F279515

General Info

Members Datasets Scaffolds Average Seq Length
182 90 176 349

Family's Representative Sequence

Representative Sequence 3300038742|Ga0400486_27452|Ga0400486_27452_2082_3314
Length 410
Sequence LGRQAEKTVSDRRITGNFTPPVEKMKIEPCTILTEPASSDKMPYSISLKPEYLPVAHKSKSSSPISLSYRDAGVDIDAGNALVERIKPIVKQTFRPGVLAGLGGFGALFELPLDRYREPVLVSGADGVGTKLKLALELNCHDSIGIDLVAMCANDIVVAGAEPLFFLDYYATGKLDVSTAADVVKGIAEGCQQAGAALTGGETAEMPGIYREGDYDLAGFCVGIAEKSRLILPDRVQRGDALIGIASSGPHSNGYSLVRKILQVTGANLDQSFQNTTLGKALLAPTRIYVKPLLALMETVEIHALAHITGGGLPENLPRVLPKGCKAVIDSTSWQLPPIFDWLQTQGKLPNSELLRTFNCGIGMVVCVAQEDVDTTFQLLKDKGEKAWLLGRIESANGATARFEINGPLA

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2643221554 Duganella sp. Root1480D1 Isolate Unclassified
3 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
4 2643221638 Duganella sp. Root336D2 Isolate Unclassified
5 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
6 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
7 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
8 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
19 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
20 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
21 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
22 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
23 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
24 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
26 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
28 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
29 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
37 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
38 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
39 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
40 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
41 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
42 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
43 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
44 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
45 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
47 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
48 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
49 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
50 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
51 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
52 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
53 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
54 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
55 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
56 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
57 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
58 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
59 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
60 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
61 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
64 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
68 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
69 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
70 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
71 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
81 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
82 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
83 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
84 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
85 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
86 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
87 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
90 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.31
Metatranscriptomes 4.4
Isolates 3.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.48
Nodule 0
Rhizoplane 1.65
Rhizosphere 56.59
Stem 0
Stem Tuber 0
Unclassified 25.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000215 3300002737 Bacteria 60646
2 JGI25158J39367_1001000 3300002739 Bacteria 5203
3 JGI25150J39212_1004349 3300002774 Bacteria 3165
4 JGI25153J46596_10005496 3300003215 Bacteria 6635
5 JGI25160J50197_1001501 3300003354 Bacteria 11589
6 Ga0055534_1001832 3300003784 Bacteria 7939
7 Ga0055528_1009770 3300003790 Bacteria 3978
8 Ga0055543_1000432 3300004625 Bacteria 25982
9 Ga0065165_1002863 3300005262 Bacteria 13338
10 Ga0070681_10021919 3300005458 Bacteria 6408
11 Ga0068855_100000564 3300005563 Bacteria 45514
12 Ga0068856_100038590 3300005614 Bacteria 4688
13 Ga0209436_100772 3300025208 Bacteria 13258
14 Ga0209436_102494 3300025208 Bacteria 5499
15 Ga0207425_1000006 3300025245 Bacteria 808854
16 Ga0207425_1000265 3300025245 Bacteria 38543
17 Ga0209129_1000009 3300025258 Bacteria 633100
18 Ga0209129_1001289 3300025258 Bacteria 14307
19 Ga0209565_1000740 3300025263 Bacteria 19421
20 Ga0209565_1001145 3300025263 Bacteria 12768
21 Ga0209130_1000067 3300025284 Bacteria 184277
22 Ga0209130_1000767 3300025284 Bacteria 27814
23 Ga0209130_1001157 3300025284 Bacteria 19096
24 Ga0209675_1001304 3300025291 Bacteria 14808
25 Ga0209675_1005971 3300025291 Bacteria 4985
26 Ga0209564_1000087 3300025295 Bacteria 250787
27 Ga0209758_1000071 3300025297 Bacteria 283749
28 Ga0209050_1000219 3300025298 Bacteria 128416
29 Ga0209050_1000320 3300025298 Bacteria 96836
30 Ga0209256_1003846 3300025299 Bacteria 10040
31 Ga0209256_1004235 3300025299 Bacteria 9196
32 Ga0207426_1003150 3300025302 Bacteria 9369
33 Ga0209257_1000010 3300025304 Bacteria 1158682
34 Ga0207707_10055351 3300025912 Bacteria 3450
35 Ga0207639_10094849 3300026041 Bacteria 2396
36 Ga0207702_10083188 3300026078 Bacteria 2784
37 Ga0268264_10029690 3300028381 Bacteria 4481
38 Ga0265327_10019378 3300031251 Bacteria 4185
39 Ga0307408_100020182 3300031548 Bacteria 4493
40 Ga0316579_10000076 3300031691 Bacteria 24968
41 Ga0316579_10000276 3300031691 Bacteria 15849
42 Ga0316579_10003984 3300031691 Bacteria 5823
43 Ga0316579_10021483 3300031691 Bacteria 2877
44 Ga0316576_10001899 3300031727 Bacteria 11628
45 Ga0316576_10027447 3300031727 Bacteria 4004
46 Ga0316576_10031508 3300031727 Bacteria 3762
47 Ga0316576_10038573 3300031727 Bacteria 3426
48 Ga0316576_10066738 3300031727 Bacteria 2647
49 Ga0316578_10006485 3300031728 Bacteria 5782
50 Ga0316578_10006514 3300031728 Bacteria 5773
51 Ga0316578_10008361 3300031728 Bacteria 5262
52 Ga0316578_10023199 3300031728 Bacteria 3471
53 Ga0316577_10010142 3300031733 Bacteria 5079
54 Ga0316577_10018793 3300031733 Bacteria 3824
55 Ga0316577_10021573 3300031733 Bacteria 3573
56 Ga0316577_10023753 3300031733 Bacteria 3404
57 Ga0316577_10102408 3300031733 Bacteria 1605
58 Ga0316577_10108950 3300031733 Bacteria 1554
59 Ga0307416_100007485 3300032002 Bacteria 6949
60 Ga0316583_10007814 3300032133 Bacteria 3856
61 Ga0316583_10015303 3300032133 Bacteria 2760
62 Ga0316583_10037072 3300032133 Bacteria 1728
63 Ga0316585_10013146 3300032137 Bacteria 2463
64 Ga0316585_10014954 3300032137 Bacteria 2324
65 Ga0316593_10001574 3300032168 Bacteria 5082
66 Ga0316593_10004406 3300032168 Bacteria 3612
67 Ga0316593_10018765 3300032168 Bacteria 2130
68 Ga0316593_10027761 3300032168 Bacteria 1819
69 Ga0316593_10062077 3300032168 Bacteria 1279
70 Ga0316587_1015156 3300033529 Bacteria 1277
71 Ga0316596_1002573 3300033541 Bacteria 3883
72 Ga0316596_1010406 3300033541 Bacteria 2250
73 Ga0316574_0000460 3300035398 Bacteria 16419
74 Ga0316574_0002888 3300035398 Bacteria 8734
75 Ga0316574_0009131 3300035398 Bacteria 5540
76 Ga0316574_0009830 3300035398 Bacteria 5376
77 Ga0316574_0036986 3300035398 Bacteria 2991
78 Ga0316582_0000694 3300036647 Bacteria 13303
79 Ga0316582_0002411 3300036647 Bacteria 8768
80 Ga0316582_0009352 3300036647 Bacteria 5316
81 Ga0316582_0018506 3300036647 Bacteria 4055
82 Ga0316582_0065278 3300036647 Bacteria 2343
83 Ga0316582_0108928 3300036647 Bacteria 1842
84 Ga0316584_0002053 3300036712 Bacteria 12605
85 Ga0316584_0003690 3300036712 Bacteria 10023
86 Ga0316584_0012726 3300036712 Bacteria 5938
87 Ga0316584_0020530 3300036712 Bacteria 4790
88 Ga0316584_0026161 3300036712 Bacteria 4287
89 Ga0316584_0042125 3300036712 Bacteria 3404
90 Ga0316584_0079745 3300036712 Bacteria 2453
91 Ga0316584_0207557 3300036712 Bacteria 1443
92 Ga0395905_0000137 3300037471 Bacteria 120800
93 Ga0395905_0000357 3300037471 Bacteria 64961
94 Ga0395905_0000924 3300037471 Bacteria 37913
95 Ga0395905_0172355 3300037471 Bacteria 2032
96 Ga0316581_0001120 3300037588 Bacteria 5827
97 Ga0316581_0003257 3300037588 Bacteria 4021
98 Ga0316581_0007058 3300037588 Bacteria 2997
99 Ga0316581_0011226 3300037588 Bacteria 2500
100 Ga0316581_0026783 3300037588 Bacteria 1722
101 Ga0395901_0126798 3300038443 Bacteria 2682
102 Ga0400484_01534 3300038725 Bacteria 20678
103 Ga0400484_05567 3300038725 Bacteria 13433
104 Ga0400484_32990 3300038725 Bacteria 5447
105 Ga0400490_01793 3300038726 Bacteria 18708
106 Ga0400490_03912 3300038726 Bacteria 3586
107 Ga0400490_07604 3300038726 Bacteria 22370
108 Ga0400490_18457 3300038726 Bacteria 45271
109 Ga0400490_28007 3300038726 Bacteria 14334
110 Ga0400490_34950 3300038726 Bacteria 16326
111 Ga0400490_38630 3300038726 Bacteria 27581
112 Ga0400491_19396 3300038727 Bacteria 2383
113 Ga0400491_28587 3300038727 Bacteria 3375
114 Ga0400485_05559 3300038735 Bacteria 72885
115 Ga0400485_11981 3300038735 Bacteria 42687
116 Ga0400485_18357 3300038735 Bacteria 3262
117 Ga0400488_00926 3300038741 Bacteria 6355
118 Ga0400488_14057 3300038741 Bacteria 3661
119 Ga0400488_14306 3300038741 Bacteria 4065
120 Ga0400488_36682 3300038741 Bacteria 8478
121 Ga0400486_02321 3300038742 Bacteria 14529
122 Ga0400486_03616 3300038742 Bacteria 4939
123 Ga0400486_19627 3300038742 Bacteria 369894
124 Ga0400486_23147 3300038742 Bacteria 54344
125 Ga0400486_27452 3300038742 Bacteria 5745
126 Ga0400483_074396 3300039062 Bacteria 22101
127 Ga0400483_103392 3300039062 Bacteria 6330
128 Ga0400483_114297 3300039062 Bacteria 5646
129 Ga0400483_125162 3300039062 Bacteria 15271
130 Ga0400483_148378 3300039062 Bacteria 3732
131 Ga0400483_193618 3300039062 Bacteria 9630
132 Ga0400483_207839 3300039062 Bacteria 57162
133 Ga0400483_215219 3300039062 Bacteria 3525
134 Ga0400483_231476 3300039062 Bacteria 27967
135 Ga0400483_252643 3300039062 Bacteria 28101
136 Ga0400489_02460 3300039093 Bacteria 7495
137 Ga0400489_50892 3300039093 Bacteria 21669
138 Ga0400487_15407 3300039110 Bacteria 33511
139 Ga0400487_16377 3300039110 Bacteria 3478
140 Ga0400487_20040 3300039110 Bacteria 47084
141 Ga0400487_59567 3300039110 Bacteria 21421
142 Ga0400487_61221 3300039110 Bacteria 13523
143 Ga0451577_0000122 3300042876 Bacteria 171004
144 Ga0466972_0000029 3300044658 Bacteria 165236
145 Ga0466972_0011973 3300044658 Bacteria 4358
146 Ga0466965_0013553 3300044683 Bacteria 3848
147 Ga0466964_0024293 3300044706 Bacteria 2361
148 Ga0453684_0000434 3300044712 Bacteria 170295
149 Ga0453684_0005238 3300044712 Bacteria 25958
150 Ga0453684_0026682 3300044712 Bacteria 8328
151 Ga0451576_0035749 3300045051 Bacteria 5268
152 Ga0495606_0006173 3300046507 Bacteria 11151
153 Ga0496101_0215519 3300048904 Bacteria 1488
154 Ga0496102_0041672 3300048905 Bacteria 4159
155 Ga0496115_0014315 3300048918 Bacteria 6005
156 Ga0501032_0084653 3300049569 Bacteria 2108
157 Ga0501033_0017110 3300049570 Bacteria 5480
158 Ga0501034_0023323 3300049571 Bacteria 6306
159 Ga0501036_0018247 3300049572 Bacteria 5876
160 Ga0501037_0002470 3300049573 Bacteria 13364
161 Ga0501037_0040219 3300049573 Bacteria 3440
162 Ga0501038_0011388 3300049574 Bacteria 8116
163 Ga0501043_0017672 3300049579 Bacteria 5593
164 Ga0501046_0009477 3300049580 Bacteria 8415
165 Ga0501047_0030513 3300049581 Bacteria 5196
166 Ga0501067_0035948 3300049583 Bacteria 2751
167 Ga0501069_0038502 3300049585 Bacteria 2640
168 Ga0501070_0015915 3300049586 Bacteria 6323
169 Ga0501073_0002738 3300049589 Bacteria 13213
170 Ga0501074_0004461 3300049590 Bacteria 10015
171 Ga0501227_001660 3300049665 Bacteria 4954
172 Ga0501079_0340216 3300049741 Bacteria 1175
173 Ga0501080_0021101 3300049742 Bacteria 6029
174 Ga0501080_0150014 3300049742 Bacteria 2155
175 Ga0501035_0007365 3300049822 Bacteria 10284
176 Ga0501044_0171266 3300049823 Bacteria 2142

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005458 Ga0070681_10021919 Ga0070681_100219197 300
2 3300025912 Ga0207707_10055351 Ga0207707_100553513 300
3 3300031251 Ga0265327_10019378 Ga0265327_100193783 318
4 3300028381 Ga0268264_10029690 Ga0268264_100296903 323
5 3300049573 Ga0501037_0002470 Ga0501037_0002470_8280_9341 323
6 3300049574 Ga0501038_0011388 Ga0501038_0011388_5925_7001 323
7 3300049590 Ga0501074_0004461 Ga0501074_0004461_1584_2645 323
8 3300049742 Ga0501080_0150014 Ga0501080_0150014_75_1136 323
9 3300038741 Ga0400488_00926 Ga0400488_00926_2431_3501 325
10 3300038741 Ga0400488_14306 Ga0400488_14306_1925_2998 325
11 3300049569 Ga0501032_0084653 Ga0501032_0084653_696_1745 325
12 3300049570 Ga0501033_0017110 Ga0501033_0017110_668_1717 325
13 3300049571 Ga0501034_0023323 Ga0501034_0023323_2212_3261 325
14 3300049572 Ga0501036_0018247 Ga0501036_0018247_1578_2627 325
15 3300049579 Ga0501043_0017672 Ga0501043_0017672_2696_3745 325
16 3300049581 Ga0501047_0030513 Ga0501047_0030513_2983_4032 325
17 3300049583 Ga0501067_0035948 Ga0501067_0035948_1616_2665 325
18 3300049589 Ga0501073_0002738 Ga0501073_0002738_8866_9915 325
19 3300049741 Ga0501079_0340216 Ga0501079_0340216_76_1125 325
20 3300049742 Ga0501080_0021101 Ga0501080_0021101_1044_2093 325
21 3300049822 Ga0501035_0007365 Ga0501035_0007365_1358_2407 325
22 3300049823 Ga0501044_0171266 Ga0501044_0171266_50_1099 325
23 3300038725 Ga0400484_05567 Ga0400484_05567_4269_5342 328
24 3300038735 Ga0400485_11981 Ga0400485_11981_30924_32033 328
25 3300038742 Ga0400486_23147 Ga0400486_23147_11269_12378 328
26 3300039110 Ga0400487_16377 Ga0400487_16377_1640_2749 328
27 3300049573 Ga0501037_0040219 Ga0501037_0040219_327_1403 328
28 3300049580 Ga0501046_0009477 Ga0501046_0009477_4226_5302 328
29 3300049585 Ga0501069_0038502 Ga0501069_0038502_1186_2271 328
30 3300049586 Ga0501070_0015915 Ga0501070_0015915_3186_4262 328
31 3300033541 Ga0316596_1010406 Ga0316596_10104061 329
32 3300037471 Ga0395905_0000357 Ga0395905_0000357_59750_60790 332
33 3300037471 Ga0395905_0000924 Ga0395905_0000924_8898_9935 332
34 3300032168 Ga0316593_10018765 Ga0316593_100187652 334
35 3300033541 Ga0316596_1002573 Ga0316596_10025736 334
36 3300042876 Ga0451577_0000122 Ga0451577_0000122_60162_61205 334
37 3300044712 Ga0453684_0000434 Ga0453684_0000434_108925_109968 334
38 3300044712 Ga0453684_0026682 Ga0453684_0026682_2387_3430 334
39 3300037471 Ga0395905_0172355 Ga0395905_0172355_173_1222 336
40 3300036647 Ga0316582_0000694 Ga0316582_0000694_4248_5270 339
41 3300036712 Ga0316584_0026161 Ga0316584_0026161_2086_3108 339
42 3300039062 Ga0400483_215219 Ga0400483_215219_317_1387 340
43 iso_pu_bacteria 8001522603 8001524665 340
44 3300031691 Ga0316579_10021483 Ga0316579_100214835 342
45 3300031733 Ga0316577_10023753 Ga0316577_100237531 342
46 3300032168 Ga0316593_10062077 Ga0316593_100620771 342
47 3300033529 Ga0316587_1015156 Ga0316587_10151561 342
48 3300036712 Ga0316584_0042125 Ga0316584_0042125_1727_2770 342
49 iso_pu_bacteria 2989392574 2989393952 342
50 3300038725 Ga0400484_32990 Ga0400484_32990_1633_2706 343
51 iso_pu_bacteria 2643221554 2643788463 343
52 iso_pu_bacteria 2643221603 2644029243 343
53 iso_pu_bacteria 2643221638 2644214968 343
54 3300031727 Ga0316576_10027447 Ga0316576_100274471 344
55 3300031733 Ga0316577_10018793 Ga0316577_100187934 344
56 3300035398 Ga0316574_0036986 Ga0316574_0036986_77_1117 344
57 3300005614 Ga0068856_100038590 Ga0068856_1000385902 345
58 3300026041 Ga0207639_10094849 Ga0207639_100948492 345
59 3300026078 Ga0207702_10083188 Ga0207702_100831883 345
60 3300045051 Ga0451576_0035749 Ga0451576_0035749_3796_4836 345
61 3300031691 Ga0316579_10000076 Ga0316579_1000007625 346
62 3300031691 Ga0316579_10000276 Ga0316579_100002766 346
63 3300031727 Ga0316576_10031508 Ga0316576_100315085 346
64 3300031728 Ga0316578_10008361 Ga0316578_100083613 346
65 3300031728 Ga0316578_10023199 Ga0316578_100231993 346
66 3300031733 Ga0316577_10108950 Ga0316577_101089502 346
67 3300032133 Ga0316583_10007814 Ga0316583_100078143 346
68 3300032133 Ga0316583_10015303 Ga0316583_100153031 346
69 3300032168 Ga0316593_10001574 Ga0316593_100015745 346
70 3300035398 Ga0316574_0009131 Ga0316574_0009131_2723_3781 346
71 3300035398 Ga0316574_0009830 Ga0316574_0009830_2527_3573 346
72 3300036647 Ga0316582_0002411 Ga0316582_0002411_1326_2387 346
73 3300036647 Ga0316582_0065278 Ga0316582_0065278_141_1202 346
74 3300036647 Ga0316582_0108928 Ga0316582_0108928_230_1276 346
75 3300036712 Ga0316584_0002053 Ga0316584_0002053_5687_6748 346
76 3300036712 Ga0316584_0207557 Ga0316584_0207557_256_1317 346
77 3300037588 Ga0316581_0001120 Ga0316581_0001120_4630_5691 346
78 3300037588 Ga0316581_0007058 Ga0316581_0007058_463_1527 346
79 3300038725 Ga0400484_01534 Ga0400484_01534_1767_2828 346
80 3300038726 Ga0400490_01793 Ga0400490_01793_5222_6283 346
81 3300038726 Ga0400490_18457 Ga0400490_18457_41072_42214 346
82 3300038726 Ga0400490_28007 Ga0400490_28007_6679_7740 346
83 3300038726 Ga0400490_34950 Ga0400490_34950_12125_13186 346
84 3300038726 Ga0400490_38630 Ga0400490_38630_22514_23584 346
85 3300038735 Ga0400485_05559 Ga0400485_05559_18633_19703 346
86 3300038735 Ga0400485_18357 Ga0400485_18357_1783_2844 346
87 3300038741 Ga0400488_14057 Ga0400488_14057_2241_3311 346
88 3300038741 Ga0400488_36682 Ga0400488_36682_988_2049 346
89 3300038742 Ga0400486_02321 Ga0400486_02321_5910_6971 346
90 3300038742 Ga0400486_03616 Ga0400486_03616_279_1349 346
91 3300038742 Ga0400486_19627 Ga0400486_19627_318794_319864 346
92 3300038742 Ga0400486_27452 Ga0400486_27452_2082_3314 346
93 3300039062 Ga0400483_074396 Ga0400483_074396_5477_6547 346
94 3300039062 Ga0400483_103392 Ga0400483_103392_3061_4131 346
95 3300039062 Ga0400483_125162 Ga0400483_125162_1749_2810 346
96 3300039062 Ga0400483_148378 Ga0400483_148378_2221_3291 346
97 3300039062 Ga0400483_207839 Ga0400483_207839_53931_55001 346
98 3300039062 Ga0400483_231476 Ga0400483_231476_10652_11722 346
99 3300039062 Ga0400483_252643 Ga0400483_252643_117_1187 346
100 3300039093 Ga0400489_50892 Ga0400489_50892_12766_13827 346
101 3300039110 Ga0400487_20040 Ga0400487_20040_43411_44481 346
102 3300039110 Ga0400487_61221 Ga0400487_61221_7699_8760 346
103 3300044712 Ga0453684_0005238 Ga0453684_0005238_4679_5722 346
104 3300046507 Ga0495606_0006173 Ga0495606_0006173_2367_3407 346
105 3300002739 JGI25158J39367_1001000 JGI25158J39367_10010003 347
106 3300002774 JGI25150J39212_1004349 JGI25150J39212_10043491 347
107 3300003215 JGI25153J46596_10005496 JGI25153J46596_100054962 347
108 3300003354 JGI25160J50197_1001501 JGI25160J50197_10015017 347
109 3300003784 Ga0055534_1001832 Ga0055534_10018327 347
110 3300003790 Ga0055528_1009770 Ga0055528_10097702 347
111 3300004625 Ga0055543_1000432 Ga0055543_10004324 347
112 3300005262 Ga0065165_1002863 Ga0065165_10028634 347
113 3300005563 Ga0068855_100000564 Ga0068855_10000056419 347
114 3300025208 Ga0209436_100772 Ga0209436_1007728 347
115 3300025208 Ga0209436_102494 Ga0209436_1024943 347
116 3300025245 Ga0207425_1000006 Ga0207425_1000006542 347
117 3300025245 Ga0207425_1000265 Ga0207425_100026520 347
118 3300025258 Ga0209129_1000009 Ga0209129_1000009371 347
119 3300025258 Ga0209129_1001289 Ga0209129_100128911 347
120 3300025263 Ga0209565_1000740 Ga0209565_100074014 347
121 3300025263 Ga0209565_1001145 Ga0209565_10011453 347
122 3300025284 Ga0209130_1000067 Ga0209130_1000067105 347
123 3300025284 Ga0209130_1000767 Ga0209130_10007674 347
124 3300025284 Ga0209130_1001157 Ga0209130_10011575 347
125 3300025291 Ga0209675_1001304 Ga0209675_10013049 347
126 3300025291 Ga0209675_1005971 Ga0209675_10059714 347
127 3300025295 Ga0209564_1000087 Ga0209564_100008746 347
128 3300025297 Ga0209758_1000071 Ga0209758_100007135 347
129 3300025298 Ga0209050_1000219 Ga0209050_10002194 347
130 3300025298 Ga0209050_1000320 Ga0209050_100032018 347
131 3300025299 Ga0209256_1003846 Ga0209256_10038469 347
132 3300025299 Ga0209256_1004235 Ga0209256_10042352 347
133 3300025302 Ga0207426_1003150 Ga0207426_10031507 347
134 3300025304 Ga0209257_1000010 Ga0209257_1000010284 347
135 3300031548 Ga0307408_100020182 Ga0307408_1000201824 347
136 3300031691 Ga0316579_10003984 Ga0316579_100039844 347
137 3300031727 Ga0316576_10001899 Ga0316576_100018993 347
138 3300031727 Ga0316576_10038573 Ga0316576_100385732 347
139 3300031727 Ga0316576_10066738 Ga0316576_100667382 347
140 3300031728 Ga0316578_10006485 Ga0316578_100064852 347
141 3300031728 Ga0316578_10006514 Ga0316578_100065142 347
142 3300031733 Ga0316577_10010142 Ga0316577_100101422 347
143 3300031733 Ga0316577_10021573 Ga0316577_100215733 347
144 3300031733 Ga0316577_10102408 Ga0316577_101024081 347
145 3300032002 Ga0307416_100007485 Ga0307416_1000074856 347
146 3300032133 Ga0316583_10037072 Ga0316583_100370722 347
147 3300032137 Ga0316585_10013146 Ga0316585_100131463 347
148 3300032137 Ga0316585_10014954 Ga0316585_100149542 347
149 3300032168 Ga0316593_10004406 Ga0316593_100044062 347
150 3300032168 Ga0316593_10027761 Ga0316593_100277612 347
151 3300035398 Ga0316574_0000460 Ga0316574_0000460_10789_11838 347
152 3300035398 Ga0316574_0002888 Ga0316574_0002888_3929_4999 347
153 3300036647 Ga0316582_0009352 Ga0316582_0009352_1084_2154 347
154 3300036647 Ga0316582_0018506 Ga0316582_0018506_2640_3728 347
155 3300036712 Ga0316584_0003690 Ga0316584_0003690_2040_3089 347
156 3300036712 Ga0316584_0012726 Ga0316584_0012726_2592_3662 347
157 3300036712 Ga0316584_0020530 Ga0316584_0020530_3083_4153 347
158 3300036712 Ga0316584_0079745 Ga0316584_0079745_707_1777 347
159 3300037471 Ga0395905_0000137 Ga0395905_0000137_42325_43368 347
160 3300037588 Ga0316581_0003257 Ga0316581_0003257_2228_3316 347
161 3300037588 Ga0316581_0011226 Ga0316581_0011226_118_1188 347
162 3300037588 Ga0316581_0026783 Ga0316581_0026783_349_1419 347
163 3300038443 Ga0395901_0126798 Ga0395901_0126798_667_1764 347
164 3300038726 Ga0400490_03912 Ga0400490_03912_1384_2457 347
165 3300038726 Ga0400490_07604 Ga0400490_07604_2762_3835 347
166 3300038727 Ga0400491_19396 Ga0400491_19396_1202_2275 347
167 3300038727 Ga0400491_28587 Ga0400491_28587_620_1693 347
168 3300039062 Ga0400483_114297 Ga0400483_114297_4083_5156 347
169 3300039062 Ga0400483_193618 Ga0400483_193618_249_1322 347
170 3300039093 Ga0400489_02460 Ga0400489_02460_6361_7434 347
171 3300039110 Ga0400487_15407 Ga0400487_15407_14585_15658 347
172 3300039110 Ga0400487_59567 Ga0400487_59567_4743_5816 347
173 3300044658 Ga0466972_0011973 Ga0466972_0011973_378_1421 347
174 3300044683 Ga0466965_0013553 Ga0466965_0013553_1679_2722 347
175 3300044706 Ga0466964_0024293 Ga0466964_0024293_1304_2347 347
176 3300048904 Ga0496101_0215519 Ga0496101_0215519_139_1182 347
177 3300048905 Ga0496102_0041672 Ga0496102_0041672_2361_3482 347
178 3300048918 Ga0496115_0014315 Ga0496115_0014315_1933_3000 347
179 3300049665 Ga0501227_001660 Ga0501227_001660_2984_4027 347
180 iso_pu_bacteria 2511231026 2511387141 347
181 3300002737 JGI25162J39368_1000215 JGI25162J39368_100021533 350
182 3300044658 Ga0466972_0000029 Ga0466972_0000029_49989_51146 350

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00586

AIRS

AIR synthase related protein, N-terminal domain

112

225

0.96

PF02769

AIRS_C

AIR synthase related protein, C-terminal domain

237

404

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vk4-assembly1.cif.gz_A crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from neisseria gonorrhoeae bound to amppnp and magnesium 0.9846 22 350
5vk4-assembly1.cif.gz_B crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from neisseria gonorrhoeae bound to amppnp and magnesium 0.9817 22 350
5vk4-assembly1.cif.gz_A crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from neisseria gonorrhoeae bound to amppnp and magnesium 0.9816 22 350
5vk4-assembly1.cif.gz_B crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from neisseria gonorrhoeae bound to amppnp and magnesium 0.9758 22 350
3p4e-assembly1.cif.gz_A-2 phosphoribosylformylglycinamidine cyclo-ligase from vibrio cholerae 0.9738 22 350
ID Description Score Start End Superfamily
5vk4B02 Alpha Beta;Alpha-Beta Complex;Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2;PurM-like C-terminal domain 0.9802 177 350 3.90.650.10
af_Q2FZI8_168_339_3.90.650.10 Alpha Beta;Alpha-Beta Complex;Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2;PurM-like C-terminal domain 0.9795 176 350 3.90.650.10
3p4eA02 Alpha Beta;Alpha-Beta Complex;Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2;PurM-like C-terminal domain 0.9741 176 350 3.90.650.10
3p4eA02 Alpha Beta;Alpha-Beta Complex;Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2;PurM-like C-terminal domain 0.9687 176 350 3.90.650.10
af_Q2FZI8_168_339_3.90.650.10 Alpha Beta;Alpha-Beta Complex;Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2;PurM-like C-terminal domain 0.9683 176 350 3.90.650.10
ID Description Score Start End GO Terms
AF-A0A258X4W3-F1-model_v4 deleted 0.9951 224 350
AF-A0A258XGR1-F1-model_v4 deleted 0.9933 66 350
AF-A0A3B9L7S9-F1-model_v4 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (AIR synthase) (Phosphoribosyl-aminoimidazole synthetase) 0.9919 234 350 GO:0004637
GO:0004641
GO:0005524
GO:0005829
GO:0006189
GO:0046084
AF-D4DPZ4-F1-model_v4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (AIR synthase) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) 0.9916 128 350 GO:0004637
GO:0004641
GO:0005524
GO:0005829
GO:0006189
GO:0046084
AF-A0A2S5R5Q5-F1-model_v4 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (AIR synthase) (Phosphoribosyl-aminoimidazole synthetase) 0.9916 229 350 GO:0004637
GO:0004641
GO:0005524
GO:0005829
GO:0006189
GO:0046084

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pLDDT pTM Quality
92.15 0.9 High
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Predicted Structure (AlphaFold2)

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