F268196

General Info

Members Datasets Scaffolds Average Seq Length
176 137 352 326

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10005995|Ga0114129_1000599519
Length 376
Sequence MQDGPGAPPKGPPRLLDRVRFAMRARHYSLRTEEAYVGWIRRYILFHNKRHPSEMAEPEINAFVTSLAVDGPVSASTQTQALSALLFLYRHVLEKPLPDLDTVIRAKRPGRLPTVLTRNEVRRILQRMNRTPRLVATLLYGTGMRLLECLRLRVKDLEFGNNRIIVPFPVVVRAEMPSWLSRVRRIHRRDLAAGFGSVYLPDSLARKLPGAEKDWGWQYVFPGEHRSHDPRGRTNTPQGEAAAKVERRHHLHESVIQRAVHQAVRDVNISRRISCHTFRHSFATHLLEEGYDIRTIQELLGHRDVKTTMIYTHVLNRGGRGVRSPADILLAGIASSATTSLQPLQSKYLGALVPLDHQLMPGEEVIDTSPSDDVDE

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
4 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
6 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
11 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
15 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
20 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
25 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
28 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
29 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
30 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
31 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
72 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
73 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
74 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
75 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
76 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
77 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
78 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
79 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
80 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
81 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
82 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
83 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
84 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
85 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
88 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
92 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
93 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
96 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
97 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
98 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
99 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
100 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
101 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
102 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
105 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
108 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
109 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
110 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
119 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
136 2643221685 Rhodanobacter sp. Root480 Isolate Unclassified
137 2808606373 Pseudomonas sp. SLBN-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.86
Metatranscriptomes 0
Isolates 1.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 94.89
Stem 0
Stem Tuber 0
Unclassified 3.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10005995 3300009147 Bacteria 17223
2 SwRhRL3b_contig_1348436 2162886006 Bacteria 1763
3 SwRhRL2b_contig_706720 2162886007 Bacteria 1573
4 MRS1b_contig_4363586 2162886011 Bacteria 1552
5 MRS1b_contig_8628730 2162886011 Bacteria 4132
6 MBSR1b_contig_10403676 2162886012 Unclassified 2901
7 JGI25407J50210_10027208 3300003373 Bacteria 1483
8 Ga0065714_10064504 3300005288 Bacteria 46817
9 Ga0065704_10009662 3300005289 Bacteria 2183
10 Ga0065712_10067766 3300005290 Bacteria 46828
11 Ga0065715_10089993 3300005293 Bacteria 7936
12 Ga0065707_10004139 3300005295 Bacteria 3347
13 Ga0070690_100231876 3300005330 Bacteria 1298
14 Ga0070670_100175746 3300005331 Bacteria 1858
15 Ga0070677_10004888 3300005333 Bacteria 4401
16 Ga0068869_100151424 3300005334 Bacteria 1799
17 Ga0070660_100162802 3300005339 Bacteria 1798
18 Ga0070669_100203273 3300005353 Bacteria 1559
19 Ga0070669_100229857 3300005353 Bacteria 1470
20 Ga0070659_100111689 3300005366 Bacteria 2207
21 Ga0070714_100445289 3300005435 Bacteria 1230
22 Ga0070705_100149452 3300005440 Bacteria 1548
23 Ga0070694_100172687 3300005444 Bacteria 1593
24 Ga0070694_100262498 3300005444 Bacteria 1310
25 Ga0070708_100453480 3300005445 Bacteria 1210
26 Ga0068867_100346914 3300005459 Bacteria 1238
27 Ga0070706_100169959 3300005467 Bacteria 2035
28 Ga0070707_100029436 3300005468 Bacteria 5228
29 Ga0070707_100339198 3300005468 Bacteria 1460
30 Ga0070698_100056437 3300005471 Bacteria 3979
31 Ga0070698_100248289 3300005471 Bacteria 1712
32 Ga0070699_100000025 3300005518 Bacteria 158245
33 Ga0070679_100296156 3300005530 Bacteria 1569
34 Ga0070697_100067244 3300005536 Unclassified 2931
35 Ga0070697_100081080 3300005536 Bacteria 2674
36 Ga0070686_100225154 3300005544 Bacteria 1357
37 Ga0070704_100001869 3300005549 Bacteria 11610
38 Ga0068864_100005833 3300005618 Bacteria 10098
39 Ga0068866_10075617 3300005718 Bacteria 1793
40 Ga0068860_100350691 3300005843 Bacteria 1452
41 Ga0068862_100115591 3300005844 Bacteria 2360
42 Ga0068862_100388299 3300005844 Bacteria 1303
43 Ga0081455_10109211 3300005937 Bacteria 2202
44 Ga0081455_10134779 3300005937 Bacteria 1926
45 Ga0081538_10020884 3300005981 Bacteria 4803
46 Ga0081540_1058704 3300005983 Bacteria 1851
47 Ga0070715_10000064 3300006163 Bacteria 33475
48 Ga0097621_100000376 3300006237 Bacteria 31041
49 Ga0068871_100020307 3300006358 Bacteria 5088
50 Ga0068871_100332796 3300006358 Bacteria 1339
51 Ga0075428_100012353 3300006844 Bacteria 9501
52 Ga0075431_100037754 3300006847 Bacteria 4973
53 Ga0075431_100194252 3300006847 Bacteria 2078
54 Ga0075433_10001972 3300006852 Bacteria 15433
55 Ga0075429_100021433 3300006880 Bacteria 5602
56 Ga0099794_10173048 3300007265 Bacteria 1101
57 Ga0111539_10059682 3300009094 Bacteria 4522
58 Ga0111539_10431427 3300009094 Bacteria 1534
59 Ga0114129_10002720 3300009147 Bacteria 24635
60 Ga0114129_10108028 3300009147 Bacteria 3842
61 Ga0114129_10385223 3300009147 Unclassified 1851
62 Ga0114129_10521155 3300009147 Bacteria 1550
63 Ga0157372_10321166 3300013307 Bacteria 1803
64 Ga0163163_10470134 3300014325 Bacteria 1318
65 Ga0157380_10234482 3300014326 Bacteria 1650
66 Ga0207642_10001402 3300025899 Bacteria 7466
67 Ga0207685_10000056 3300025905 Bacteria 34032
68 Ga0207645_10111780 3300025907 Bacteria 1769
69 Ga0207643_10110922 3300025908 Bacteria 1616
70 Ga0207657_10056484 3300025919 Bacteria 3387
71 Ga0207646_10027448 3300025922 Bacteria 5191
72 Ga0207646_10432422 3300025922 Bacteria 1188
73 Ga0207694_10022959 3300025924 Bacteria 4734
74 Ga0207650_10200259 3300025925 Bacteria 1599
75 Ga0207687_10295003 3300025927 Bacteria 1304
76 Ga0207709_10204435 3300025935 Bacteria 1413
77 Ga0207704_10341990 3300025938 Bacteria 1162
78 Ga0207691_10058188 3300025940 Bacteria 3516
79 Ga0207689_10184900 3300025942 Bacteria 1719
80 Ga0207708_10070371 3300026075 Bacteria 2679
81 Ga0207648_10154308 3300026089 Bacteria 2026
82 Ga0207676_10005327 3300026095 Bacteria 9109
83 Ga0207676_10046153 3300026095 Bacteria 3370
84 Ga0207675_100294909 3300026118 Bacteria 1578
85 Ga0207675_100408494 3300026118 Bacteria 1339
86 Ga0207683_10255795 3300026121 Bacteria 1599
87 Ga0268265_10104182 3300028380 Bacteria 2299
88 Ga0268264_10127872 3300028381 Bacteria 2248
89 Ga0268264_10448253 3300028381 Bacteria 1250
90 Ga0265326_10031649 3300028558 Bacteria 1507
91 Ga0265319_1002725 3300028563 Bacteria 9480
92 Ga0265318_10060557 3300028577 Bacteria 1410
93 Ga0265318_10061319 3300028577 Bacteria 1401
94 Ga0265323_10017861 3300028653 Unclassified 2751
95 Ga0265322_10028528 3300028654 Bacteria 1593
96 Ga0265338_10004682 3300028800 Bacteria 18351
97 Ga0265324_10028779 3300029957 Bacteria 1957
98 Ga0265324_10044149 3300029957 Bacteria 1537
99 Ga0265330_10054404 3300031235 Bacteria 1749
100 Ga0265328_10053734 3300031239 Bacteria 1477
101 Ga0265320_10068055 3300031240 Bacteria 1683
102 Ga0265329_10033634 3300031242 Bacteria 1657
103 Ga0265340_10072325 3300031247 Bacteria 1633
104 Ga0265339_10078009 3300031249 Bacteria 1754
105 Ga0265331_10081584 3300031250 Bacteria 1501
106 Ga0265316_10150812 3300031344 Bacteria 1741
107 Ga0265316_10183003 3300031344 Bacteria 1559
108 Ga0307408_100207163 3300031548 Bacteria 1591
109 Ga0265314_10059635 3300031711 Bacteria 2609
110 Ga0316578_10067627 3300031728 Bacteria 2112
111 Ga0307416_100087173 3300032002 Bacteria 2664
112 Ga0307416_100218919 3300032002 Bacteria 1824
113 Ga0307411_10080767 3300032005 Bacteria 2237
114 Ga0373944_0047681 3300035089 Bacteria 1343
115 Ga0373945_0014683 3300035116 Bacteria 2628
116 Ga0373943_0061885 3300035170 Bacteria 1872
117 Ga0316584_0175737 3300036712 Bacteria 1586
118 Ga0400490_02455 3300038726 Bacteria 3609
119 Ga0400488_33556 3300038741 Bacteria 5801
120 Ga0400486_28803 3300038742 Bacteria 11780
121 Ga0400483_282547 3300039062 Bacteria 2996
122 Ga0400489_77849 3300039093 Bacteria 1403
123 Ga0400489_95203 3300039093 Bacteria 1319
124 Ga0400487_26909 3300039110 Bacteria 4207
125 Ga0439456_020125 3300042013 Bacteria 1407
126 Ga0439459_0001690 3300042438 Bacteria 3290
127 Ga0451577_0000135 3300042876 Bacteria 164236
128 Ga0451577_0000151 3300042876 Bacteria 153747
129 Ga0451577_0153223 3300042876 Bacteria 2074
130 Ga0453683_0000145 3300044673 Bacteria 104430
131 Ga0453683_0041882 3300044673 Unclassified 2876
132 Ga0453684_0000038 3300044712 Bacteria 706970
133 Ga0453684_0000271 3300044712 Bacteria 223654
134 Ga0453684_0000424 3300044712 Bacteria 172336
135 Ga0453684_0108826 3300044712 Bacteria 3372
136 Ga0451576_0001278 3300045051 Bacteria 43871
137 Ga0451576_0029670 3300045051 Bacteria 5851
138 Ga0495582_0115779 3300046473 Bacteria 1508
139 Ga0495658_0196613 3300046683 Bacteria 1255
140 Ga0495674_0439057 3300047319 Bacteria 1050
141 Ga0501037_0217961 3300049573 Bacteria 1344
142 Ga0501038_0045282 3300049574 Bacteria 3820
143 Ga0501039_0056407 3300049575 Bacteria 3043
144 Ga0501040_0007357 3300049576 Bacteria 7129
145 Ga0501041_0029622 3300049577 Bacteria 3302
146 Ga0501041_0087124 3300049577 Bacteria 1927
147 Ga0501043_0354494 3300049579 Bacteria 1114
148 Ga0501047_0083330 3300049581 Bacteria 3073
149 Ga0501048_0145994 3300049582 Bacteria 1673
150 Ga0501071_0032176 3300049587 Bacteria 3723
151 Ga0501072_0069909 3300049588 Bacteria 2772
152 Ga0501072_0182994 3300049588 Bacteria 1672
153 Ga0501074_0045839 3300049590 Bacteria 3162
154 Ga0501075_0024273 3300049591 Bacteria 4443
155 Ga0501076_0018481 3300049592 Bacteria 5316
156 Ga0501076_0123303 3300049592 Bacteria 2099
157 Ga0501077_0052244 3300049593 Bacteria 2596
158 Ga0501080_0134438 3300049742 Bacteria 2289
159 Ga0501081_0026714 3300049743 Bacteria 3895
160 Ga0501035_0119401 3300049822 Bacteria 2306
161 Ga0501045_0008609 3300049824 Bacteria 7111
162 nmdc:mga05p37_18274_c1 3300050507 Bacteria 8470
163 nmdc:mga05p37_269436_c1 3300050507 Bacteria 2035
164 nmdc:mga05p37_291388_c1 3300050507 Bacteria 1943
165 nmdc:mga05p37_2933_c1 3300050507 Bacteria 19793
166 nmdc:mga09592_34274_c1 3300050508 Bacteria 4244
167 nmdc:mga06r32_444615_c1 3300050510 Bacteria 1276
168 nmdc:mga08y16_20702_c1 3300050511 Bacteria 6943
169 nmdc:mga08y16_235599_c1 3300050511 Unclassified 1893
170 nmdc:mga08y16_59729_c1 3300050511 Bacteria 3983
171 nmdc:mga0a205_1078_c1 3300050515 Bacteria 22647
172 Ga0501084_0155305 3300054114 Bacteria 1929
173 Ga0501082_0023069 3300060353 Bacteria 5365
174 Ga0530510_0008411 3300061734 Bacteria 7192
175 2644478513 2643221685 Bacteria 3673288
176 2808907108 2808606373 Bacteria 4423627
177 Ga0114129_10005995
178 SwRhRL3b_contig_1348436
179 SwRhRL2b_contig_706720
180 MRS1b_contig_4363586
181 MRS1b_contig_8628730
182 MBSR1b_contig_10403676
183 JGI25407J50210_10027208
184 Ga0065714_10064504
185 Ga0065704_10009662
186 Ga0065712_10067766
187 Ga0065715_10089993
188 Ga0065707_10004139
189 Ga0070690_100231876
190 Ga0070670_100175746
191 Ga0070677_10004888
192 Ga0068869_100151424
193 Ga0070660_100162802
194 Ga0070669_100203273
195 Ga0070669_100229857
196 Ga0070659_100111689
197 Ga0070714_100445289
198 Ga0070705_100149452
199 Ga0070694_100172687
200 Ga0070694_100262498
201 Ga0070708_100453480
202 Ga0068867_100346914
203 Ga0070706_100169959
204 Ga0070707_100029436
205 Ga0070707_100339198
206 Ga0070698_100056437
207 Ga0070698_100248289
208 Ga0070699_100000025
209 Ga0070679_100296156
210 Ga0070697_100067244
211 Ga0070697_100081080
212 Ga0070686_100225154
213 Ga0070704_100001869
214 Ga0068864_100005833
215 Ga0068866_10075617
216 Ga0068860_100350691
217 Ga0068862_100115591
218 Ga0068862_100388299
219 Ga0081455_10109211
220 Ga0081455_10134779
221 Ga0081538_10020884
222 Ga0081540_1058704
223 Ga0070715_10000064
224 Ga0097621_100000376
225 Ga0068871_100020307
226 Ga0068871_100332796
227 Ga0075428_100012353
228 Ga0075431_100037754
229 Ga0075431_100194252
230 Ga0075433_10001972
231 Ga0075429_100021433
232 Ga0099794_10173048
233 Ga0111539_10059682
234 Ga0111539_10431427
235 Ga0114129_10002720
236 Ga0114129_10108028
237 Ga0114129_10385223
238 Ga0114129_10521155
239 Ga0157372_10321166
240 Ga0163163_10470134
241 Ga0157380_10234482
242 Ga0207642_10001402
243 Ga0207685_10000056
244 Ga0207645_10111780
245 Ga0207643_10110922
246 Ga0207657_10056484
247 Ga0207646_10027448
248 Ga0207646_10432422
249 Ga0207694_10022959
250 Ga0207650_10200259
251 Ga0207687_10295003
252 Ga0207709_10204435
253 Ga0207704_10341990
254 Ga0207691_10058188
255 Ga0207689_10184900
256 Ga0207708_10070371
257 Ga0207648_10154308
258 Ga0207676_10005327
259 Ga0207676_10046153
260 Ga0207675_100294909
261 Ga0207675_100408494
262 Ga0207683_10255795
263 Ga0268265_10104182
264 Ga0268264_10127872
265 Ga0268264_10448253
266 Ga0265326_10031649
267 Ga0265319_1002725
268 Ga0265318_10060557
269 Ga0265318_10061319
270 Ga0265323_10017861
271 Ga0265322_10028528
272 Ga0265338_10004682
273 Ga0265324_10028779
274 Ga0265324_10044149
275 Ga0265330_10054404
276 Ga0265328_10053734
277 Ga0265320_10068055
278 Ga0265329_10033634
279 Ga0265340_10072325
280 Ga0265339_10078009
281 Ga0265331_10081584
282 Ga0265316_10150812
283 Ga0265316_10183003
284 Ga0307408_100207163
285 Ga0265314_10059635
286 Ga0316578_10067627
287 Ga0307416_100087173
288 Ga0307416_100218919
289 Ga0307411_10080767
290 Ga0373944_0047681
291 Ga0373945_0014683
292 Ga0373943_0061885
293 Ga0316584_0175737
294 Ga0400490_02455
295 Ga0400488_33556
296 Ga0400486_28803
297 Ga0400483_282547
298 Ga0400489_77849
299 Ga0400489_95203
300 Ga0400487_26909
301 Ga0439456_020125
302 Ga0439459_0001690
303 Ga0451577_0000135
304 Ga0451577_0000151
305 Ga0451577_0153223
306 Ga0453683_0000145
307 Ga0453683_0041882
308 Ga0453684_0000038
309 Ga0453684_0000271
310 Ga0453684_0000424
311 Ga0453684_0108826
312 Ga0451576_0001278
313 Ga0451576_0029670
314 Ga0495582_0115779
315 Ga0495658_0196613
316 Ga0495674_0439057
317 Ga0501037_0217961
318 Ga0501038_0045282
319 Ga0501039_0056407
320 Ga0501040_0007357
321 Ga0501041_0029622
322 Ga0501041_0087124
323 Ga0501043_0354494
324 Ga0501047_0083330
325 Ga0501048_0145994
326 Ga0501071_0032176
327 Ga0501072_0069909
328 Ga0501072_0182994
329 Ga0501074_0045839
330 Ga0501075_0024273
331 Ga0501076_0018481
332 Ga0501076_0123303
333 Ga0501077_0052244
334 Ga0501080_0134438
335 Ga0501081_0026714
336 Ga0501035_0119401
337 Ga0501045_0008609
338 nmdc:mga05p37_18274_c1
339 nmdc:mga05p37_269436_c1
340 nmdc:mga05p37_291388_c1
341 nmdc:mga05p37_2933_c1
342 nmdc:mga09592_34274_c1
343 nmdc:mga06r32_444615_c1
344 nmdc:mga08y16_20702_c1
345 nmdc:mga08y16_235599_c1
346 nmdc:mga08y16_59729_c1
347 nmdc:mga0a205_1078_c1
348 Ga0501084_0155305
349 Ga0501082_0023069
350 Ga0530510_0008411
351 2644478513
352 2808907108

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13495

Phage_int_SAM_4

Phage integrase, N-terminal SAM-like domain

15

99

0.98

PF00589

Phage_integrase

Phage integrase family

114

317

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2a3v-assembly1.cif.gz_A structural basis for broad dna-specificity in integron recombination 0.9316 8 306
2a3v-assembly1.cif.gz_C structural basis for broad dna-specificity in integron recombination 0.9166 9 311
2a3v-assembly1.cif.gz_A structural basis for broad dna-specificity in integron recombination 0.8889 8 306
2a3v-assembly1.cif.gz_C structural basis for broad dna-specificity in integron recombination 0.8748 9 311
2a3v-assembly1.cif.gz_D structural basis for broad dna-specificity in integron recombination 0.7645 5 319
ID Description Score Start End Superfamily
2a3vB01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9092 5 97 1.10.150.130
2a3vB01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8911 5 97 1.10.150.130
2a3vB02 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8904 98 311 1.10.443.10
2a3vB02 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8824 98 311 1.10.443.10
4a8eA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8792 9 87 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A1Y6BKU9-F1-model_v4 Phage integrase, N-terminal SAM-like domain 0.9987 1 91 GO:0003677
GO:0015074
AF-A0A2N2UY37-F1-model_v4 Core-binding (CB) domain-containing protein 0.9954 5 90 GO:0003677
GO:0015074
AF-H6V4J6-F1-model_v4 Integrase 0.9915 147 279 GO:0003677
GO:0006310
GO:0015074
AF-A0A1V5QTT0-F1-model_v4 Site-specific tyrosine recombinase XerC 0.9881 126 231 GO:0003677
GO:0006310
GO:0015074
AF-H6V324-F1-model_v4 Integrase 0.9859 147 279 GO:0003677
GO:0006310
GO:0015074

Map