F268880

General Info

Members Datasets Scaffolds Average Seq Length
176 145 156 381

Family's Representative Sequence

Representative Sequence 3300046530|Ga0495654_0015105|Ga0495654_0015105_2712_3920
Length 402
Sequence MSRTLHLTEQLISRHSVTPEDAHCQKIIAERLKPLGFVFETVESGPDDFRVTNLWAIRKGFGPSEAAALTSNVAPVETKLLVFAGHTDVVPTGPLDQWTSDPFTPTHRDGKLFGRGTSDMKTSIAAFVVAVEEFVAKHPESYLSIALLLTSDEEGPATDGTVIMCDWLQQHGEQIDYCIVGEPTSVLRTGDMIKNGRRGTMGGKLTVKGVQGHIAYPQLAKNPVHLALPALTELAAISWDEGNAFFQPTSWQISNIHSGTGATNVIPGTAVVDFNFRFSTASTSDGLQKRVNEVLDRHGLDYTLAWTVGGQPFLTTPGDLVDTVRAAIRDETGLETELSTTGGTSDGRFIAKICPQVIELGPPNATIHKIDEHIALTDIEPLKNIYRRVLELLDAQLQPKLG

Samples

Sample ID Description Type Environment
1 2547132374 Acidovorax radicis N35 Isolate Unclassified
2 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
3 2643221554 Duganella sp. Root1480D1 Isolate Unclassified
4 2643221570 Acidovorax sp. Root568 Isolate Unclassified
5 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
6 2643221652 Acidovorax sp. Root402 Isolate Unclassified
7 2643221717 Acidovorax sp. Root267 Isolate Unclassified
8 2721755523 Delftia sp. HK171 Isolate Unclassified
9 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
10 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
11 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
12 2842747753 Variovorax sp. R-72060 Isolate Unclassified
13 2857564685 Duganella sp. R-74599 Isolate Unclassified
14 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
15 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
16 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
17 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
18 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
19 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
20 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
21 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
22 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
23 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
24 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
25 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
26 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
27 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
28 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
29 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
30 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
31 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
32 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
33 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
61 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
62 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
84 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
85 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
86 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
87 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
88 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
89 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
90 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
91 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
94 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
95 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
96 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
101 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
102 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
106 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
107 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
108 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
109 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
110 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
111 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
112 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
113 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
114 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
115 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
116 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
117 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
118 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
119 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
120 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
121 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
122 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
123 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
124 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
125 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
126 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
127 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
128 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
131 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
132 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
141 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
142 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
143 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
144 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
145 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.64
Metatranscriptomes 0
Isolates 11.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.68
Nodule 1.7
Rhizoplane 3.41
Rhizosphere 75.57
Stem 0
Stem Tuber 0
Unclassified 13.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25150J39212_1002383 3300002774 Bacteria 4708
2 JGI25161J50226_1007510 3300003374 Bacteria 1818
3 Ga0070676_10018695 3300005328 Bacteria 3843
4 Ga0070670_100185054 3300005331 Bacteria 1809
5 Ga0068868_100046149 3300005338 Bacteria 3411
6 Ga0070668_100062962 3300005347 Bacteria 2875
7 Ga0070675_100106080 3300005354 Bacteria 2371
8 Ga0070673_100056301 3300005364 Bacteria 3102
9 Ga0070667_100052823 3300005367 Bacteria 3429
10 Ga0070714_100370082 3300005435 Bacteria 1349
11 Ga0070711_100181680 3300005439 Bacteria 1611
12 Ga0070678_100104318 3300005456 Bacteria 2204
13 Ga0068867_100000047 3300005459 Bacteria 74014
14 Ga0070679_100073514 3300005530 Bacteria 3410
15 Ga0070664_100060354 3300005564 Bacteria 3229
16 Ga0068857_100063455 3300005577 Bacteria 3284
17 Ga0068859_100031426 3300005617 Bacteria 5333
18 Ga0068859_100052472 3300005617 Bacteria 4099
19 Ga0068859_100155109 3300005617 Bacteria 2367
20 Ga0068863_100162507 3300005841 Bacteria 2140
21 Ga0068858_100031036 3300005842 Bacteria 4962
22 Ga0068860_100003439 3300005843 Bacteria 16286
23 Ga0075364_10059101 3300006051 Bacteria 2513
24 Ga0075367_10102769 3300006178 Bacteria 1748
25 Ga0068871_100124246 3300006358 Bacteria 2183
26 Ga0075429_100026463 3300006880 Bacteria 5037
27 Ga0068865_100012259 3300006881 Bacteria 5392
28 Ga0097620_100031426 3300006931 Bacteria 5333
29 Ga0097620_100052470 3300006931 Bacteria 4099
30 Ga0097620_100155113 3300006931 Bacteria 2367
31 Ga0079104_1000051 3300006946 Bacteria 171217
32 Ga0105243_10001168 3300009148 Bacteria 23807
33 Ga0105243_10016919 3300009148 Bacteria 5514
34 Ga0105242_10021310 3300009176 Bacteria 5085
35 Ga0105248_10066385 3300009177 Bacteria 4051
36 Ga0105249_10027329 3300009553 Bacteria 5148
37 Ga0157378_10007304 3300013297 Bacteria 9650
38 Ga0157378_10231229 3300013297 Bacteria 1762
39 Ga0163162_10019792 3300013306 Bacteria 6608
40 Ga0163162_10053389 3300013306 Bacteria 4062
41 Ga0163162_10100521 3300013306 Bacteria 2983
42 Ga0157375_10019475 3300013308 Bacteria 6173
43 Ga0163163_10032797 3300014325 Bacteria 5019
44 Ga0157380_10066069 3300014326 Bacteria 2908
45 Ga0157377_10000083 3300014745 Bacteria 73632
46 Ga0157379_10000983 3300014968 Bacteria 23126
47 Ga0157379_10079117 3300014968 Bacteria 2944
48 Ga0157376_10037619 3300014969 Bacteria 3931
49 Ga0182005_1014767 3300015265 Bacteria 2183
50 Ga0213872_10000028 3300021361 Bacteria 148766
51 Ga0213872_10029884 3300021361 Bacteria 2499
52 Ga0207680_10004826 3300025903 Bacteria 6413
53 Ga0207645_10005790 3300025907 Bacteria 8915
54 Ga0207654_10181846 3300025911 Bacteria 1372
55 Ga0207695_10007480 3300025913 Bacteria 13875
56 Ga0207652_10059540 3300025921 Bacteria 3292
57 Ga0207659_10062082 3300025926 Bacteria 2696
58 Ga0207664_10329489 3300025929 Bacteria 1348
59 Ga0207686_10009771 3300025934 Bacteria 5215
60 Ga0207709_10000241 3300025935 Bacteria 67520
61 Ga0207709_10008978 3300025935 Bacteria 5514
62 Ga0207711_10061829 3300025941 Bacteria 3229
63 Ga0207679_10231500 3300025945 Bacteria 1560
64 Ga0207651_10011235 3300025960 Bacteria 5004
65 Ga0207658_10014042 3300025986 Bacteria 5482
66 Ga0207641_10018455 3300026088 Bacteria 5719
67 Ga0207648_10000091 3300026089 Bacteria 85128
68 Ga0207674_10083218 3300026116 Bacteria 3200
69 Ga0207675_100005221 3300026118 Bacteria 12502
70 Ga0207683_10205862 3300026121 Bacteria 1789
71 Ga0207698_10103678 3300026142 Bacteria 2365
72 Ga0209281_1000005 3300027111 Bacteria 1242284
73 Ga0268264_10003080 3300028381 Bacteria 14434
74 Ga0307515_10000998 3300028794 Bacteria 64720
75 Ga0307515_10002860 3300028794 Bacteria 36720
76 Ga0307515_10018121 3300028794 Bacteria 12773
77 Ga0307515_10207534 3300028794 Bacteria 1814
78 Ga0316182_1442179 3300030745 Bacteria 2661
79 Ga0265330_10000059 3300031235 Bacteria 97975
80 Ga0265332_10000002 3300031238 Bacteria 709510
81 Ga0265332_10000094 3300031238 Bacteria 77636
82 Ga0265328_10049864 3300031239 Bacteria 1537
83 Ga0265325_10002927 3300031241 Bacteria 11380
84 Ga0265340_10006817 3300031247 Bacteria 6250
85 Ga0265327_10000309 3300031251 Bacteria 94387
86 Ga0265316_10137334 3300031344 Bacteria 1839
87 Ga0307513_10024236 3300031456 Bacteria 7064
88 Ga0307508_10000004 3300031616 Bacteria 287547
89 Ga0307514_10000225 3300031649 Bacteria 151002
90 Ga0307514_10021593 3300031649 Bacteria 5245
91 Ga0265314_10000012 3300031711 Bacteria 415184
92 Ga0265314_10009112 3300031711 Bacteria 8429
93 Ga0307516_10119303 3300031730 Bacteria 2431
94 Ga0307412_10070274 3300031911 Bacteria 2386
95 Ga0307416_100394705 3300032002 Bacteria 1419
96 Ga0373925_0006984 3300037068 Bacteria 8254
97 Ga0395899_0007810 3300037312 Bacteria 8250
98 Ga0395899_0014684 3300037312 Bacteria 5976
99 Ga0395900_0000054 3300037418 Bacteria 220487
100 Ga0395900_0013823 3300037418 Bacteria 8237
101 Ga0395900_0055675 3300037418 Bacteria 4072
102 Ga0395898_0000485 3300037466 Bacteria 78871
103 Ga0395898_0016949 3300037466 Bacteria 7439
104 Ga0395898_0052456 3300037466 Bacteria 3984
105 Ga0395905_0000148 3300037471 Bacteria 116301
106 Ga0395905_0011526 3300037471 Bacteria 8542
107 Ga0395905_0186964 3300037471 Bacteria 1944
108 Ga0395901_0024300 3300038443 Bacteria 6218
109 Ga0395901_0125091 3300038443 Bacteria 2702
110 Ga0436361_0420505 3300039447 Bacteria 103715
111 Ga0436361_1118930 3300039447 Bacteria 41703
112 Ga0439439_0012404 3300041406 Bacteria 2061
113 Ga0451800_0007392 3300041459 Bacteria 1963
114 Ga0439449_0009227 3300042007 Bacteria 3739
115 Ga0450893_0001333 3300042532 Bacteria 3751
116 Ga0451577_0005888 3300042876 Bacteria 12392
117 Ga0451577_0224717 3300042876 Bacteria 1697
118 Ga0466969_0004483 3300044656 Bacteria 7432
119 Ga0453683_0006618 3300044673 Bacteria 7938
120 Ga0453683_0015371 3300044673 Bacteria 4957
121 Ga0466966_0015372 3300044684 Bacteria 5061
122 Ga0466961_0071396 3300044693 Bacteria 2203
123 Ga0453684_0236503 3300044712 Bacteria 2105
124 Ga0466957_0064441 3300044842 Bacteria 2255
125 Ga0451576_0010569 3300045051 Bacteria 10572
126 Ga0495590_0065148 3300046457 Bacteria 1275
127 Ga0495653_0000002 3300046463 Bacteria 507262
128 Ga0495632_0039950 3300046519 Bacteria 2365
129 Ga0495654_0015105 3300046530 Bacteria 4104
130 Ga0495654_0085918 3300046530 Bacteria 1467
131 Ga0495621_0048312 3300046539 Bacteria 1515
132 Ga0495633_0000188 3300046558 Bacteria 80806
133 Ga0495633_0002428 3300046558 Bacteria 13176
134 Ga0495625_0006349 3300046660 Bacteria 10559
135 Ga0495588_0033451 3300046674 Bacteria 2596
136 Ga0495647_0016848 3300046681 Bacteria 2579
137 Ga0495686_0046141 3300047472 Bacteria 2756
138 Ga0496101_0026224 3300048904 Bacteria 4051
139 Ga0496102_0006323 3300048905 Bacteria 10100
140 Ga0496106_0132869 3300048909 Bacteria 1953
141 Ga0496107_0121937 3300048910 Bacteria 1921
142 Ga0496114_0251439 3300048917 Bacteria 1555
143 Ga0496122_0047175 3300048925 Bacteria 3328
144 Ga0496123_0013466 3300048926 Bacteria 6861
145 Ga0496125_0001032 3300048928 Bacteria 43195
146 Ga0501032_0187384 3300049569 Bacteria 1353
147 Ga0501080_0178240 3300049742 Bacteria 1957
148 Ga0501035_0044685 3300049822 Bacteria 3988
149 Ga0501044_0118676 3300049823 Bacteria 2648
150 nmdc:mga0yw44_60110_c1 3300050492 Bacteria 2327
151 nmdc:mga0k408_240665_c1 3300050493 Bacteria 1080
152 nmdc:mga0k408_25197_c1 3300050493 Bacteria 3368
153 Ga0500559_0006390 3300053136 Bacteria 5323
154 Ga0500573_0031216 3300053140 Bacteria 3075
155 Ga0500590_022039 3300053148 Bacteria 3307
156 Ga0590075_004148 3300059424 Bacteria 3431

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050493 nmdc:mga0k408_240665_c1 nmdc:mga0k408_240665_c1_44_1033 326
2 3300005439 Ga0070711_100181680 Ga0070711_1001816801 344
3 3300021361 Ga0213872_10000028 Ga0213872_1000002876 345
4 3300039447 Ga0436361_0420505 Ga0436361_0420505_74618_75751 345
5 3300046463 Ga0495653_0000002 Ga0495653_0000002_39740_40873 350
6 3300048925 Ga0496122_0047175 Ga0496122_0047175_1913_3046 350
7 3300048926 Ga0496123_0013466 Ga0496123_0013466_2884_4017 350
8 3300048928 Ga0496125_0001032 Ga0496125_0001032_2104_3231 353
9 3300005577 Ga0068857_100063455 Ga0068857_1000634552 355
10 3300026116 Ga0207674_10083218 Ga0207674_100832182 355
11 3300038443 Ga0395901_0125091 Ga0395901_0125091_628_1788 356
12 3300042532 Ga0450893_0001333 Ga0450893_0001333_2052_3227 357
13 3300006946 Ga0079104_1000051 Ga0079104_1000051151 358
14 3300009148 Ga0105243_10001168 Ga0105243_100011682 358
15 3300025935 Ga0207709_10000241 Ga0207709_1000024126 358
16 3300027111 Ga0209281_1000005 Ga0209281_1000005964 358
17 3300005435 Ga0070714_100370082 Ga0070714_1003700822 359
18 3300005530 Ga0070679_100073514 Ga0070679_1000735143 359
19 3300025921 Ga0207652_10059540 Ga0207652_100595402 359
20 3300025929 Ga0207664_10329489 Ga0207664_103294891 359
21 3300031344 Ga0265316_10137334 Ga0265316_101373342 361
22 3300031711 Ga0265314_10009112 Ga0265314_100091125 361
23 3300041406 Ga0439439_0012404 Ga0439439_0012404_657_1814 364
24 3300042007 Ga0439449_0009227 Ga0439449_0009227_1614_2771 364
25 3300021361 Ga0213872_10029884 Ga0213872_100298842 371
26 3300039447 Ga0436361_1118930 Ga0436361_1118930_35305_36477 371
27 3300005328 Ga0070676_10018695 Ga0070676_100186953 372
28 3300005338 Ga0068868_100046149 Ga0068868_1000461493 372
29 3300013297 Ga0157378_10231229 Ga0157378_102312292 372
30 3300025907 Ga0207645_10005790 Ga0207645_100057903 372
31 3300037471 Ga0395905_0186964 Ga0395905_0186964_357_1520 373
32 iso_pu_bacteria 2643221554 2643787081 373
33 iso_pu_bacteria 2857564685 2857564851 373
34 3300046530 Ga0495654_0085918 Ga0495654_0085918_318_1451 375
35 3300046558 Ga0495633_0000188 Ga0495633_0000188_10175_11308 375
36 iso_pu_bacteria 2585428062 2587755992 377
37 iso_pu_bacteria 2643221644 2644247586 377
38 iso_pu_bacteria 2932422444 2932423454 378
39 iso_pu_bacteria 2904479285 2904483007 379
40 3300049569 Ga0501032_0187384 Ga0501032_0187384_102_1244 380
41 iso_pu_bacteria 2881101125 2881101865 380
42 iso_pu_bacteria 2919704043 2919705359 380
43 3300005347 Ga0070668_100062962 Ga0070668_1000629622 381
44 3300005617 Ga0068859_100052472 Ga0068859_1000524723 381
45 3300005617 Ga0068859_100155109 Ga0068859_1001551092 381
46 3300005841 Ga0068863_100162507 Ga0068863_1001625072 381
47 3300005843 Ga0068860_100003439 Ga0068860_1000034393 381
48 3300006178 Ga0075367_10102769 Ga0075367_101027692 381
49 3300006881 Ga0068865_100012259 Ga0068865_1000122592 381
50 3300006931 Ga0097620_100052470 Ga0097620_1000524703 381
51 3300006931 Ga0097620_100155113 Ga0097620_1001551132 381
52 3300009553 Ga0105249_10027329 Ga0105249_100273294 381
53 3300013297 Ga0157378_10007304 Ga0157378_100073049 381
54 3300013306 Ga0163162_10019792 Ga0163162_100197923 381
55 3300014326 Ga0157380_10066069 Ga0157380_100660692 381
56 3300014968 Ga0157379_10079117 Ga0157379_100791172 381
57 3300026118 Ga0207675_100005221 Ga0207675_1000052217 381
58 3300028381 Ga0268264_10003080 Ga0268264_100030808 381
59 3300028794 Ga0307515_10000998 Ga0307515_100009987 381
60 3300028794 Ga0307515_10018121 Ga0307515_100181214 381
61 3300031456 Ga0307513_10024236 Ga0307513_100242366 381
62 3300031616 Ga0307508_10000004 Ga0307508_10000004202 381
63 3300031649 Ga0307514_10021593 Ga0307514_100215934 381
64 3300031730 Ga0307516_10119303 Ga0307516_101193033 381
65 3300032002 Ga0307416_100394705 Ga0307416_1003947051 381
66 3300037068 Ga0373925_0006984 Ga0373925_0006984_6004_7182 381
67 3300037418 Ga0395900_0000054 Ga0395900_0000054_199841_200986 381
68 3300037466 Ga0395898_0000485 Ga0395898_0000485_65099_66244 381
69 3300041459 Ga0451800_0007392 Ga0451800_0007392_288_1433 381
70 3300044673 Ga0453683_0015371 Ga0453683_0015371_2082_3227 381
71 3300046519 Ga0495632_0039950 Ga0495632_0039950_53_1198 381
72 3300046539 Ga0495621_0048312 Ga0495621_0048312_205_1350 381
73 3300046660 Ga0495625_0006349 Ga0495625_0006349_1936_3081 381
74 3300046681 Ga0495647_0016848 Ga0495647_0016848_1010_2155 381
75 3300047472 Ga0495686_0046141 Ga0495686_0046141_1355_2500 381
76 3300048905 Ga0496102_0006323 Ga0496102_0006323_6596_7741 381
77 3300005331 Ga0070670_100185054 Ga0070670_1001850542 382
78 3300005354 Ga0070675_100106080 Ga0070675_1001060802 382
79 3300005459 Ga0068867_100000047 Ga0068867_10000004726 382
80 3300009148 Ga0105243_10016919 Ga0105243_100169194 382
81 3300014745 Ga0157377_10000083 Ga0157377_1000008318 382
82 3300025926 Ga0207659_10062082 Ga0207659_100620822 382
83 3300025935 Ga0207709_10008978 Ga0207709_100089782 382
84 3300026089 Ga0207648_10000091 Ga0207648_1000009127 382
85 3300026142 Ga0207698_10103678 Ga0207698_101036782 382
86 3300031239 Ga0265328_10049864 Ga0265328_100498642 382
87 3300031251 Ga0265327_10000309 Ga0265327_1000030972 382
88 3300037312 Ga0395899_0014684 Ga0395899_0014684_1016_2164 382
89 3300037418 Ga0395900_0013823 Ga0395900_0013823_3523_4671 382
90 3300037466 Ga0395898_0016949 Ga0395898_0016949_5477_6625 382
91 3300046558 Ga0495633_0002428 Ga0495633_0002428_10153_11301 382
92 3300049742 Ga0501080_0178240 Ga0501080_0178240_537_1685 382
93 3300049822 Ga0501035_0044685 Ga0501035_0044685_697_1845 382
94 3300049823 Ga0501044_0118676 Ga0501044_0118676_955_2103 382
95 3300050493 nmdc:mga0k408_25197_c1 nmdc:mga0k408_25197_c1_2203_3351 382
96 iso_pu_bacteria 2721755523 2722883859 382
97 iso_pu_bacteria 2839138175 2839139004 382
98 3300006880 Ga0075429_100026463 Ga0075429_1000264634 383
99 3300037312 Ga0395899_0007810 Ga0395899_0007810_806_1957 383
100 3300037418 Ga0395900_0055675 Ga0395900_0055675_1453_2604 383
101 3300037466 Ga0395898_0052456 Ga0395898_0052456_1492_2643 383
102 3300037471 Ga0395905_0000148 Ga0395905_0000148_36242_37393 383
103 3300037471 Ga0395905_0011526 Ga0395905_0011526_5595_6746 383
104 3300038443 Ga0395901_0024300 Ga0395901_0024300_57_1208 383
105 3300044656 Ga0466969_0004483 Ga0466969_0004483_4868_6019 383
106 3300044684 Ga0466966_0015372 Ga0466966_0015372_465_1616 383
107 3300044693 Ga0466961_0071396 Ga0466961_0071396_247_1398 383
108 3300044842 Ga0466957_0064441 Ga0466957_0064441_346_1497 383
109 3300053148 Ga0500590_022039 Ga0500590_022039_845_1996 383
110 3300025913 Ga0207695_10007480 Ga0207695_100074808 384
111 3300048917 Ga0496114_0251439 Ga0496114_0251439_91_1263 384
112 3300050492 nmdc:mga0yw44_60110_c1 nmdc:mga0yw44_60110_c1_365_1531 384
113 3300059424 Ga0590075_004148 Ga0590075_004148_129_1286 384
114 iso_pu_bacteria 2547132374 2548497502 384
115 iso_pu_bacteria 2643221570 2643865911 384
116 iso_pu_bacteria 2643221652 2644294216 384
117 iso_pu_bacteria 2643221717 2644647377 384
118 iso_pu_bacteria 2842718218 2842719279 384
119 iso_pu_bacteria 2894023352 2894025651 384
120 iso_pu_bacteria 2974320154 2974323568 384
121 3300031911 Ga0307412_10070274 Ga0307412_100702741 385
122 3300046457 Ga0495590_0065148 Ga0495590_0065148_74_1234 385
123 iso_pu_bacteria 2842747753 2842747836 385
124 3300005364 Ga0070673_100056301 Ga0070673_1000563012 386
125 3300005367 Ga0070667_100052823 Ga0070667_1000528233 386
126 3300005564 Ga0070664_100060354 Ga0070664_1000603542 386
127 3300005617 Ga0068859_100031426 Ga0068859_1000314263 386
128 3300005842 Ga0068858_100031036 Ga0068858_1000310365 386
129 3300006358 Ga0068871_100124246 Ga0068871_1001242462 386
130 3300006931 Ga0097620_100031426 Ga0097620_1000314263 386
131 3300009177 Ga0105248_10066385 Ga0105248_100663852 386
132 3300013306 Ga0163162_10053389 Ga0163162_100533893 386
133 3300013308 Ga0157375_10019475 Ga0157375_100194753 386
134 3300014325 Ga0163163_10032797 Ga0163163_100327976 386
135 3300014968 Ga0157379_10000983 Ga0157379_1000098310 386
136 3300014969 Ga0157376_10037619 Ga0157376_100376192 386
137 3300025903 Ga0207680_10004826 Ga0207680_100048266 386
138 3300025911 Ga0207654_10181846 Ga0207654_101818462 386
139 3300025941 Ga0207711_10061829 Ga0207711_100618293 386
140 3300025945 Ga0207679_10231500 Ga0207679_102315002 386
141 3300025960 Ga0207651_10011235 Ga0207651_100112352 386
142 3300025986 Ga0207658_10014042 Ga0207658_100140423 386
143 3300026088 Ga0207641_10018455 Ga0207641_100184554 386
144 3300028794 Ga0307515_10207534 Ga0307515_102075342 386
145 3300006051 Ga0075364_10059101 Ga0075364_100591013 388
146 3300009176 Ga0105242_10021310 Ga0105242_100213106 388
147 3300025934 Ga0207686_10009771 Ga0207686_100097715 388
148 3300028794 Ga0307515_10002860 Ga0307515_100028609 388
149 3300031235 Ga0265330_10000059 Ga0265330_1000005947 388
150 3300031238 Ga0265332_10000002 Ga0265332_10000002137 388
151 3300031238 Ga0265332_10000094 Ga0265332_1000009415 388
152 3300031241 Ga0265325_10002927 Ga0265325_100029277 388
153 3300031247 Ga0265340_10006817 Ga0265340_100068173 388
154 3300031649 Ga0307514_10000225 Ga0307514_1000022568 388
155 3300031711 Ga0265314_10000012 Ga0265314_10000012248 388
156 3300042876 Ga0451577_0005888 Ga0451577_0005888_5119_6294 388
157 3300042876 Ga0451577_0224717 Ga0451577_0224717_167_1339 388
158 3300044673 Ga0453683_0006618 Ga0453683_0006618_1716_2891 388
159 3300044712 Ga0453684_0236503 Ga0453684_0236503_709_1884 388
160 3300045051 Ga0451576_0010569 Ga0451576_0010569_6758_7933 388
161 3300046530 Ga0495654_0015105 Ga0495654_0015105_2712_3920 388
162 iso_pu_bacteria 2954767861 2954772281 388
163 3300005456 Ga0070678_100104318 Ga0070678_1001043182 389
164 3300013306 Ga0163162_10100521 Ga0163162_101005212 389
165 3300015265 Ga0182005_1014767 Ga0182005_10147672 389
166 3300026121 Ga0207683_10205862 Ga0207683_102058622 389
167 3300046674 Ga0495588_0033451 Ga0495588_0033451_357_1526 389
168 3300048904 Ga0496101_0026224 Ga0496101_0026224_448_1617 389
169 3300048909 Ga0496106_0132869 Ga0496106_0132869_326_1495 389
170 3300048910 Ga0496107_0121937 Ga0496107_0121937_166_1335 389
171 3300053136 Ga0500559_0006390 Ga0500559_0006390_1526_2719 389
172 3300053140 Ga0500573_0031216 Ga0500573_0031216_594_1763 389
173 iso_pu_bacteria 2831265667 2831266372 389
174 3300030745 Ga0316182_1442179 Ga0316182_14421792 392
175 3300002774 JGI25150J39212_1002383 JGI25150J39212_10023833 393
176 3300003374 JGI25161J50226_1007510 JGI25161J50226_10075101 393

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07687

M20_dimer

Peptidase dimerisation domain

195

303

0.98

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

82

392

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4h2k-assembly2.cif.gz_B crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae 0.9529 3 387
4h2k-assembly1.cif.gz_A crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae 0.9357 3 387
4h2k-assembly2.cif.gz_B crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae 0.9308 3 387
4op4-assembly2.cif.gz_B crystal structure of the catalytic domain of dape protein from v.cholerea in the zn bound form 0.9236 1 387
4op4-assembly1.cif.gz_A crystal structure of the catalytic domain of dape protein from v.cholerea in the zn bound form 0.9179 1 387
ID Description Score Start End Superfamily
1vgyB01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9484 1 387 3.40.630.10
1vgyB01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9375 1 387 3.40.630.10
af_P23908_180_301_3.30.70.360 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.8778 188 300 3.30.70.360
af_Q4CYZ5_13_177_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8761 10 173 3.40.630.10
af_P0AED7_3_244_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8752 2 258 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A3N7DPE5-F1-model_v4 Succinyl-diaminopimelate desuccinylase 0.9292 195 362 GO:0006526
GO:0008777
GO:0046872
AF-A0A382NU33-F1-model_v4 Peptidase M20 dimerisation domain-containing protein 0.9271 4 170 GO:0006526
GO:0008777
AF-A0A660N173-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.923 169 387 GO:0006526
GO:0008777
GO:0009014
GO:0046872
AF-A0A519H227-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.922 123 390 GO:0006526
GO:0008777
GO:0009014
GO:0046872
AF-A0A3N7DPE5-F1-model_v4 Succinyl-diaminopimelate desuccinylase 0.9184 195 362 GO:0006526
GO:0008777
GO:0046872

Feature Viewer

pLDDT pTM Quality
92.22 0.88 High
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Predicted Structure (AlphaFold2)

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