_10033174 3300010375 Bacteria 5670
40 Ga0163163_10016370 3300014325 Bacteria 6887
41 Ga0163163_10507367 3300014325 Bacteria 1268
42 Ga0157380_10023885 3300014326 Bacteria 4618
43 Ga0157379_10073458 3300014968 Bacteria 3061
44 Ga0157379_10278859 3300014968 Bacteria 1521
45 Ga0213871_10010983 3300021441 Bacteria 2069
46 Ga0207710_10002359 3300025900 Bacteria 8824
47 Ga0207680_10034550 3300025903 Bacteria 2894
48 Ga0207699_10022737 3300025906 Bacteria 3403
49 Ga0207645_10001743 3300025907 Bacteria 17646
50 Ga0207695_10011760 3300025913 Bacteria 10573
51 Ga0207695_10046271 3300025913 Bacteria 4612
52 Ga0207660_10050483 3300025917 Bacteria 2954
53 Ga0207681_10072370 3300025923 Bacteria 2407
54 Ga0207700_10059331 3300025928 Bacteria 2893
55 Ga0207700_10087953 3300025928 Bacteria 2444
56 Ga0207706_10003859 3300025933 Bacteria 14275
57 Ga0207686_10257860 3300025934 Archaea 1277
58 Ga0207669_10027601 3300025937 Bacteria 3111
59 Ga0207691_10002444 3300025940 Bacteria 18164
60 Ga0207689_10176808 3300025942 Bacteria 1760
61 Ga0207667_10003028 3300025949 Bacteria 20860
62 Ga0207667_10143400 3300025949 Unclassified 2459
63 Ga0207667_10306608 3300025949 Bacteria 1622
64 Ga0207712_10065098 3300025961 Unclassified 2600
65 Ga0207658_10000097 3300025986 Bacteria 97223
66 Ga0207658_10173214 3300025986 Unclassified 1780
67 Ga0207708_10063823 3300026075 Bacteria 2814
68 Ga0207702_10182652 3300026078 Bacteria 1933
69 Ga0207648_10001614 3300026089 Bacteria 24716
70 Ga0207675_100000712 3300026118 Bacteria 32952
71 Ga0207675_100127840 3300026118 Unclassified 2408
72 Ga0209971_1009259 3300027682 Bacteria 2333
73 Ga0209998_10000241 3300027717 Bacteria 18179
74 Ga0209974_10000483 3300027876 Bacteria 13279
75 Ga0207428_10084436 3300027907 Bacteria 2475
76 Ga0268266_10000228 3300028379 Bacteria 97214
77 Ga0268266_10007670 3300028379 Bacteria 9695
78 Ga0268266_10011000 3300028379 Bacteria 7874
79 Ga0268266_10014585 3300028379 Bacteria 6753
80 Ga0268265_10094739 3300028380 Bacteria 2395
81 Ga0268265_10209691 3300028380 Unclassified 1697
82 Ga0307511_10013354 3300030521 Bacteria 8025
83 Ga0265770_1003889 3300030878 Unclassified 2033
84 Ga0265340_10006674 3300031247 Bacteria 6323
85 Ga0265339_10058920 3300031249 Unclassified 2072
86 Ga0307509_10064023 3300031507 Bacteria 3870
87 Ga0265313_10026688 3300031595 Bacteria 3037
88 Ga0316576_10018935 3300031727 Bacteria 4710
89 Ga0307405_10068242 3300031731 Bacteria 2275
90 Ga0307410_10126610 3300031852 Bacteria 1871
91 Ga0307411_10166596 3300032005 Unclassified 1657
92 Ga0373936_0001741 3300035113 Bacteria 7988
93 Ga0395898_0009737 3300037466 Bacteria 10077
94 Ga0436360_1165473 3300039438 Bacteria 9759
95 Ga0436361_0895908 3300039447 Bacteria 3213
96 Ga0451577_0041744 3300042876 Bacteria 4117
97 Ga0451577_0058628 3300042876 Bacteria 3432
98 Ga0451577_0103780 3300042876 Bacteria 2541
99 Ga0451577_0150831 3300042876 Bacteria 2091
100 Ga0466972_0027995 3300044658 Bacteria 2784
101 Ga0466966_0003069 3300044684 Bacteria 11012
102 Ga0466966_0028228 3300044684 Unclassified 3657
103 Ga0466966_0092700 3300044684 Bacteria 1874
104 Ga0466961_0024985 3300044693 Bacteria 3844
105 Ga0466964_0004173 3300044706 Bacteria 5317
106 Ga0453684_0059848 3300044712 Bacteria 4905
107 Ga0453684_0072709 3300044712 Bacteria 4339
108 Ga0466971_0000676 3300044719 Bacteria 13605
109 Ga0466970_0017376 3300044765 Bacteria 3717
110 Ga0466957_0035593 3300044842 Bacteria 2988
111 Ga0466959_0014144 3300045049 Bacteria 5792
112 Ga0466959_0018605 3300045049 Bacteria 5102
113 Ga0466959_0023833 3300045049 Bacteria 4531
114 Ga0451576_0014745 3300045051 Bacteria 8687
115 Ga0451576_0084137 3300045051 Bacteria 3309
116 Ga0495632_0040022 3300046519 Bacteria 2363
117 Ga0495671_0059527 3300046692 Bacteria 1887
118 Ga0496101_0314559 3300048904 Bacteria 1228
119 Ga0496104_0070088 3300048907 Bacteria 3333
120 Ga0496106_0052059 3300048909 Bacteria 3088
121 Ga0496115_0139336 3300048918 Bacteria 2001
122 Ga0496118_0035783 3300048921 Bacteria 4025
123 Ga0496126_0003544 3300048929 Bacteria 19629
124 Ga0501031_0054836 3300049568 Bacteria 2597
125 Ga0501032_0218480 3300049569 Bacteria 1241
126 Ga0501034_0190040 3300049571 Bacteria 2016
127 Ga0501036_0019988 3300049572 Bacteria 5622
128 Ga0501037_0003806 3300049573 Bacteria 10947
129 Ga0501037_0074232 3300049573 Bacteria 2472
130 Ga0501038_0068924 3300049574 Bacteria 3006
131 Ga0501039_0003932 3300049575 Bacteria 11168
132 Ga0501039_0040431 3300049575 Bacteria 3600
133 Ga0501040_0003593 3300049576 Bacteria 10027
134 Ga0501040_0030971 3300049576 Bacteria 3615
135 Ga0501041_0004135 3300049577 Bacteria 8394
136 Ga0501041_0113681 3300049577 Bacteria 1680
137 Ga0501042_0006414 3300049578 Bacteria 7630
138 Ga0501042_0012616 3300049578 Bacteria 5731
139 Ga0501042_0137750 3300049578 Bacteria 1759
140 Ga0501043_0010120 3300049579 Bacteria 7394
141 Ga0501046_0027759 3300049580 Bacteria 4615
142 Ga0501046_0079171 3300049580 Bacteria 2541
143 Ga0501048_0082808 3300049582 Bacteria 2263
144 Ga0501071_0024763 3300049587 Bacteria 4198
145 Ga0501072_0021326 3300049588 Bacteria 5025
146 Ga0501072_0067258 3300049588 Bacteria 2827
147 Ga0501072_0216893 3300049588 Unclassified 1525
148 Ga0501073_0025567 3300049589 Bacteria 4232
149 Ga0501075_0002497 3300049591 Bacteria 12252
150 Ga0501075_0004440 3300049591 Bacteria 9491
151 Ga0501076_0002131 3300049592 Bacteria 13585
152 Ga0501076_0392109 3300049592 Unclassified 1141
153 Ga0501077_0010232 3300049593 Bacteria 5841
154 Ga0501079_0004681 3300049741 Bacteria 10134
155 Ga0501079_0008832 3300049741 Bacteria 7630
156 Ga0501080_0018160 3300049742 Bacteria 6510
157 Ga0501080_0141798 3300049742 Bacteria 2221
158 Ga0501081_0000696 3300049743 Bacteria 19414
159 Ga0501081_0023358 3300049743 Bacteria 4143
160 Ga0501083_0073240 3300049744 Bacteria 2277
161 Ga0501035_0020691 3300049822 Bacteria 6047
162 Ga0501045_0083298 3300049824 Bacteria 2359
163 nmdc:mga0k408_119927_c1 3300050493 Bacteria 1557
164 nmdc:mga0qj67_91729_c1 3300050509 Bacteria 2442
165 nmdc:mga08y16_143778_c1 3300050511 Bacteria 2479
166 nmdc:mga0rr50_168405_c1 3300050513 Bacteria 1783
167 Ga0500641_0043152 3300053096 Bacteria 1830
168 Ga0500556_0000617 3300053104 Bacteria 22607
169 Ga0500559_0021728 3300053136 Bacteria 2721
170 Ga0500588_0008966 3300053146 Bacteria 2359
171 Ga0500590_108642 3300053148 Bacteria 1320
172 Ga0500616_0000064 3300053153 Bacteria 243072
173 Ga0500616_0007948 3300053153 Bacteria 6662
174 Ga0500630_102427 3300053159 Bacteria 1302
175 Ga0500633_0040474 3300053160 Bacteria 1564
176 Ga0500637_0106762 3300053178 Bacteria 1624
177 Ga0500637_0176264 3300053178 Bacteria 1227
178 Ga0501084_0028181 3300054114 Bacteria 4693
179 Ga0501084_0152609 3300054114 Unclassified 1947
180 Ga0501082_0000754 3300060353 Bacteria 28420
181 Ga0466962_0002561 3300061719 Bacteria 8634
182 Ga0530510_0022959 3300061734 Bacteria 4445
183 Ga0453684_0346731
184 JGI25406J46586_10010137
185 Ga0065707_10081916
186 Ga0070680_100028917
187 Ga0070680_100064884
188 Ga0070668_100014184
189 Ga0070674_100023916
190 Ga0070667_100000422
191 Ga0070713_100012193
192 Ga0070713_100143813
193 Ga0070700_100017279
194 Ga0070662_100011131
195 Ga0068867_100007280
196 Ga0070672_100050670
197 Ga0070695_100065405
198 Ga0070665_100005154
199 Ga0070665_100012682
200 Ga0070704_100132194
201 Ga0068855_100003295
202 Ga0068856_100349127
203 Ga0068861_100015360
204 Ga0068862_100014699
205 Ga0068862_100210930
206 Ga0081455_10000098
207 Ga0081539_10000006
208 Ga0097621_100154982
209 Ga0068871_100060969
210 Ga0075428_100002895
211 Ga0075428_100307990
212 Ga0075430_100008062
213 Ga0075435_100229630
214 Ga0105240_10063221
215 Ga0111539_10130785
216 Ga0111539_10274422
217 Ga0105247_10003451
218 Ga0105248_10167979
219 Ga0105237_10078849
220 Ga0099796_10007269
221 Ga0105239_10033174
222 Ga0163163_10016370
223 Ga0163163_10507367
224 Ga0157380_10023885
225 Ga0157379_10073458
226 Ga0157379_10278859
227 Ga0213871_10010983
228 Ga0207710_10002359
229 Ga0207680_10034550
230 Ga0207699_10022737
231 Ga0207645_10001743
232 Ga0207695_10011760
233 Ga0207695_10046271
234 Ga0207660_10050483
235 Ga0207681_10072370
236 Ga0207700_10059331
237 Ga0207700_10087953
238 Ga0207706_10003859
239 Ga0207686_10257860
240 Ga0207669_10027601
241 Ga0207691_10002444
242 Ga0207689_10176808
243 Ga0207667_10003028
244 Ga0207667_10143400
245 Ga0207667_10306608
246 Ga0207712_10065098
247 Ga0207658_10000097
248 Ga0207658_10173214
249 Ga0207708_10063823
250 Ga0207702_10182652
251 Ga0207648_10001614
252 Ga0207675_100000712
253 Ga0207675_100127840
254 Ga0209971_1009259
255 Ga0209998_10000241
256 Ga0209974_10000483
257 Ga0207428_10084436
258 Ga0268266_10000228
259 Ga0268266_10007670
260 Ga0268266_10011000
261 Ga0268266_10014585
262 Ga0268265_10094739
263 Ga0268265_10209691
264 Ga0307511_10013354
265 Ga0265770_1003889
266 Ga0265340_10006674
267 Ga0265339_10058920
268 Ga0307509_10064023
269 Ga0265313_10026688
270 Ga0316576_10018935
271 Ga0307405_10068242
272 Ga0307410_10126610
273 Ga0307411_10166596
274 Ga0373936_0001741
275 Ga0395898_0009737
276 Ga0436360_1165473
277 Ga0436361_0895908
278 Ga0451577_0041744
279 Ga0451577_0058628
280 Ga0451577_0103780
281 Ga0451577_0150831
282 Ga0466972_0027995
283 Ga0466966_0003069
284 Ga0466966_0028228
285 Ga0466966_0092700
286 Ga0466961_0024985
287 Ga0466964_0004173
288 Ga0453684_0059848
289 Ga0453684_0072709
290 Ga0466971_0000676
291 Ga0466970_0017376
292 Ga0466957_0035593
293 Ga0466959_0014144
294 Ga0466959_0018605
295 Ga0466959_0023833
296 Ga0451576_0014745
297 Ga0451576_0084137
298 Ga0495632_0040022
299 Ga0495671_0059527
300 Ga0496101_0314559
301 Ga0496104_0070088
302 Ga0496106_0052059
303 Ga0496115_0139336
304 Ga0496118_0035783
305 Ga0496126_0003544
306 Ga0501031_0054836
307 Ga0501032_0218480
308 Ga0501034_0190040
309 Ga0501036_0019988
310 Ga0501037_0003806
311 Ga0501037_0074232
312 Ga0501038_0068924
313 Ga0501039_0003932
314 Ga0501039_0040431
315 Ga0501040_0003593
316 Ga0501040_0030971
317 Ga0501041_0004135
318 Ga0501041_0113681
319 Ga0501042_0006414
320 Ga0501042_0012616
321 Ga0501042_0137750
322 Ga0501043_0010120
323 Ga0501046_0027759
324 Ga0501046_0079171
325 Ga0501048_0082808
326 Ga0501071_0024763
327 Ga0501072_0021326
328 Ga0501072_0067258
329 Ga0501072_0216893
330 Ga0501073_0025567
331 Ga0501075_0002497
332 Ga0501075_0004440
333 Ga0501076_0002131
334 Ga0501076_0392109
335 Ga0501077_0010232
336 Ga0501079_0004681
337 Ga0501079_0008832
338 Ga0501080_0018160
339 Ga0501080_0141798
340 Ga0501081_0000696
341 Ga0501081_0023358
342 Ga0501083_0073240
343 Ga0501035_0020691
344 Ga0501045_0083298
345 nmdc:mga0k408_119927_c1
346 nmdc:mga0qj67_91729_c1
347 nmdc:mga08y16_143778_c1
348 nmdc:mga0rr50_168405_c1
349 Ga0500641_0043152
350 Ga0500556_0000617
351 Ga0500559_0021728
352 Ga0500588_0008966
353 Ga0500590_108642
354 Ga0500616_0000064
355 Ga0500616_0007948
356 Ga0500630_102427
357 Ga0500633_0040474
358 Ga0500637_0106762
359 Ga0500637_0176264
360 Ga0501084_0028181
361 Ga0501084_0152609
362 Ga0501082_0000754
363 Ga0466962_0002561
364 Ga0530510_0022959

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01075

Glyco_transf_9

Glycosyltransferase family 9 (heptosyltransferase)

75

320

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tov-assembly2.cif.gz_B the crystal structure of the glycosyl transferase family 9 from veillonella parvula dsm 2008 0.839 9 348
6dfe-assembly1.cif.gz_A the structure of a ternary complex of e. coli waac 0.8285 10 347
3tov-assembly1.cif.gz_A the crystal structure of the glycosyl transferase family 9 from veillonella parvula dsm 2008 0.8222 9 348
6dfe-assembly1.cif.gz_A the structure of a ternary complex of e. coli waac 0.8213 10 347
3tov-assembly2.cif.gz_B the crystal structure of the glycosyl transferase family 9 from veillonella parvula dsm 2008 0.8186 9 348
ID Description Score Start End Superfamily
2h1fB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8529 10 156 3.40.50.2000
3tovB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8428 161 348 3.40.50.2000
af_A0A1D6L6D3_126_238_3.40.50.11720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;3-Deoxy-D-manno-octulosonic-acid transferase, N-terminal domain 0.8347 9 64 3.40.50.11720
3tovB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8337 161 348 3.40.50.2000
af_P25742_154_333_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8245 163 347 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A2A4WA54-F1-model_v4 Glycosyl transferase 0.9861 2 347 GO:0005829
GO:0008713
GO:0009244
AF-A0A3T1DG13-F1-model_v4 deleted 0.9835 250 353
AF-A0A847DCG4-F1-model_v4 Glycosyltransferase family 9 protein 0.9814 8 352 GO:0005829
GO:0008713
GO:0009244
AF-A0A1E7PXB9-F1-model_v4 Glycosyl transferase 0.9773 10 348 GO:0005829
GO:0008713
GO:0009244
AF-A0A4Q8CYU8-F1-model_v4 Heptosyltransferase I 0.975 6 350 GO:0005829
GO:0008713
GO:0009244

Map