F279004

General Info

Members Datasets Scaffolds Average Seq Length
182 142 169 586

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10059154|Ga0105240_100591543
Length 621
Sequence MRRRTFLATLPATTLAAAALGGVAHATEQDKAAPAELPKFQPDGARSFDRPDVHAGDRPSGASFASRSAAFGLSGAAGTAHPLATLTAIEILKKGGSAADAAVAANACLGFLEPVSSGLGGDCYAMVWDPKQAKVVGLAGSGRSPQGLSLETARARAVNGVLPKLGAVTVSTPGALDAWWSLHQRYGKLKWAELFEPAIHLAQTGVPVPQIIGYYIPRNMAVFMRPGAGIEETANAAHVWMPGGKAPGEGDVFRNPDLARTYRMIAEGGRDAFYAGPIAHAIEAYFKRIGGWLAYEDLARHHSDWNTPLVTTYRGVEVHGMAANTQGLATLQMLNILENFDLRGAGFQSALSLHLQVEAKRLAYEDRARYYADPNFAKVPVEWLNSKDYAAQRAKLIRPDKILTPVYPGQAPSHGDTTYFTVADKDGMMVSMIQSNFRGMGSGLVSDAPGGGADWKTLGFMFQDRGELFSLKDGHPNIYAPGKRPFQTIIPGFATKGGQPWMSFGVMGGDMQPQGQTQIVLNRVDYGLDIQAAGDSPRWHHEGSSQTMGEDLPGLTPAGLLRLESGIPAATRRALIALGWPIGGSDGGFGRYECIEHRMNGQDRVWSAASEMRADGLALAY

Samples

Sample ID Description Type Environment
1 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
2 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
3 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
4 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
5 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
6 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
7 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
8 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
9 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
10 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
11 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
12 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
13 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
14 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
17 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
20 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
53 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
54 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
56 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
87 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
88 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
91 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
92 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
93 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
94 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
97 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
98 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
99 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
100 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
105 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
106 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
107 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
110 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
111 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
112 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
115 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
116 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
117 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
118 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
119 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
120 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
123 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
126 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
127 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
128 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
129 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
135 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
136 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
137 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
138 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
139 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
142 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.31
Metatranscriptomes 0.55
Isolates 7.14

Biome Distribution

Category Percentage (%)
Aerial Root 1.1
Bulb 0
Endosphere 7.69
Nodule 0
Rhizoplane 1.1
Rhizosphere 79.12
Stem 0
Stem Tuber 0
Unclassified 10.99

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055542_1002601 3300003762 Bacteria 5707
2 Ga0055531_10000723 3300003794 Bacteria 28071
3 Ga0070666_10000871 3300005335 Bacteria 18295
4 Ga0070682_100049583 3300005337 Bacteria 2618
5 Ga0070689_100000127 3300005340 Bacteria 43833
6 Ga0070689_100005155 3300005340 Bacteria 8891
7 Ga0070691_10004885 3300005341 Bacteria 6099
8 Ga0070688_100000229 3300005365 Bacteria 29530
9 Ga0070688_100017455 3300005365 Bacteria 4119
10 Ga0070667_100028730 3300005367 Bacteria 4631
11 Ga0070678_100010191 3300005456 Bacteria 5729
12 Ga0070679_100000170 3300005530 Bacteria 52368
13 Ga0070686_100000059 3300005544 Bacteria 84781
14 Ga0070665_100000024 3300005548 Bacteria 374559
15 Ga0070665_100000084 3300005548 Bacteria 180481
16 Ga0070665_100001261 3300005548 Bacteria 30464
17 Ga0068855_100000641 3300005563 Bacteria 42804
18 Ga0068852_100007801 3300005616 Bacteria 7838
19 Ga0068863_100032526 3300005841 Bacteria 4972
20 Ga0068858_100036335 3300005842 Bacteria 4568
21 Ga0075428_100134687 3300006844 Bacteria 2687
22 Ga0075434_100005581 3300006871 Bacteria 11464
23 Ga0075434_100069626 3300006871 Bacteria 3508
24 Ga0075429_100002743 3300006880 Bacteria 14875
25 Ga0075435_100007079 3300007076 Bacteria 7964
26 Ga0105240_10006135 3300009093 Bacteria 17726
27 Ga0105240_10059154 3300009093 Bacteria 4783
28 Ga0111539_10114309 3300009094 Bacteria 3166
29 Ga0105248_10009409 3300009177 Bacteria 10757
30 Ga0105248_10046964 3300009177 Bacteria 4841
31 Ga0105248_10114668 3300009177 Bacteria 3039
32 Ga0105237_10001122 3300009545 Bacteria 35886
33 Ga0105237_10098313 3300009545 Bacteria 2918
34 Ga0105238_10000410 3300009551 Bacteria 45587
35 Ga0105238_10016362 3300009551 Bacteria 7506
36 Ga0105238_10080377 3300009551 Bacteria 3249
37 Ga0105239_10000138 3300010375 Bacteria 102176
38 Ga0157373_10008750 3300013100 Bacteria 7501
39 Ga0157371_10001699 3300013102 Bacteria 22429
40 Ga0157371_10001777 3300013102 Bacteria 21790
41 Ga0157371_10003919 3300013102 Bacteria 13244
42 Ga0157370_10000145 3300013104 Bacteria 86693
43 Ga0157369_10020033 3300013105 Bacteria 7481
44 Ga0157369_10118996 3300013105 Bacteria 2803
45 Ga0157374_10007071 3300013296 Bacteria 9555
46 Ga0157378_10083400 3300013297 Bacteria 2892
47 Ga0163162_10005528 3300013306 Bacteria 12217
48 Ga0157372_10011262 3300013307 Bacteria 9512
49 Ga0157372_10024483 3300013307 Bacteria 6559
50 Ga0157375_10024748 3300013308 Bacteria 5563
51 Ga0182008_10000922 3300014497 Bacteria 20483
52 Ga0157379_10000978 3300014968 Bacteria 23173
53 Ga0157376_10018023 3300014969 Bacteria 5402
54 Ga0182006_1017125 3300015261 Bacteria 3084
55 Ga0182007_10000691 3300015262 Bacteria 19240
56 Ga0206356_11069222 3300020070 Bacteria 3108
57 Ga0213876_10002271 3300021384 Bacteria 11338
58 Ga0209148_1000318 3300025254 Bacteria 67692
59 Ga0209148_1002231 3300025254 Bacteria 7086
60 Ga0209455_1000730 3300025272 Bacteria 18929
61 Ga0209676_1000226 3300025292 Bacteria 124004
62 Ga0209676_1000449 3300025292 Bacteria 69842
63 Ga0209676_1001060 3300025292 Bacteria 31500
64 Ga0209050_1000286 3300025298 Bacteria 106566
65 Ga0209050_1012948 3300025298 Bacteria 3769
66 Ga0209257_1000321 3300025304 Bacteria 100476
67 Ga0209257_1000392 3300025304 Bacteria 87104
68 Ga0207697_10001263 3300025315 Bacteria 13896
69 Ga0207688_10016494 3300025901 Bacteria 4006
70 Ga0207680_10000975 3300025903 Bacteria 13496
71 Ga0207680_10034702 3300025903 Bacteria 2889
72 Ga0207647_10043282 3300025904 Bacteria 2818
73 Ga0207705_10002442 3300025909 Bacteria 14335
74 Ga0207707_10028875 3300025912 Unclassified 4848
75 Ga0207695_10004987 3300025913 Bacteria 17866
76 Ga0207671_10000545 3300025914 Bacteria 50856
77 Ga0207663_10104004 3300025916 Bacteria 1914
78 Ga0207662_10007585 3300025918 Bacteria 5911
79 Ga0207652_10001139 3300025921 Bacteria 23922
80 Ga0207652_10006190 3300025921 Bacteria 9668
81 Ga0207681_10024644 3300025923 Bacteria 3863
82 Ga0207694_10001369 3300025924 Bacteria 21001
83 Ga0207694_10034609 3300025924 Bacteria 3874
84 Ga0207659_10010399 3300025926 Bacteria 5848
85 Ga0207670_10000021 3300025936 Bacteria 155646
86 Ga0207691_10006710 3300025940 Bacteria 11102
87 Ga0207711_10001909 3300025941 Bacteria 18936
88 Ga0207711_10032118 3300025941 Bacteria 4438
89 Ga0207667_10005169 3300025949 Bacteria 15940
90 Ga0207640_10020875 3300025981 Bacteria 3894
91 Ga0207658_10109127 3300025986 Bacteria 2184
92 Ga0207703_10083915 3300026035 Bacteria 2663
93 Ga0207702_10062579 3300026078 Bacteria 3179
94 Ga0207683_10031202 3300026121 Bacteria 4624
95 Ga0207698_10011018 3300026142 Bacteria 5845
96 Ga0268266_10000002 3300028379 Bacteria 3059047
97 Ga0268266_10000019 3300028379 Bacteria 556465
98 Ga0268266_10001344 3300028379 Bacteria 29701
99 Ga0268266_10038802 3300028379 Bacteria 4055
100 Ga0265334_10008502 3300028573 Bacteria 4363
101 Ga0265338_10014107 3300028800 Bacteria 8938
102 Ga0265320_10000042 3300031240 Bacteria 124844
103 Ga0265327_10000101 3300031251 Bacteria 188671
104 Ga0265314_10012776 3300031711 Bacteria 6825
105 Ga0265314_10041374 3300031711 Bacteria 3299
106 Ga0265342_10045548 3300031712 Bacteria 2640
107 Ga0307412_10023836 3300031911 Bacteria 3771
108 Ga0373934_0001827 3300035086 Bacteria 7825
109 Ga0373955_0018207 3300035172 Bacteria 3489
110 Ga0373933_0007695 3300035724 Bacteria 5884
111 Ga0395899_0007530 3300037312 Bacteria 8412
112 Ga0395900_0061770 3300037418 Bacteria 3852
113 Ga0395900_0097248 3300037418 Bacteria 3025
114 Ga0237819_00862 3300038705 Bacteria 9524
115 Ga0436365_0826665 3300039437 Bacteria 7287
116 Ga0436361_0987061 3300039447 Bacteria 1895
117 Ga0451577_0037137 3300042876 Bacteria 4386
118 Ga0453684_0215406 3300044712 Bacteria 2229
119 Ga0451576_0025063 3300045051 Bacteria 6432
120 Ga0451576_0027428 3300045051 Bacteria 6116
121 Ga0495592_0037531 3300046454 Bacteria 3647
122 Ga0495651_0007130 3300046462 Bacteria 8548
123 Ga0495651_0125540 3300046462 Bacteria 1880
124 Ga0495653_0130180 3300046463 Bacteria 1783
125 Ga0495594_0001600 3300046499 Bacteria 11779
126 Ga0495628_0000254 3300046516 Bacteria 47207
127 Ga0495644_0000026 3300046523 Bacteria 70487
128 Ga0495648_0047045 3300046524 Bacteria 2670
129 Ga0495640_0005257 3300046533 Bacteria 10292
130 Ga0495609_0032372 3300046538 Bacteria 2375
131 Ga0495633_0042703 3300046558 Bacteria 2152
132 Ga0495625_0000853 3300046660 Bacteria 41514
133 Ga0495625_0004898 3300046660 Bacteria 12473
134 Ga0495625_0011652 3300046660 Bacteria 7154
135 Ga0495646_0016228 3300046680 Bacteria 4728
136 Ga0495613_0031656 3300046689 Bacteria 3929
137 Ga0495581_0004404 3300047315 Bacteria 8141
138 Ga0495604_0012187 3300047317 Bacteria 6834
139 Ga0495674_0009174 3300047319 Bacteria 9399
140 Ga0495676_0007774 3300047321 Bacteria 9836
141 Ga0495680_0088887 3300047322 Bacteria 2320
142 Ga0495680_0095647 3300047322 Bacteria 2220
143 Ga0495675_0004784 3300047444 Bacteria 8228
144 Ga0495686_0000164 3300047472 Bacteria 126101
145 Ga0495686_0001057 3300047472 Bacteria 32920
146 Ga0495686_0050334 3300047472 Bacteria 2618
147 Ga0496112_0118038 3300048915 Bacteria 2623
148 Ga0496114_0121893 3300048917 Bacteria 2243
149 Ga0496117_0089235 3300048920 Bacteria 1992
150 Ga0496119_0026609 3300048922 Bacteria 4006
151 Ga0496121_0000387 3300048924 Bacteria 89835
152 Ga0496121_0004446 3300048924 Bacteria 18838
153 Ga0496122_0002079 3300048925 Bacteria 29672
154 Ga0496123_0004907 3300048926 Bacteria 13734
155 Ga0496125_0046827 3300048928 Bacteria 3623
156 Ga0496126_0000010 3300048929 Bacteria 744888
157 Ga0496126_0001397 3300048929 Bacteria 38227
158 Ga0496126_0046838 3300048929 Bacteria 3962
159 Ga0501047_0000490 3300049581 Bacteria 43118
160 Ga0501070_0042399 3300049586 Bacteria 3790
161 Ga0501249_000049 3300049679 Bacteria 50472
162 nmdc:mga05p37_245416_c1 3300050507 Bacteria 2150
163 nmdc:mga09592_1113_c1 3300050508 Bacteria 21394
164 nmdc:mga0n895_17920_c1 3300050512 Bacteria 6543
165 nmdc:mga0n895_83862_c1 3300050512 Bacteria 3179
166 nmdc:mga0a205_15235_c1 3300050515 Bacteria 7184
167 Ga0495619_0128836 3300053085 Bacteria 1738
168 Ga0500643_011958 3300053087 Bacteria 3132
169 Ga0500627_0000013 3300053158 Bacteria 136204

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025912 Ga0207707_10028875 Ga0207707_100288751 482
2 3300053085 Ga0495619_0128836 Ga0495619_0128836_13_1488 488
3 3300039447 Ga0436361_0987061 Ga0436361_0987061_304_1875 514
4 3300014497 Ga0182008_10000922 Ga0182008_100009223 515
5 3300015261 Ga0182006_1017125 Ga0182006_10171252 515
6 3300015262 Ga0182007_10000691 Ga0182007_1000069112 515
7 3300005456 Ga0070678_100010191 Ga0070678_1000101912 527
8 3300026121 Ga0207683_10031202 Ga0207683_100312022 527
9 3300047472 Ga0495686_0050334 Ga0495686_0050334_983_2566 527
10 3300048917 Ga0496114_0121893 Ga0496114_0121893_56_1639 527
11 3300013297 Ga0157378_10083400 Ga0157378_100834002 528
12 3300048915 Ga0496112_0118038 Ga0496112_0118038_50_1657 528
13 3300031711 Ga0265314_10012776 Ga0265314_100127765 529
14 3300037418 Ga0395900_0061770 Ga0395900_0061770_44_1669 537
15 3300009177 Ga0105248_10046964 Ga0105248_100469644 540
16 3300005335 Ga0070666_10000871 Ga0070666_100008719 544
17 3300005367 Ga0070667_100028730 Ga0070667_1000287303 544
18 3300025903 Ga0207680_10000975 Ga0207680_100009758 544
19 3300025941 Ga0207711_10032118 Ga0207711_100321182 544
20 3300028379 Ga0268266_10038802 Ga0268266_100388023 544
21 3300046463 Ga0495653_0130180 Ga0495653_0130180_80_1762 555
22 3300006871 Ga0075434_100005581 Ga0075434_1000055815 557
23 3300009094 Ga0111539_10114309 Ga0111539_101143092 557
24 3300046462 Ga0495651_0125540 Ga0495651_0125540_17_1705 557
25 3300050512 nmdc:mga0n895_17920_c1 nmdc:mga0n895_17920_c1_1814_3532 557
26 3300050515 nmdc:mga0a205_15235_c1 nmdc:mga0a205_15235_c1_3032_4750 557
27 3300028573 Ga0265334_10008502 Ga0265334_100085024 558
28 3300031711 Ga0265314_10041374 Ga0265314_100413742 558
29 3300042876 Ga0451577_0037137 Ga0451577_0037137_2220_3908 559
30 3300013296 Ga0157374_10007071 Ga0157374_100070712 562
31 3300014969 Ga0157376_10018023 Ga0157376_100180232 562
32 3300025901 Ga0207688_10016494 Ga0207688_100164942 562
33 3300006844 Ga0075428_100134687 Ga0075428_1001346872 563
34 3300013308 Ga0157375_10024748 Ga0157375_100247484 563
35 3300025315 Ga0207697_10001263 Ga0207697_1000126310 563
36 3300025903 Ga0207680_10034702 Ga0207680_100347022 563
37 3300025923 Ga0207681_10024644 Ga0207681_100246442 563
38 3300025926 Ga0207659_10010399 Ga0207659_100103992 563
39 3300025940 Ga0207691_10006710 Ga0207691_100067106 563
40 3300025986 Ga0207658_10109127 Ga0207658_101091271 563
41 3300031251 Ga0265327_10000101 Ga0265327_1000010130 563
42 3300013102 Ga0157371_10001699 Ga0157371_100016996 564
43 3300013102 Ga0157371_10003919 Ga0157371_100039192 564
44 3300013307 Ga0157372_10024483 Ga0157372_100244833 564
45 3300028800 Ga0265338_10014107 Ga0265338_100141077 564
46 3300045051 Ga0451576_0027428 Ga0451576_0027428_269_1975 564
47 3300050507 nmdc:mga05p37_245416_c1 nmdc:mga05p37_245416_c1_220_1926 564
48 3300005337 Ga0070682_100049583 Ga0070682_1000495831 566
49 3300005616 Ga0068852_100007801 Ga0068852_1000078012 566
50 3300013100 Ga0157373_10008750 Ga0157373_100087502 566
51 3300013102 Ga0157371_10001777 Ga0157371_100017776 566
52 3300013105 Ga0157369_10118996 Ga0157369_101189962 566
53 3300013307 Ga0157372_10011262 Ga0157372_100112628 566
54 3300025921 Ga0207652_10006190 Ga0207652_100061901 566
55 3300026142 Ga0207698_10011018 Ga0207698_100110183 566
56 3300006871 Ga0075434_100069626 Ga0075434_1000696262 568
57 3300045051 Ga0451576_0025063 Ga0451576_0025063_527_2254 568
58 iso_pu_bacteria 2889415604 2889421886 568
59 3300006880 Ga0075429_100002743 Ga0075429_1000027436 570
60 3300035086 Ga0373934_0001827 Ga0373934_0001827_1852_3582 570
61 3300035172 Ga0373955_0018207 Ga0373955_0018207_326_2056 570
62 3300035724 Ga0373933_0007695 Ga0373933_0007695_3442_5172 570
63 3300044712 Ga0453684_0215406 Ga0453684_0215406_424_2154 570
64 3300046454 Ga0495592_0037531 Ga0495592_0037531_1714_3444 570
65 3300046516 Ga0495628_0000254 Ga0495628_0000254_8388_10118 570
66 3300046660 Ga0495625_0000853 Ga0495625_0000853_4787_6502 570
67 3300047322 Ga0495680_0088887 Ga0495680_0088887_370_2100 570
68 3300047444 Ga0495675_0004784 Ga0495675_0004784_4461_6191 570
69 3300050508 nmdc:mga09592_1113_c1 nmdc:mga09592_1113_c1_10718_12448 570
70 3300005340 Ga0070689_100000127 Ga0070689_10000012719 571
71 3300005365 Ga0070688_100000229 Ga0070688_1000002298 571
72 3300005841 Ga0068863_100032526 Ga0068863_1000325261 571
73 3300025936 Ga0207670_10000021 Ga0207670_1000002151 571
74 3300005340 Ga0070689_100005155 Ga0070689_1000051556 572
75 3300005365 Ga0070688_100017455 Ga0070688_1000174552 572
76 3300007076 Ga0075435_100007079 Ga0075435_1000070795 572
77 3300025918 Ga0207662_10007585 Ga0207662_100075852 572
78 3300031240 Ga0265320_10000042 Ga0265320_1000004257 574
79 3300005341 Ga0070691_10004885 Ga0070691_100048853 575
80 3300005842 Ga0068858_100036335 Ga0068858_1000363354 575
81 3300014968 Ga0157379_10000978 Ga0157379_1000097811 575
82 3300025916 Ga0207663_10104004 Ga0207663_101040042 575
83 3300026035 Ga0207703_10083915 Ga0207703_100839152 575
84 3300013104 Ga0157370_10000145 Ga0157370_1000014533 581
85 3300048929 Ga0496126_0000010 Ga0496126_0000010_487222_488970 581
86 3300021384 Ga0213876_10002271 Ga0213876_100022714 584
87 3300039437 Ga0436365_0826665 Ga0436365_0826665_4809_6638 584
88 3300047472 Ga0495686_0000164 Ga0495686_0000164_85657_87423 586
89 3300009177 Ga0105248_10114668 Ga0105248_101146683 587
90 3300013306 Ga0163162_10005528 Ga0163162_1000552813 587
91 3300046462 Ga0495651_0007130 Ga0495651_0007130_1943_3718 587
92 3300046499 Ga0495594_0001600 Ga0495594_0001600_4687_6462 587
93 3300046523 Ga0495644_0000026 Ga0495644_0000026_56489_58264 587
94 3300046524 Ga0495648_0047045 Ga0495648_0047045_23_1831 587
95 3300046533 Ga0495640_0005257 Ga0495640_0005257_3508_5283 587
96 3300046538 Ga0495609_0032372 Ga0495609_0032372_391_2166 587
97 3300046558 Ga0495633_0042703 Ga0495633_0042703_151_1926 587
98 3300046660 Ga0495625_0004898 Ga0495625_0004898_5734_7542 587
99 3300046660 Ga0495625_0011652 Ga0495625_0011652_479_2254 587
100 3300047317 Ga0495604_0012187 Ga0495604_0012187_83_1858 587
101 3300048928 Ga0496125_0046827 Ga0496125_0046827_813_2636 587
102 3300053087 Ga0500643_011958 Ga0500643_011958_1240_3048 587
103 3300048922 Ga0496119_0026609 Ga0496119_0026609_1427_3253 588
104 3300020070 Ga0206356_11069222 Ga0206356_110692222 591
105 3300005548 Ga0070665_100000084 Ga0070665_10000008429 595
106 3300028379 Ga0268266_10000002 Ga0268266_10000002755 595
107 3300049586 Ga0501070_0042399 Ga0501070_0042399_1728_3569 595
108 iso_pu_bacteria 2643221541 2643728396 595
109 iso_pu_bacteria 2643221606 2644042655 595
110 iso_pu_bacteria 2643221671 2644395914 595
111 3300005563 Ga0068855_100000641 Ga0068855_10000064144 598
112 3300009093 Ga0105240_10006135 Ga0105240_100061356 598
113 3300009551 Ga0105238_10016362 Ga0105238_100163624 598
114 3300025949 Ga0207667_10005169 Ga0207667_1000516916 598
115 3300026078 Ga0207702_10062579 Ga0207702_100625793 598
116 3300009545 Ga0105237_10098313 Ga0105237_100983132 599
117 3300049581 Ga0501047_0000490 Ga0501047_0000490_33019_34824 599
118 3300049679 Ga0501249_000049 Ga0501249_000049_47846_49651 599
119 iso_pu_bacteria 2830075706 2830079173 599
120 iso_pu_bacteria 2990265787 2990267625 599
121 iso_pu_bacteria 2993693658 2993695139 599
122 3300009545 Ga0105237_10001122 Ga0105237_1000112229 600
123 3300010375 Ga0105239_10000138 Ga0105239_1000013870 600
124 3300025913 Ga0207695_10004987 Ga0207695_100049873 600
125 3300025914 Ga0207671_10000545 Ga0207671_100005459 600
126 3300025981 Ga0207640_10020875 Ga0207640_100208753 600
127 3300048920 Ga0496117_0089235 Ga0496117_0089235_60_1868 600
128 3300048924 Ga0496121_0000387 Ga0496121_0000387_72018_73826 600
129 3300048924 Ga0496121_0004446 Ga0496121_0004446_9727_11550 600
130 3300048929 Ga0496126_0046838 Ga0496126_0046838_1983_3791 600
131 3300047472 Ga0495686_0001057 Ga0495686_0001057_26511_28322 601
132 3300025292 Ga0209676_1000226 Ga0209676_100022612 602
133 3300025292 Ga0209676_1000449 Ga0209676_100044960 602
134 3300025298 Ga0209050_1012948 Ga0209050_10129482 602
135 3300025304 Ga0209257_1000392 Ga0209257_10003929 602
136 3300031911 Ga0307412_10023836 Ga0307412_100238364 602
137 3300038705 Ga0237819_00862 Ga0237819_00862_5678_7495 602
138 iso_pu_bacteria 2643221563 2643836161 602
139 iso_pu_bacteria 2643221605 2644037735 602
140 iso_pu_bacteria 2643221608 2644052638 602
141 iso_pu_bacteria 2848297114 2848298044 602
142 iso_pu_bacteria 2852653556 2852654651 602
143 iso_pu_bacteria 2852680915 2852681517 602
144 3300005548 Ga0070665_100001261 Ga0070665_10000126111 603
145 3300009551 Ga0105238_10080377 Ga0105238_100803772 603
146 3300025924 Ga0207694_10034609 Ga0207694_100346092 603
147 3300028379 Ga0268266_10001344 Ga0268266_1000134411 603
148 3300046680 Ga0495646_0016228 Ga0495646_0016228_1695_3527 605
149 3300046689 Ga0495613_0031656 Ga0495613_0031656_563_2395 605
150 3300047315 Ga0495581_0004404 Ga0495581_0004404_4670_6502 605
151 3300047319 Ga0495674_0009174 Ga0495674_0009174_4626_6458 605
152 3300047321 Ga0495676_0007774 Ga0495676_0007774_4799_6631 605
153 3300047322 Ga0495680_0095647 Ga0495680_0095647_63_1895 605
154 3300003762 Ga0055542_1002601 Ga0055542_10026015 606
155 3300003794 Ga0055531_10000723 Ga0055531_100007235 606
156 3300005530 Ga0070679_100000170 Ga0070679_10000017015 606
157 3300005544 Ga0070686_100000059 Ga0070686_1000000592 606
158 3300005548 Ga0070665_100000024 Ga0070665_100000024140 606
159 3300009093 Ga0105240_10059154 Ga0105240_100591543 606
160 3300009177 Ga0105248_10009409 Ga0105248_100094096 606
161 3300009551 Ga0105238_10000410 Ga0105238_1000041017 606
162 3300013105 Ga0157369_10020033 Ga0157369_100200337 606
163 3300025254 Ga0209148_1000318 Ga0209148_100031826 606
164 3300025254 Ga0209148_1002231 Ga0209148_10022314 606
165 3300025272 Ga0209455_1000730 Ga0209455_100073011 606
166 3300025292 Ga0209676_1001060 Ga0209676_100106021 606
167 3300025298 Ga0209050_1000286 Ga0209050_100028613 606
168 3300025304 Ga0209257_1000321 Ga0209257_100032179 606
169 3300025904 Ga0207647_10043282 Ga0207647_100432822 606
170 3300025909 Ga0207705_10002442 Ga0207705_100024422 606
171 3300025921 Ga0207652_10001139 Ga0207652_100011393 606
172 3300025924 Ga0207694_10001369 Ga0207694_1000136916 606
173 3300025941 Ga0207711_10001909 Ga0207711_1000190916 606
174 3300028379 Ga0268266_10000019 Ga0268266_10000019222 606
175 3300031712 Ga0265342_10045548 Ga0265342_100455482 606
176 3300037312 Ga0395899_0007530 Ga0395899_0007530_6071_7924 606
177 3300037418 Ga0395900_0097248 Ga0395900_0097248_26_1891 606
178 3300048925 Ga0496122_0002079 Ga0496122_0002079_2554_4437 606
179 3300048926 Ga0496123_0004907 Ga0496123_0004907_10899_12782 606
180 3300048929 Ga0496126_0001397 Ga0496126_0001397_9880_11718 606
181 3300050512 nmdc:mga0n895_83862_c1 nmdc:mga0n895_83862_c1_961_2817 606
182 3300053158 Ga0500627_0000013 Ga0500627_0000013_53496_55343 606

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01019

G_glu_transpept

Gamma-glutamyltranspeptidase

89

616

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nlz-assembly1.cif.gz_C crystal structure of cephalosporin acylase from bacillus halodurans 0.935 42 606
7d9x-assembly1.cif.gz_A highly active mutant w525d of gamma-glutamyltranspeptidase from pseudomonas nitroreducens 0.9347 76 396
2nlz-assembly1.cif.gz_C crystal structure of cephalosporin acylase from bacillus halodurans 0.9265 42 606
3a75-assembly1.cif.gz_B crystal structure of glutamate complex of halotolerant γ-glutamyltranspeptidase from bacillus subtilis 0.9217 413 597
2e0w-assembly1.cif.gz_A t391a precursor mutant protein of gamma-glutamyltranspeptidase from escherichia coli 0.9183 62 606
ID Description Score Start End Superfamily
af_Q2G1F4_245_350_1.10.246.130 Mainly Alpha;Orthogonal Bundle;Serum Albumin; Chain A, Domain 1;Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.9715 302 400 1.10.246.130
af_A0A1D8PLV5_261_374_1.10.246.130 Mainly Alpha;Orthogonal Bundle;Serum Albumin; Chain A, Domain 1;Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.9483 302 399 1.10.246.130
af_I6X9S5_228_337_1.10.246.130 Mainly Alpha;Orthogonal Bundle;Serum Albumin; Chain A, Domain 1;Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.941 303 403 1.10.246.130
af_I6X9S5_338_511_3.60.20.40 Alpha Beta;4-Layer Sandwich;Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1;Gamma-glutamyltranspeptidase, small (S) subunit 0.9396 428 602 3.60.20.40
2v36A02 Mainly Alpha;Orthogonal Bundle;Serum Albumin; Chain A, Domain 1;Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.9255 302 400 1.10.246.130
ID Description Score Start End GO Terms
AF-A0A519P0M2-F1-model_v4 Gamma-glutamyltransferase 0.9897 81 457 GO:0016740
AF-A0A519PK29-F1-model_v4 Gamma-glutamyltransferase family protein 0.9852 50 532 GO:0016740
AF-A0A6J4SB81-F1-model_v4 Gamma-glutamyltranspeptidase @ Glutathione hydrolase (EC 2.3.2.2, EC 3.4.19.13) 0.9756 64 606 GO:0036374
GO:0103068
AF-A0A2J6X9U0-F1-model_v4 Gamma-glutamyltransferase 0.9749 61 514 GO:0016740
AF-A0A519P0M2-F1-model_v4 Gamma-glutamyltransferase 0.9743 81 457 GO:0016740

Feature Viewer

pLDDT pTM Quality
86.26 0.88 High
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Predicted Structure (AlphaFold2)

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