F273885

General Info

Members Datasets Scaffolds Average Seq Length
179 95 358 532

Family's Representative Sequence

Representative Sequence 3300020080|Ga0206350_10880461|Ga0206350_108804611
Length 552
Sequence VAKRLQFDEQARQSLKKGMDTLAGAVKVTLGPKGRNVVLDKKFGAPTITNDGVTIAREIDLPDPFENMGAQLIKEVATKTNDVAGDGTTTATVLAQAIITEGLKNLAAGANPMILRRGLEKGVEAIVAEIKSMSKQIETQEEIAQVAAISAADPEIGSLIAEVMDKVGKDGVITVEEGRGLATEREYTEGMQFDRGYISAYMATNMERMEADLSNPFILITDKKISAITDILPVLEKVMQSGRKELVIIAEDIDGEALATLVVNRMRGTFNVLGVKAPGFGDRREAMLEDIAILTGGKVITEKAGLKLDAATLSDLGSARTVTSTKDNTTIVEGAGSSEDIQARVRQIRAQIQDTTSDYDREKLQERLAKLAGGVGVIKVGAATEVELKEKKHRVEDALSATRAAIEEGIIPGGGVSLVDAIPALDKVQVAAGDEQTGLNILRRALQEPLRQIAFNAGKDGAVVVNQVATSARGVGFDALNSEFVDMFKAGIIDPAKVTRSALQNAASIASMFLTTDTLITDSPDEEAAGDFGANGMDLGGDQGDLPKVESA

Samples

Sample ID Description Type Environment
1 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
2 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
3 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
34 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
53 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
54 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
55 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
56 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
57 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
58 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
61 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
62 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
63 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
64 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
65 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
66 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
67 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
70 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
71 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
74 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
75 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
80 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
81 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
82 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
83 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
84 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
87 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
88 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
89 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
90 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
91 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
95 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 63.69
Metatranscriptomes 35.75
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.12
Rhizosphere 92.18
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0206350_10880461 3300020080 Bacteria 2181
2 Ga0058860_12177690 3300004801 Bacteria 2147
3 Ga0058862_12457855 3300004803 Bacteria 1949
4 Ga0058862_12798371 3300004803 Bacteria 2144
5 Ga0065712_10076337 3300005290 Bacteria 3681
6 Ga0065715_10105790 3300005293 Bacteria 2871
7 Ga0070674_100024701 3300005356 Bacteria 3904
8 Ga0070708_100001568 3300005445 Bacteria 17523
9 Ga0070708_100008772 3300005445 Bacteria 8128
10 Ga0070706_100000089 3300005467 Bacteria 107706
11 Ga0070706_100001383 3300005467 Bacteria 25747
12 Ga0070706_100006377 3300005467 Bacteria 11142
13 Ga0070706_100029840 3300005467 Bacteria 5023
14 Ga0070707_100001048 3300005468 Bacteria 27384
15 Ga0070707_100011420 3300005468 Bacteria 8281
16 Ga0070707_100049888 3300005468 Bacteria 4012
17 Ga0070707_100057757 3300005468 Bacteria 3722
18 Ga0070707_100077176 3300005468 Bacteria 3214
19 Ga0070707_100158496 3300005468 Bacteria 2205
20 Ga0070698_100075532 3300005471 Bacteria 3374
21 Ga0070698_100135720 3300005471 Bacteria 2414
22 Ga0070698_100196665 3300005471 Bacteria 1953
23 Ga0070699_100002659 3300005518 Bacteria 15959
24 Ga0070699_100051740 3300005518 Bacteria 3557
25 Ga0070699_100059189 3300005518 Bacteria 3319
26 Ga0070679_100018001 3300005530 Bacteria 6848
27 Ga0070684_100059989 3300005535 Bacteria 3326
28 Ga0070697_100004083 3300005536 Bacteria 11196
29 Ga0070697_100055678 3300005536 Bacteria 3216
30 Ga0070693_100031238 3300005547 Bacteria 2917
31 Ga0068857_100003578 3300005577 Bacteria 13000
32 Ga0068856_100071962 3300005614 Bacteria 3423
33 Ga0070702_100000716 3300005615 Bacteria 12568
34 Ga0070717_10005820 3300006028 Bacteria 9028
35 Ga0070716_100004345 3300006173 Bacteria 6764
36 Ga0075431_100063583 3300006847 Bacteria 3808
37 Ga0075433_10063590 3300006852 Bacteria 3233
38 Ga0075434_100060853 3300006871 Bacteria 3756
39 Ga0075429_100000730 3300006880 Bacteria 25796
40 Ga0075435_100064169 3300007076 Bacteria 2983
41 Ga0099795_10023576 3300007788 Bacteria 2043
42 Ga0114129_10231688 3300009147 Bacteria 2487
43 Ga0157378_10008123 3300013297 Bacteria 9158
44 Ga0157375_10035253 3300013308 Bacteria 4774
45 Ga0197907_10101607 3300020069 Bacteria 2039
46 Ga0197907_10651679 3300020069 Bacteria 2066
47 Ga0197907_11163418 3300020069 Bacteria 2018
48 Ga0197907_11459842 3300020069 Bacteria 1732
49 Ga0206356_10572554 3300020070 Bacteria 1709
50 Ga0206356_11191223 3300020070 Bacteria 2064
51 Ga0206356_11528851 3300020070 Bacteria 1705
52 Ga0206349_1139006 3300020075 Bacteria 2081
53 Ga0206349_1482547 3300020075 Bacteria 1898
54 Ga0206349_1547425 3300020075 Bacteria 2127
55 Ga0206355_1162768 3300020076 Bacteria 2201
56 Ga0206355_1704489 3300020076 Bacteria 2352
57 Ga0206351_10154813 3300020077 Bacteria 2067
58 Ga0206351_10218173 3300020077 Bacteria 2264
59 Ga0206351_10246696 3300020077 Bacteria 2120
60 Ga0206351_10325334 3300020077 Bacteria 1785
61 Ga0206351_10366977 3300020077 Bacteria 1860
62 Ga0206351_10510400 3300020077 Bacteria 2111
63 Ga0206351_10528195 3300020077 Bacteria 2072
64 Ga0206351_10604346 3300020077 Bacteria 2073
65 Ga0206351_10808611 3300020077 Bacteria 2197
66 Ga0206352_10644898 3300020078 Bacteria 1719
67 Ga0206352_10689263 3300020078 Bacteria 2243
68 Ga0206352_10699950 3300020078 Bacteria 6969
69 Ga0206350_10390748 3300020080 Bacteria 1688
70 Ga0206350_10475438 3300020080 Bacteria 2866
71 Ga0206350_10892636 3300020080 Bacteria 2059
72 Ga0206350_10956540 3300020080 Bacteria 2142
73 Ga0206354_10310196 3300020081 Bacteria 2068
74 Ga0206354_10490123 3300020081 Bacteria 2357
75 Ga0206354_11123154 3300020081 Bacteria 2083
76 Ga0206354_11626792 3300020081 Bacteria 2055
77 Ga0206353_11093041 3300020082 Bacteria 2516
78 Ga0154015_1179643 3300020610 Bacteria 2356
79 Ga0154015_1366506 3300020610 Bacteria 2005
80 Ga0154015_1552973 3300020610 Bacteria 1779
81 Ga0154015_1696529 3300020610 Bacteria 2053
82 Ga0213876_10004108 3300021384 Bacteria 8177
83 Ga0213876_10016403 3300021384 Bacteria 3916
84 Ga0224712_10001882 3300022467 Bacteria 5046
85 Ga0224712_10003060 3300022467 Bacteria 4266
86 Ga0224712_10003364 3300022467 Bacteria 4145
87 Ga0224712_10007040 3300022467 Bacteria 3249
88 Ga0224712_10010974 3300022467 Bacteria 2791
89 Ga0224712_10011921 3300022467 Bacteria 2714
90 Ga0224712_10014992 3300022467 Bacteria 2512
91 Ga0224712_10019117 3300022467 Bacteria 2304
92 Ga0224712_10019730 3300022467 Bacteria 2278
93 Ga0224712_10019748 3300022467 Bacteria 2277
94 Ga0224712_10021987 3300022467 Bacteria 2192
95 Ga0224712_10022036 3300022467 Bacteria 2190
96 Ga0224712_10022043 3300022467 Bacteria 2190
97 Ga0224712_10024754 3300022467 Bacteria 2101
98 Ga0224712_10024922 3300022467 Bacteria 2096
99 Ga0224712_10025558 3300022467 Bacteria 2077
100 Ga0224712_10025661 3300022467 Bacteria 2074
101 Ga0224712_10026688 3300022467 Bacteria 2045
102 Ga0224712_10032262 3300022467 Bacteria 1907
103 Ga0224712_10038954 3300022467 Bacteria 1779
104 Ga0224712_10039363 3300022467 Bacteria 1772
105 Ga0207653_10004390 3300025885 Bacteria 4424
106 Ga0207684_10000106 3300025910 Bacteria 158041
107 Ga0207684_10000137 3300025910 Bacteria 132561
108 Ga0207684_10000522 3300025910 Bacteria 47590
109 Ga0207684_10020023 3300025910 Bacteria 5717
110 Ga0207684_10027067 3300025910 Bacteria 4890
111 Ga0207693_10032784 3300025915 Bacteria 4100
112 Ga0207652_10013127 3300025921 Bacteria 6707
113 Ga0207646_10000023 3300025922 Bacteria 255171
114 Ga0207646_10000395 3300025922 Bacteria 58592
115 Ga0207646_10042757 3300025922 Bacteria 4070
116 Ga0207709_10048280 3300025935 Bacteria 2593
117 Ga0207689_10055551 3300025942 Bacteria 3259
118 Ga0207708_10087231 3300026075 Bacteria 2402
119 Ga0207674_10006975 3300026116 Bacteria 13224
120 Ga0207674_10025649 3300026116 Bacteria 6279
121 Ga0207674_10036989 3300026116 Bacteria 5080
122 Ga0265320_10010422 3300031240 Bacteria 5539
123 Ga0265316_10004182 3300031344 Bacteria 14424
124 Ga0265316_10041235 3300031344 Bacteria 3696
125 Ga0316593_10018133 3300032168 Bacteria 2158
126 Ga0373954_0006021 3300035118 Bacteria 5276
127 Ga0373956_0000214 3300035119 Bacteria 22735
128 Ga0373927_0000096 3300035695 Bacteria 66297
129 Ga0373933_0049441 3300035724 Bacteria 2507
130 Ga0316582_0086251 3300036647 Bacteria 2058
131 Ga0316584_0095551 3300036712 Bacteria 2225
132 Ga0436364_0809757 3300037853 Bacteria 3086
133 Ga0436364_1509894 3300037853 Bacteria 14558
134 Ga0400489_58695 3300039093 Bacteria 4172
135 Ga0436365_0621768 3300039437 Bacteria 14235
136 Ga0436365_1086890 3300039437 Bacteria 5033
137 Ga0436365_1431743 3300039437 Bacteria 29560
138 Ga0436363_1036923 3300039450 Bacteria 7869
139 Ga0451839_0475896 3300041496 Bacteria 1666
140 Ga0466969_0000816 3300044656 Bacteria 16924
141 Ga0466972_0002403 3300044658 Bacteria 9230
142 Ga0466972_0027243 3300044658 Bacteria 2828
143 Ga0466966_0000260 3300044684 Bacteria 35160
144 Ga0466964_0000204 3300044706 Bacteria 16673
145 Ga0453684_0006088 3300044712 Bacteria 23270
146 Ga0453684_0034653 3300044712 Bacteria 6999
147 Ga0466968_0000058 3300044735 Bacteria 32680
148 Ga0466970_0000028 3300044765 Bacteria 54652
149 Ga0466959_0002408 3300045049 Bacteria 11940
150 Ga0451576_0000038 3300045051 Bacteria 369709
151 Ga0451576_0010644 3300045051 Bacteria 10537
152 Ga0496110_0201644 3300048913 Bacteria 1808
153 Ga0496115_0000897 3300048918 Bacteria 21606
154 Ga0501034_0031372 3300049571 Bacteria 5398
155 Ga0501037_0009692 3300049573 Bacteria 7069
156 Ga0501038_0109605 3300049574 Bacteria 2287
157 Ga0501047_0047023 3300049581 Bacteria 4170
158 Ga0501069_0021694 3300049585 Bacteria 3489
159 Ga0501072_0040061 3300049588 Bacteria 3679
160 Ga0501073_0007345 3300049589 Bacteria 8199
161 Ga0501076_0036550 3300049592 Bacteria 3849
162 Ga0501079_0025153 3300049741 Bacteria 4567
163 Ga0501079_0081719 3300049741 Bacteria 2499
164 Ga0501081_0097081 3300049743 Bacteria 2079
165 Ga0501044_0019026 3300049823 Bacteria 7353
166 nmdc:mga05p37_21083_c1 3300050507 Bacteria 7888
167 nmdc:mga05p37_42817_c1 3300050507 Bacteria 5566
168 nmdc:mga05p37_49003_c1 3300050507 Bacteria 5195
169 nmdc:mga05p37_5487_c1 3300050507 Bacteria 14898
170 nmdc:mga0n895_49529_c1 3300050512 Bacteria 4116
171 nmdc:mga0rr50_31889_c1 3300050513 Bacteria 3747
172 nmdc:mga0a205_19408_c1 3300050515 Bacteria 6408
173 nmdc:mga0a205_63028_c1 3300050515 Bacteria 3582
174 Ga0495601_0060981 3300053077 Bacteria 2394
175 Ga0495619_0020916 3300053085 Bacteria 4173
176 Ga0501084_0104965 3300054114 Bacteria 2373
177 Ga0587083_0006533 3300059505 Bacteria 1742
178 Ga0530510_0021122 3300061734 Bacteria 4631
179 2857712419 2857710386 Bacteria 3186771
180 Ga0206350_10880461
181 Ga0058860_12177690
182 Ga0058862_12457855
183 Ga0058862_12798371
184 Ga0065712_10076337
185 Ga0065715_10105790
186 Ga0070674_100024701
187 Ga0070708_100001568
188 Ga0070708_100008772
189 Ga0070706_100000089
190 Ga0070706_100001383
191 Ga0070706_100006377
192 Ga0070706_100029840
193 Ga0070707_100001048
194 Ga0070707_100011420
195 Ga0070707_100049888
196 Ga0070707_100057757
197 Ga0070707_100077176
198 Ga0070707_100158496
199 Ga0070698_100075532
200 Ga0070698_100135720
201 Ga0070698_100196665
202 Ga0070699_100002659
203 Ga0070699_100051740
204 Ga0070699_100059189
205 Ga0070679_100018001
206 Ga0070684_100059989
207 Ga0070697_100004083
208 Ga0070697_100055678
209 Ga0070693_100031238
210 Ga0068857_100003578
211 Ga0068856_100071962
212 Ga0070702_100000716
213 Ga0070717_10005820
214 Ga0070716_100004345
215 Ga0075431_100063583
216 Ga0075433_10063590
217 Ga0075434_100060853
218 Ga0075429_100000730
219 Ga0075435_100064169
220 Ga0099795_10023576
221 Ga0114129_10231688
222 Ga0157378_10008123
223 Ga0157375_10035253
224 Ga0197907_10101607
225 Ga0197907_10651679
226 Ga0197907_11163418
227 Ga0197907_11459842
228 Ga0206356_10572554
229 Ga0206356_11191223
230 Ga0206356_11528851
231 Ga0206349_1139006
232 Ga0206349_1482547
233 Ga0206349_1547425
234 Ga0206355_1162768
235 Ga0206355_1704489
236 Ga0206351_10154813
237 Ga0206351_10218173
238 Ga0206351_10246696
239 Ga0206351_10325334
240 Ga0206351_10366977
241 Ga0206351_10510400
242 Ga0206351_10528195
243 Ga0206351_10604346
244 Ga0206351_10808611
245 Ga0206352_10644898
246 Ga0206352_10689263
247 Ga0206352_10699950
248 Ga0206350_10390748
249 Ga0206350_10475438
250 Ga0206350_10892636
251 Ga0206350_10956540
252 Ga0206354_10310196
253 Ga0206354_10490123
254 Ga0206354_11123154
255 Ga0206354_11626792
256 Ga0206353_11093041
257 Ga0154015_1179643
258 Ga0154015_1366506
259 Ga0154015_1552973
260 Ga0154015_1696529
261 Ga0213876_10004108
262 Ga0213876_10016403
263 Ga0224712_10001882
264 Ga0224712_10003060
265 Ga0224712_10003364
266 Ga0224712_10007040
267 Ga0224712_10010974
268 Ga0224712_10011921
269 Ga0224712_10014992
270 Ga0224712_10019117
271 Ga0224712_10019730
272 Ga0224712_10019748
273 Ga0224712_10021987
274 Ga0224712_10022036
275 Ga0224712_10022043
276 Ga0224712_10024754
277 Ga0224712_10024922
278 Ga0224712_10025558
279 Ga0224712_10025661
280 Ga0224712_10026688
281 Ga0224712_10032262
282 Ga0224712_10038954
283 Ga0224712_10039363
284 Ga0207653_10004390
285 Ga0207684_10000106
286 Ga0207684_10000137
287 Ga0207684_10000522
288 Ga0207684_10020023
289 Ga0207684_10027067
290 Ga0207693_10032784
291 Ga0207652_10013127
292 Ga0207646_10000023
293 Ga0207646_10000395
294 Ga0207646_10042757
295 Ga0207709_10048280
296 Ga0207689_10055551
297 Ga0207708_10087231
298 Ga0207674_10006975
299 Ga0207674_10025649
300 Ga0207674_10036989
301 Ga0265320_10010422
302 Ga0265316_10004182
303 Ga0265316_10041235
304 Ga0316593_10018133
305 Ga0373954_0006021
306 Ga0373956_0000214
307 Ga0373927_0000096
308 Ga0373933_0049441
309 Ga0316582_0086251
310 Ga0316584_0095551
311 Ga0436364_0809757
312 Ga0436364_1509894
313 Ga0400489_58695
314 Ga0436365_0621768
315 Ga0436365_1086890
316 Ga0436365_1431743
317 Ga0436363_1036923
318 Ga0451839_0475896
319 Ga0466969_0000816
320 Ga0466972_0002403
321 Ga0466972_0027243
322 Ga0466966_0000260
323 Ga0466964_0000204
324 Ga0453684_0006088
325 Ga0453684_0034653
326 Ga0466968_0000058
327 Ga0466970_0000028
328 Ga0466959_0002408
329 Ga0451576_0000038
330 Ga0451576_0010644
331 Ga0496110_0201644
332 Ga0496115_0000897
333 Ga0501034_0031372
334 Ga0501037_0009692
335 Ga0501038_0109605
336 Ga0501047_0047023
337 Ga0501069_0021694
338 Ga0501072_0040061
339 Ga0501073_0007345
340 Ga0501076_0036550
341 Ga0501079_0025153
342 Ga0501079_0081719
343 Ga0501081_0097081
344 Ga0501044_0019026
345 nmdc:mga05p37_21083_c1
346 nmdc:mga05p37_42817_c1
347 nmdc:mga05p37_49003_c1
348 nmdc:mga05p37_5487_c1
349 nmdc:mga0n895_49529_c1
350 nmdc:mga0rr50_31889_c1
351 nmdc:mga0a205_19408_c1
352 nmdc:mga0a205_63028_c1
353 Ga0495601_0060981
354 Ga0495619_0020916
355 Ga0501084_0104965
356 Ga0587083_0006533
357 Ga0530510_0021122
358 2857712419

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00118

Cpn60_TCP1

TCP-1/cpn60 chaperonin family

22

524

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1srv-assembly1.cif.gz_A thermus thermophilus groel (hsp60 class) fragment (apical domain) comprising residues 192-336 0.9841 192 335
1dkd-assembly1.cif.gz_A crystal structure of a groel (apical domain) and a dodecameric peptide complex 0.9815 189 334
1jon-assembly1.cif.gz_A groel (hsp60 class) fragment comprising residues 191-345 0.9812 189 334
3vz8-assembly3.cif.gz_C crystal structure analysis of the mini-chaperonin variant with leu 185, val 186, pro 187, arg 188 and ser 190 replaced with all gly 0.9767 191 375
1dkd-assembly1.cif.gz_A crystal structure of a groel (apical domain) and a dodecameric peptide complex 0.9683 189 334
ID Description Score Start End Superfamily
af_P0A6F5_19_130_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9947 19 128 1.10.560.10
af_I1KGB8_42_158_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9868 12 126 1.10.560.10
3rtkB03 Alpha Beta;3-Layer(bba) Sandwich;GroEL;GroEL 0.9816 189 374 3.50.7.10
1jonA00 Alpha Beta;3-Layer(bba) Sandwich;GroEL;GroEL 0.9812 189 334 3.50.7.10
af_I1LR60_454_559_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9806 411 513 1.10.560.10
ID Description Score Start End GO Terms
AF-A0A3D1H3Q0-F1-model_v4 60 kDa chaperonin 0.9901 193 394 GO:0005524
GO:0042026
GO:0140662
AF-A0A3C1CMQ7-F1-model_v4 Molecular chaperone GroEL 0.9894 211 357 GO:0042026
GO:0140662
AF-X2JCT1-F1-model_v4 GroEL 0.9887 211 322 GO:0042026
GO:0140662
AF-A0A3B9DJN9-F1-model_v4 deleted 0.9883 189 411
AF-X1JH53-F1-model_v4 60 kDa chaperonin 0.9872 220 390 GO:0005524
GO:0042026
GO:0140662

Map