F274672

General Info

Members Datasets Scaffolds Average Seq Length
179 96 358 279

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2671180195|2671834913
Length 319
Sequence QATPATQPTTQARQPAPPRPTPGRTASRTTPERLMPVRTVLTIAGLTLREASRRKVMRALGALTVLLLALSAWGFSQLGAAADDGGLTSGEKLMACSQILNLVMFGFSLIAALGTAFLAGPTLAGETESGIALAMLARPIRRSAFLLGKWLGLVVFGTVYVVLAGVAQCLVVLATSGYWPPEPATALALLAAQAIVLLTLAVLLSTAVSPMASGVVSIGLFGSAWVAGVIGGVGAALDNEAVERVGTVSRILLPTDGLWRGAMHGFQDPSVLHRFAAGEFEAFPFLSVHSLTAAYLAWAVVWVVLVWSVAAASFRRRNL

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
35 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
36 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
37 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
38 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
39 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
43 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
46 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
47 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
51 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
52 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
53 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
54 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
55 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
56 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
57 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
58 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
59 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
60 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
61 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
62 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
63 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
64 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
65 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
66 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
75 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
76 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
78 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
79 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
80 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
81 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
82 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
83 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
84 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
85 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
86 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
87 2671180195 Frankia sp. CcI49 Isolate Nodule
88 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
89 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
90 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
91 2773857922 Frankia sp. CcI49 Isolate Nodule
92 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
93 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
94 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
95 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
96 8002775197 Frankia nepalensis CN7 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.74
Metatranscriptomes 1.68
Isolates 5.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 2.23
Rhizoplane 1.68
Rhizosphere 92.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001109 3300003203 Bacteria 12620
2 Ga0070683_100463908 3300005329 Bacteria 1209
3 Ga0070680_100212319 3300005336 Bacteria 1633
4 Ga0070682_100448926 3300005337 Bacteria 987
5 Ga0070660_100640448 3300005339 Bacteria 890
6 Ga0070668_100000179 3300005347 Bacteria 40901
7 Ga0070700_100000094 3300005441 Bacteria 60178
8 Ga0070708_100000274 3300005445 Bacteria 38511
9 Ga0070708_100043541 3300005445 Bacteria 3944
10 Ga0070681_10348995 3300005458 Bacteria 1390
11 Ga0070706_100172915 3300005467 Bacteria 2017
12 Ga0070707_100098713 3300005468 Bacteria 2829
13 Ga0070707_100349236 3300005468 Bacteria 1437
14 Ga0070698_100502040 3300005471 Bacteria 1151
15 Ga0070696_100174884 3300005546 Bacteria 1590
16 Ga0070665_100251750 3300005548 Bacteria 1767
17 Ga0081538_10000748 3300005981 Bacteria 35447
18 Ga0081539_10000173 3300005985 Bacteria 151356
19 Ga0081539_10000780 3300005985 Bacteria 62088
20 Ga0081539_10003466 3300005985 Bacteria 19310
21 Ga0081539_10011681 3300005985 Bacteria 6902
22 Ga0081539_10022098 3300005985 Bacteria 4221
23 Ga0081539_10025566 3300005985 Bacteria 3798
24 Ga0081539_10075953 3300005985 Bacteria 1782
25 Ga0081539_10142957 3300005985 Bacteria 1160
26 Ga0081539_10145616 3300005985 Bacteria 1146
27 Ga0075428_100001953 3300006844 Bacteria 22164
28 Ga0075430_100447290 3300006846 Bacteria 1066
29 Ga0075431_100138363 3300006847 Bacteria 2510
30 Ga0075431_100151908 3300006847 Bacteria 2384
31 Ga0111539_10142154 3300009094 Bacteria 2809
32 Ga0111539_10232313 3300009094 Bacteria 2148
33 Ga0114129_10035399 3300009147 Bacteria 7053
34 Ga0105238_10127602 3300009551 Bacteria 2522
35 Ga0157369_10049795 3300013105 Bacteria 4539
36 Ga0157369_10107450 3300013105 Bacteria 2968
37 Ga0163163_10114810 3300014325 Bacteria 2724
38 Ga0197907_11086050 3300020069 Bacteria 1181
39 Ga0206353_10684051 3300020082 Bacteria 5661
40 Ga0206353_11633059 3300020082 Bacteria 1219
41 Ga0207684_10258918 3300025910 Bacteria 1501
42 Ga0207657_10422078 3300025919 Bacteria 1048
43 Ga0207652_10031671 3300025921 Bacteria 4443
44 Ga0207652_10081994 3300025921 Bacteria 2822
45 Ga0207646_10104925 3300025922 Bacteria 2534
46 Ga0207668_10000973 3300025972 Bacteria 17219
47 Ga0207708_10000123 3300026075 Bacteria 60071
48 Ga0207683_10033667 3300026121 Bacteria 4452
49 Ga0207428_10060681 3300027907 Bacteria 2996
50 Ga0265334_10002666 3300028573 Bacteria 8256
51 Ga0307513_10025116 3300031456 Bacteria 6914
52 Ga0307513_10247679 3300031456 Bacteria 1581
53 Ga0307413_10033020 3300031824 Bacteria 2941
54 Ga0307413_10462832 3300031824 Bacteria 1009
55 Ga0307410_10063145 3300031852 Bacteria 2540
56 Ga0307410_10075919 3300031852 Bacteria 2344
57 Ga0307410_10099896 3300031852 Bacteria 2078
58 Ga0307410_10171454 3300031852 Bacteria 1635
59 Ga0307410_10188082 3300031852 Bacteria 1568
60 Ga0326468_10000898 3300031889 Bacteria 2903
61 Ga0307406_10018845 3300031901 Bacteria 4041
62 Ga0307406_10027420 3300031901 Bacteria 3432
63 Ga0307406_10036535 3300031901 Bacteria 3028
64 Ga0307406_10056337 3300031901 Bacteria 2517
65 Ga0307406_10122448 3300031901 Bacteria 1811
66 Ga0307406_10347224 3300031901 Bacteria 1158
67 Ga0307406_10410150 3300031901 Bacteria 1076
68 Ga0307407_10011765 3300031903 Bacteria 4182
69 Ga0307407_10012574 3300031903 Bacteria 4074
70 Ga0307407_10017286 3300031903 Bacteria 3614
71 Ga0307407_10098409 3300031903 Bacteria 1810
72 Ga0307407_10302763 3300031903 Bacteria 1115
73 Ga0307407_10315899 3300031903 Bacteria 1094
74 Ga0307412_10159533 3300031911 Bacteria 1674
75 Ga0307409_100019080 3300031995 Bacteria 4632
76 Ga0307409_100019253 3300031995 Bacteria 4616
77 Ga0307409_100078173 3300031995 Bacteria 2661
78 Ga0307409_100159053 3300031995 Bacteria 1973
79 Ga0307409_100229726 3300031995 Bacteria 1681
80 Ga0307409_100236581 3300031995 Bacteria 1659
81 Ga0307409_100272900 3300031995 Bacteria 1558
82 Ga0307409_100497130 3300031995 Bacteria 1187
83 Ga0307409_100571923 3300031995 Bacteria 1113
84 Ga0307409_100733916 3300031995 Bacteria 990
85 Ga0307416_100004899 3300032002 Bacteria 8148
86 Ga0307416_100087729 3300032002 Bacteria 2657
87 Ga0307416_100667650 3300032002 Bacteria 1126
88 Ga0307416_100835468 3300032002 Bacteria 1018
89 Ga0307414_10322566 3300032004 Bacteria 1315
90 Ga0307414_10435346 3300032004 Bacteria 1147
91 Ga0307411_10019020 3300032005 Bacteria 3957
92 Ga0307411_10091998 3300032005 Bacteria 2120
93 Ga0307411_10606748 3300032005 Bacteria 942
94 Ga0307415_100039428 3300032126 Bacteria 3122
95 Ga0307415_100048405 3300032126 Bacteria 2868
96 Ga0307415_100080319 3300032126 Bacteria 2326
97 Ga0307415_100122945 3300032126 Bacteria 1950
98 Ga0307415_100158260 3300032126 Bacteria 1752
99 Ga0307415_100250051 3300032126 Bacteria 1440
100 Ga0307415_100278818 3300032126 Bacteria 1373
101 Ga0307415_100388079 3300032126 Bacteria 1188
102 Ga0307415_100480787 3300032126 Bacteria 1081
103 Ga0395900_0108076 3300037418 Bacteria 2858
104 Ga0395898_0081190 3300037466 Bacteria 3127
105 Ga0395898_0177239 3300037466 Bacteria 2037
106 Ga0436364_0751711 3300037853 Bacteria 4434
107 Ga0466972_0134380 3300044658 Bacteria 1165
108 Ga0466961_0023884 3300044693 Bacteria 3934
109 Ga0466963_0088806 3300044694 Bacteria 2102
110 Ga0466963_0251987 3300044694 Bacteria 1239
111 Ga0466964_0167775 3300044706 Bacteria 1031
112 Ga0466964_0188219 3300044706 Bacteria 983
113 Ga0466970_0010163 3300044765 Bacteria 4770
114 Ga0466970_0028426 3300044765 Bacteria 2938
115 Ga0466970_0157330 3300044765 Bacteria 1256
116 Ga0466957_0046008 3300044842 Bacteria 2648
117 Ga0466957_0074947 3300044842 Bacteria 2099
118 Ga0466957_0108843 3300044842 Bacteria 1755
119 Ga0466957_0427355 3300044842 Bacteria 910
120 Ga0466960_0007373 3300044901 Bacteria 4467
121 Ga0466960_0061241 3300044901 Bacteria 1847
122 Ga0466960_0188946 3300044901 Bacteria 1120
123 Ga0466960_0202200 3300044901 Bacteria 1086
124 Ga0466959_0056922 3300045049 Bacteria 2852
125 Ga0466959_0071764 3300045049 Bacteria 2507
126 Ga0466959_0096144 3300045049 Bacteria 2124
127 Ga0466959_0318094 3300045049 Bacteria 1064
128 Ga0466958_0068723 3300045836 Bacteria 2166
129 Ga0466958_0145534 3300045836 Bacteria 1493
130 Ga0466958_0228082 3300045836 Bacteria 1189
131 Ga0466967_0000780 3300045976 Bacteria 16565
132 Ga0466967_0039994 3300045976 Bacteria 4035
133 Ga0466967_0061096 3300045976 Bacteria 3342
134 Ga0466967_0085491 3300045976 Bacteria 2856
135 Ga0466967_0267827 3300045976 Bacteria 1636
136 Ga0466967_0406732 3300045976 Bacteria 1325
137 Ga0495582_0243092 3300046473 Bacteria 1032
138 Ga0495581_0255929 3300047315 Bacteria 1024
139 Ga0495676_0116939 3300047321 Bacteria 1946
140 Ga0496106_0522335 3300048909 Bacteria 953
141 Ga0496108_0000017 3300048911 Bacteria 235428
142 Ga0496114_0000871 3300048917 Bacteria 22565
143 Ga0501031_0037368 3300049568 Bacteria 3169
144 Ga0501031_0140576 3300049568 Bacteria 1578
145 Ga0501033_0024320 3300049570 Bacteria 4570
146 Ga0501039_0120457 3300049575 Bacteria 2056
147 Ga0501040_0109755 3300049576 Bacteria 1929
148 Ga0501040_0380431 3300049576 Bacteria 1013
149 Ga0501041_0008466 3300049577 Bacteria 6052
150 Ga0501041_0311859 3300049577 Bacteria 992
151 Ga0501046_0208861 3300049580 Bacteria 1450
152 Ga0501048_0173319 3300049582 Bacteria 1529
153 Ga0501071_0096244 3300049587 Bacteria 2179
154 Ga0501072_0064930 3300049588 Bacteria 2878
155 Ga0501044_0000319 3300049823 Bacteria 60713
156 Ga0501045_0387144 3300049824 Bacteria 1041
157 nmdc:mga05p37_137855_c1 3300050507 Bacteria 2991
158 nmdc:mga09592_287834_c1 3300050508 Bacteria 1425
159 nmdc:mga0qj67_144937_c1 3300050509 Bacteria 1925
160 nmdc:mga0qj67_487753_c1 3300050509 Bacteria 991
161 nmdc:mga06r32_141585_c1 3300050510 Bacteria 2381
162 nmdc:mga06r32_65892_c1 3300050510 Bacteria 3495
163 nmdc:mga08y16_302391_c1 3300050511 Bacteria 1649
164 nmdc:mga08y16_93797_c1 3300050511 Bacteria 3127
165 Ga0501084_0206712 3300054114 Bacteria 1657
166 Ga0590075_014714 3300059424 Bacteria 1915
167 Ga0501082_0009570 3300060353 Bacteria 8340
168 Ga0466962_0106889 3300061719 Bacteria 1346
169 Ga0466962_0121364 3300061719 Bacteria 1261
170 2671834913 2671180195 Bacteria 9757215
171 2623499644 2622736605 Bacteria 4992138
172 2676479936 2675903059 Bacteria 8644972
173 2689993874 2687453743 Bacteria 8361025
174 2774853069 2773857922 Bacteria 9757215
175 2816423816 2816332119 Bacteria 8120218
176 2832004907 2832004796 Bacteria 6538017
177 2866068528 2866065130 Bacteria 6518152
178 2867512667 2867507094 Bacteria 6506033
179 8002782986 8002775197 Bacteria 10728764
180 JGI25406J46586_10001109
181 Ga0070683_100463908
182 Ga0070680_100212319
183 Ga0070682_100448926
184 Ga0070660_100640448
185 Ga0070668_100000179
186 Ga0070700_100000094
187 Ga0070708_100000274
188 Ga0070708_100043541
189 Ga0070681_10348995
190 Ga0070706_100172915
191 Ga0070707_100098713
192 Ga0070707_100349236
193 Ga0070698_100502040
194 Ga0070696_100174884
195 Ga0070665_100251750
196 Ga0081538_10000748
197 Ga0081539_10000173
198 Ga0081539_10000780
199 Ga0081539_10003466
200 Ga0081539_10011681
201 Ga0081539_10022098
202 Ga0081539_10025566
203 Ga0081539_10075953
204 Ga0081539_10142957
205 Ga0081539_10145616
206 Ga0075428_100001953
207 Ga0075430_100447290
208 Ga0075431_100138363
209 Ga0075431_100151908
210 Ga0111539_10142154
211 Ga0111539_10232313
212 Ga0114129_10035399
213 Ga0105238_10127602
214 Ga0157369_10049795
215 Ga0157369_10107450
216 Ga0163163_10114810
217 Ga0197907_11086050
218 Ga0206353_10684051
219 Ga0206353_11633059
220 Ga0207684_10258918
221 Ga0207657_10422078
222 Ga0207652_10031671
223 Ga0207652_10081994
224 Ga0207646_10104925
225 Ga0207668_10000973
226 Ga0207708_10000123
227 Ga0207683_10033667
228 Ga0207428_10060681
229 Ga0265334_10002666
230 Ga0307513_10025116
231 Ga0307513_10247679
232 Ga0307413_10033020
233 Ga0307413_10462832
234 Ga0307410_10063145
235 Ga0307410_10075919
236 Ga0307410_10099896
237 Ga0307410_10171454
238 Ga0307410_10188082
239 Ga0326468_10000898
240 Ga0307406_10018845
241 Ga0307406_10027420
242 Ga0307406_10036535
243 Ga0307406_10056337
244 Ga0307406_10122448
245 Ga0307406_10347224
246 Ga0307406_10410150
247 Ga0307407_10011765
248 Ga0307407_10012574
249 Ga0307407_10017286
250 Ga0307407_10098409
251 Ga0307407_10302763
252 Ga0307407_10315899
253 Ga0307412_10159533
254 Ga0307409_100019080
255 Ga0307409_100019253
256 Ga0307409_100078173
257 Ga0307409_100159053
258 Ga0307409_100229726
259 Ga0307409_100236581
260 Ga0307409_100272900
261 Ga0307409_100497130
262 Ga0307409_100571923
263 Ga0307409_100733916
264 Ga0307416_100004899
265 Ga0307416_100087729
266 Ga0307416_100667650
267 Ga0307416_100835468
268 Ga0307414_10322566
269 Ga0307414_10435346
270 Ga0307411_10019020
271 Ga0307411_10091998
272 Ga0307411_10606748
273 Ga0307415_100039428
274 Ga0307415_100048405
275 Ga0307415_100080319
276 Ga0307415_100122945
277 Ga0307415_100158260
278 Ga0307415_100250051
279 Ga0307415_100278818
280 Ga0307415_100388079
281 Ga0307415_100480787
282 Ga0395900_0108076
283 Ga0395898_0081190
284 Ga0395898_0177239
285 Ga0436364_0751711
286 Ga0466972_0134380
287 Ga0466961_0023884
288 Ga0466963_0088806
289 Ga0466963_0251987
290 Ga0466964_0167775
291 Ga0466964_0188219
292 Ga0466970_0010163
293 Ga0466970_0028426
294 Ga0466970_0157330
295 Ga0466957_0046008
296 Ga0466957_0074947
297 Ga0466957_0108843
298 Ga0466957_0427355
299 Ga0466960_0007373
300 Ga0466960_0061241
301 Ga0466960_0188946
302 Ga0466960_0202200
303 Ga0466959_0056922
304 Ga0466959_0071764
305 Ga0466959_0096144
306 Ga0466959_0318094
307 Ga0466958_0068723
308 Ga0466958_0145534
309 Ga0466958_0228082
310 Ga0466967_0000780
311 Ga0466967_0039994
312 Ga0466967_0061096
313 Ga0466967_0085491
314 Ga0466967_0267827
315 Ga0466967_0406732
316 Ga0495582_0243092
317 Ga0495581_0255929
318 Ga0495676_0116939
319 Ga0496106_0522335
320 Ga0496108_0000017
321 Ga0496114_0000871
322 Ga0501031_0037368
323 Ga0501031_0140576
324 Ga0501033_0024320
325 Ga0501039_0120457
326 Ga0501040_0109755
327 Ga0501040_0380431
328 Ga0501041_0008466
329 Ga0501041_0311859
330 Ga0501046_0208861
331 Ga0501048_0173319
332 Ga0501071_0096244
333 Ga0501072_0064930
334 Ga0501044_0000319
335 Ga0501045_0387144
336 nmdc:mga05p37_137855_c1
337 nmdc:mga09592_287834_c1
338 nmdc:mga0qj67_144937_c1
339 nmdc:mga0qj67_487753_c1
340 nmdc:mga06r32_141585_c1
341 nmdc:mga06r32_65892_c1
342 nmdc:mga08y16_302391_c1
343 nmdc:mga08y16_93797_c1
344 Ga0501084_0206712
345 Ga0590075_014714
346 Ga0501082_0009570
347 Ga0466962_0106889
348 Ga0466962_0121364
349 2671834913
350 2623499644
351 2676479936
352 2689993874
353 2774853069
354 2816423816
355 2832004907
356 2866068528
357 2867512667
358 8002782986

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12679

ABC2_membrane_2

ABC-2 family transporter protein

41

319

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
8wbx-assembly1.cif.gz_B cryo-em structure of the abcg25 bound to aba 0.7382 17 303
8wba-assembly1.cif.gz_A cryo-em structure of the abcg25 bound to chs 0.724 19 303
7o16-assembly1.cif.gz_D abc transporter nosdfy, nucleotide-free in lipid nanodisc, r-domain 3 0.7226 25 303
7o16-assembly1.cif.gz_D abc transporter nosdfy, nucleotide-free in lipid nanodisc, r-domain 3 0.718 25 303
8i39-assembly1.cif.gz_B cryo-em structure of abscisic acid transporter atabcg25 with aba 0.7122 19 303
ID Description Score Start End Superfamily
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6988 93 299 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6796 80 293 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6794 91 299 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.4617 93 299 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.453 91 299 3.40.1710.10
ID Description Score Start End GO Terms
AF-A0A535KU70-F1-model_v4 ABC transporter permease 0.9815 85 305 GO:0005886
GO:0140359
AF-A0A535F035-F1-model_v4 ABC transporter permease 0.9774 96 305 GO:0005886
GO:0140359
AF-A0A535J8W3-F1-model_v4 ABC transporter permease 0.9715 99 305 GO:0005886
GO:0140359
AF-A0A1Q7HVQ6-F1-model_v4 ABC transporter permease 0.9701 27 305 GO:0005886
GO:0140359
AF-A0A1Q7HVQ6-F1-model_v4 ABC transporter permease 0.9632 27 305 GO:0005886
GO:0140359

Map