F266606

General Info

Members Datasets Scaffolds Average Seq Length
175 146 134 380

Family's Representative Sequence

Representative Sequence 3300031727|Ga0316576_10133959|Ga0316576_101339592
Length 434
Sequence MIAADAFVEQARGHGFGLWTGVPCSCLKPFINYVIDDPTLHYVAAANEGDAVAVAAGAELAGTPAVAMFQNSGLGNAVNPLTSLTWPFRIPLLLIVTLRGEPGGAPDEPQHELMGRITGDLLNSLQIPWSWFPRETGEIGPTLDAVMSRLRVARRPYALVMRQGSVAPWPLRSGLAVRPRQAVGDALPPVAAATRSEMLAGVLTATGPEDAVIATTGFTSRELYALDDRASHFYMVGSMGCAASIGLGIATVQPQRRVIVLDGDGALLMRLGALATLGYYRPPRFAHVVLDNGVHESTGGQSTVSPSLDLCAMARACGFPRALTAADPITLVNALEGPDPGPLFIRAAIRRGAPEDLPRPRETPAELAARFRRHLETRLAGSTPPAYPRSREALARGPPGAGGRRRLPPRTGLRGPHPRDSRRSDRHLRGDRPL

Samples

Sample ID Description Type Environment
1 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
2 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
3 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
4 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
5 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
6 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
7 2643221578 Streptomyces sp. Root63 Isolate Unclassified
8 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
9 2643221731 Bacillus sp. Root147 Isolate Unclassified
10 2643221732 Bacillus sp. Root239 Isolate Unclassified
11 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
12 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
13 2738543010 Bacillus sp. YR335 Isolate Unclassified
14 2744054657 Brevibacillus sp. SKDU10 Isolate Unclassified
15 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
16 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
17 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
18 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
19 2842882022 Bacillus sp. R-71893 Isolate Unclassified
20 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
21 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
22 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
23 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
24 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
25 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
26 2919720352 Priestia megaterium 4340 Isolate Unclassified
27 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
28 2929004312 Priestia megaterium 1104 Isolate Unclassified
29 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
30 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
31 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
32 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
33 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
34 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
35 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
36 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
37 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
38 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
39 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
40 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
41 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
42 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
43 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
44 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
45 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
46 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
47 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
48 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
51 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
52 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
53 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
54 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
55 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
64 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
78 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
81 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
87 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
88 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
89 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
94 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
95 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
96 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
97 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
98 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
99 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
102 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
108 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
109 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
110 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
111 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
112 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
113 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
114 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
115 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
121 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
122 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
128 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
129 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
130 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
131 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
132 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
137 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
138 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
139 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
142 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
143 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
144 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
145 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
146 8055531788 Lysinibacillus pakistanensis LY1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.57
Metatranscriptomes 0
Isolates 23.43

Biome Distribution

Category Percentage (%)
Aerial Root 1.14
Bulb 0
Endosphere 7.43
Nodule 1.71
Rhizoplane 10.86
Rhizosphere 59.43
Stem 0
Stem Tuber 0
Unclassified 19.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10007053 3300003187 Bacteria 5550
2 JGI25151J46595_10009974 3300003187 Bacteria 4453
3 rootH1_10033360 3300003316 Bacteria 3611
4 Ga0055538_1000325 3300003751 Bacteria 21927
5 Ga0055528_1002044 3300003790 Bacteria 11280
6 Ga0065704_10160644 3300005289 Unclassified 1357
7 Ga0070683_100030725 3300005329 Bacteria 4880
8 Ga0070670_100018606 3300005331 Bacteria 5953
9 Ga0070687_100002313 3300005343 Bacteria 7085
10 Ga0070671_100000816 3300005355 Bacteria 22600
11 Ga0070667_100001080 3300005367 Bacteria 24959
12 Ga0070667_100048269 3300005367 Bacteria 3583
13 Ga0070684_100028642 3300005535 Bacteria 4713
14 Ga0070686_100085620 3300005544 Bacteria 2097
15 Ga0070665_100001796 3300005548 Bacteria 24370
16 Ga0068861_100289506 3300005719 Bacteria 1414
17 Ga0068863_100007741 3300005841 Bacteria 10505
18 Ga0068858_100237071 3300005842 Bacteria 1730
19 Ga0081455_10007441 3300005937 Bacteria 11534
20 Ga0075428_100000073 3300006844 Bacteria 82199
21 Ga0075428_100018662 3300006844 Bacteria 7667
22 Ga0075431_100124033 3300006847 Unclassified 2665
23 Ga0075429_100189577 3300006880 Unclassified 1802
24 Ga0111539_10032785 3300009094 Bacteria 6309
25 Ga0111539_10054284 3300009094 Bacteria 4768
26 Ga0111539_10113309 3300009094 Unclassified 3181
27 Ga0111539_10246780 3300009094 Bacteria 2079
28 Ga0114129_10212417 3300009147 Bacteria 2615
29 Ga0105246_10003568 3300011119 Bacteria 9417
30 Ga0157378_10035513 3300013297 Bacteria 4409
31 Ga0163163_10021278 3300014325 Bacteria 6118
32 Ga0157380_10010736 3300014326 Bacteria 6599
33 Ga0157377_10007430 3300014745 Bacteria 5291
34 Ga0209784_100352 3300025224 Bacteria 22363
35 Ga0209147_100487 3300025229 Bacteria 23776
36 Ga0209673_1002238 3300025273 Bacteria 13986
37 Ga0209025_1004246 3300025294 Bacteria 12613
38 Ga0209025_1004471 3300025294 Bacteria 12126
39 Ga0209025_1011716 3300025294 Bacteria 5730
40 Ga0209025_1012486 3300025294 Bacteria 5437
41 Ga0209025_1015364 3300025294 Bacteria 4624
42 Ga0207696_1004752 3300025711 Bacteria 5781
43 Ga0207655_1034166 3300025728 Bacteria 2290
44 Ga0207644_10002566 3300025931 Bacteria 11684
45 Ga0207709_10149096 3300025935 Bacteria 1618
46 Ga0207661_10032706 3300025944 Bacteria 4033
47 Ga0207658_10001653 3300025986 Bacteria 17016
48 Ga0207658_10094290 3300025986 Bacteria 2329
49 Ga0207703_10216607 3300026035 Bacteria 1710
50 Ga0207641_10063388 3300026088 Bacteria 3157
51 Ga0268266_10002340 3300028379 Bacteria 20499
52 Ga0307509_10275096 3300031507 Unclassified 1449
53 Ga0316576_10133959 3300031727 Bacteria 1865
54 Ga0307409_100362276 3300031995 Bacteria 1372
55 Ga0373927_0000236 3300035695 Bacteria 43280
56 Ga0316584_0125041 3300036712 Bacteria 1921
57 Ga0395899_0023162 3300037312 Unclassified 4707
58 Ga0395900_0189688 3300037418 Unclassified 2086
59 Ga0395905_0008565 3300037471 Bacteria 10084
60 Ga0395905_0022566 3300037471 Bacteria 5952
61 Ga0395901_0001536 3300038443 Bacteria 23950
62 Ga0439449_0014708 3300042007 Bacteria 2941
63 Ga0451577_0073775 3300042876 Bacteria 3044
64 Ga0466969_0036112 3300044656 Bacteria 2497
65 Ga0466961_0067747 3300044693 Bacteria 2267
66 Ga0453684_0000597 3300044712 Archaea 134014
67 Ga0453684_0001276 3300044712 Archaea 75300
68 Ga0453684_0084075 3300044712 Unclassified 3960
69 Ga0466960_0027769 3300044901 Bacteria 2585
70 Ga0466959_0046210 3300045049 Bacteria 3204
71 Ga0495585_0060964 3300046492 Bacteria 2075
72 Ga0495596_0028292 3300046500 Unclassified 2252
73 Ga0495634_0000122 3300046642 Bacteria 66189
74 Ga0495657_0004709 3300046675 Bacteria 10872
75 Ga0495646_0128686 3300046680 Bacteria 1427
76 Ga0495589_0044313 3300046794 Unclassified 2213
77 Ga0495604_0000107 3300047317 Bacteria 69296
78 Ga0495683_0011017 3300047323 Bacteria 4768
79 Ga0496100_0000228 3300048903 Bacteria 29906
80 Ga0496101_0002580 3300048904 Bacteria 11125
81 Ga0496102_0012152 3300048905 Bacteria 7442
82 Ga0496102_0061505 3300048905 Bacteria 3436
83 Ga0496103_0007637 3300048906 Bacteria 6433
84 Ga0496104_0009458 3300048907 Bacteria 8669
85 Ga0496104_0052855 3300048907 Bacteria 3837
86 Ga0496105_0000260 3300048908 Bacteria 35537
87 Ga0496105_0015083 3300048908 Bacteria 6149
88 Ga0496106_0000256 3300048909 Bacteria 37279
89 Ga0496108_0002563 3300048911 Bacteria 14559
90 Ga0496109_0002562 3300048912 Bacteria 15218
91 Ga0496109_0064358 3300048912 Bacteria 3356
92 Ga0496110_0027387 3300048913 Bacteria 4885
93 Ga0496110_0114855 3300048913 Bacteria 2423
94 Ga0496111_0001580 3300048914 Bacteria 13160
95 Ga0496112_0000488 3300048915 Bacteria 26609
96 Ga0496112_0007877 3300048915 Bacteria 9487
97 Ga0496113_0001557 3300048916 Bacteria 12872
98 Ga0496116_0017094 3300048919 Bacteria 5648
99 Ga0496117_0020233 3300048920 Bacteria 5433
100 Ga0496118_0010606 3300048921 Bacteria 9099
101 Ga0496119_0000513 3300048922 Bacteria 52729
102 Ga0496119_0016793 3300048922 Bacteria 5544
103 Ga0496120_0003399 3300048923 Bacteria 14557
104 Ga0496121_0013052 3300048924 Bacteria 8971
105 Ga0496122_0024522 3300048925 Bacteria 5275
106 Ga0496122_0067336 3300048925 Bacteria 2580
107 Ga0496125_0003247 3300048928 Bacteria 20031
108 Ga0496126_0009319 3300048929 Bacteria 10450
109 Ga0496126_0028118 3300048929 Bacteria 5361
110 Ga0501037_0005995 3300049573 Bacteria 8875
111 Ga0501038_0004745 3300049574 Bacteria 12638
112 Ga0501041_0108499 3300049577 Bacteria 1722
113 Ga0501047_0001021 3300049581 Bacteria 28247
114 Ga0501047_0226164 3300049581 Bacteria 1726
115 Ga0501068_0002122 3300049584 Bacteria 10564
116 Ga0501069_0003903 3300049585 Bacteria 7687
117 Ga0501070_0031582 3300049586 Bacteria 4437
118 Ga0501070_0079184 3300049586 Bacteria 2719
119 Ga0501072_0000041 3300049588 Bacteria 108384
120 Ga0501074_0003130 3300049590 Bacteria 11668
121 Ga0501079_0022678 3300049741 Bacteria 4816
122 Ga0501079_0090594 3300049741 Bacteria 2369
123 Ga0501080_0002248 3300049742 Bacteria 16791
124 Ga0501083_0015420 3300049744 Bacteria 5352
125 Ga0501044_0034101 3300049823 Bacteria 5342
126 nmdc:mga09592_165801_c1 3300050508 Unclassified 1909
127 nmdc:mga08y16_47063_c1 3300050511 Unclassified 4515
128 nmdc:mga08y16_79572_c1 3300050511 Bacteria 3416
129 Ga0500643_000209 3300053087 Bacteria 55415
130 Ga0501084_0000124 3300054114 Bacteria 57833
131 Ga0501084_0233402 3300054114 Bacteria 1553
132 Ga0501082_0000522 3300060353 Bacteria 34189
133 Ga0501082_0105080 3300060353 Bacteria 2443
134 Ga0530510_0023347 3300061734 Bacteria 4407

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300044901 Ga0466960_0027769 Ga0466960_0027769_23_988 284
2 iso_pu_bacteria 2929206907 2929209660 289
3 3300005367 Ga0070667_100048269 Ga0070667_1000482693 324
4 3300025986 Ga0207658_10094290 Ga0207658_100942902 324
5 3300044712 Ga0453684_0001276 Ga0453684_0001276_5983_7116 331
6 3300048922 Ga0496119_0016793 Ga0496119_0016793_4426_5511 333
7 3300049577 Ga0501041_0108499 Ga0501041_0108499_336_1466 338
8 3300060353 Ga0501082_0105080 Ga0501082_0105080_1228_2358 338
9 3300044656 Ga0466969_0036112 Ga0466969_0036112_1150_2361 340
10 3300044693 Ga0466961_0067747 Ga0466961_0067747_868_2079 340
11 3300045049 Ga0466959_0046210 Ga0466959_0046210_1552_2763 340
12 iso_pu_bacteria 2643221578 2643901899 340
13 iso_pu_bacteria 2643221673 2644408044 340
14 3300031507 Ga0307509_10275096 Ga0307509_102750962 341
15 3300035695 Ga0373927_0000236 Ga0373927_0000236_34590_35735 341
16 3300046642 Ga0495634_0000122 Ga0495634_0000122_24767_25879 341
17 3300046675 Ga0495657_0004709 Ga0495657_0004709_867_1979 341
18 3300046680 Ga0495646_0128686 Ga0495646_0128686_81_1193 341
19 3300047317 Ga0495604_0000107 Ga0495604_0000107_27874_28986 341
20 3300053087 Ga0500643_000209 Ga0500643_000209_41846_42988 343
21 3300042007 Ga0439449_0014708 Ga0439449_0014708_1401_2522 344
22 3300037471 Ga0395905_0022566 Ga0395905_0022566_4154_5356 346
23 3300049741 Ga0501079_0090594 Ga0501079_0090594_839_1969 347
24 3300054114 Ga0501084_0233402 Ga0501084_0233402_44_1174 347
25 3300037312 Ga0395899_0023162 Ga0395899_0023162_1946_3085 348
26 3300037418 Ga0395900_0189688 Ga0395900_0189688_629_1768 348
27 3300037471 Ga0395905_0008565 Ga0395905_0008565_5520_6659 348
28 3300038443 Ga0395901_0001536 Ga0395901_0001536_18901_20040 348
29 iso_pu_bacteria 2775507266 2778178888 348
30 iso_pu_bacteria 2842482326 2842488146 348
31 iso_pu_bacteria 8055531788 8055534316 348
32 3300049581 Ga0501047_0001021 Ga0501047_0001021_2374_3537 349
33 3300049584 Ga0501068_0002122 Ga0501068_0002122_8514_9677 349
34 3300049585 Ga0501069_0003903 Ga0501069_0003903_4064_5227 349
35 3300049586 Ga0501070_0031582 Ga0501070_0031582_1644_2807 349
36 3300049588 Ga0501072_0000041 Ga0501072_0000041_98644_99807 349
37 3300049741 Ga0501079_0022678 Ga0501079_0022678_3559_4722 349
38 3300049744 Ga0501083_0015420 Ga0501083_0015420_1531_2694 349
39 3300049823 Ga0501044_0034101 Ga0501044_0034101_937_2100 349
40 3300054114 Ga0501084_0000124 Ga0501084_0000124_4825_5988 349
41 3300060353 Ga0501082_0000522 Ga0501082_0000522_32899_34062 349
42 3300061734 Ga0530510_0023347 Ga0530510_0023347_1160_2323 349
43 iso_pu_bacteria 2571042588 2573040935 349
44 iso_pu_bacteria 2579778775 2580934805 349
45 iso_pu_bacteria 2619619294 2621275616 349
46 iso_pu_bacteria 2643221731 2644719985 349
47 iso_pu_bacteria 2643221732 2644721568 349
48 iso_pu_bacteria 2738543010 2739234777 349
49 iso_pu_bacteria 2818991465 2819708723 349
50 iso_pu_bacteria 2842882022 2842885973 349
51 iso_pu_bacteria 2904524088 2904528390 349
52 iso_pu_bacteria 2919143609 2919147537 349
53 iso_pu_bacteria 2919517244 2919521511 349
54 iso_pu_bacteria 2919720352 2919723790 349
55 iso_pu_bacteria 2928093941 2928098577 349
56 iso_pu_bacteria 2929004312 2929005367 349
57 iso_pu_bacteria 2960319331 2960321928 349
58 iso_pu_bacteria 2960375949 2960376978 349
59 iso_pu_bacteria 2984527788 2984531274 349
60 iso_pu_bacteria 2984532647 2984537384 349
61 iso_pu_bacteria 8005570704 8005571495 349
62 iso_pu_bacteria 8022914991 8022919967 349
63 3300046500 Ga0495596_0028292 Ga0495596_0028292_204_1373 350
64 3300046794 Ga0495589_0044313 Ga0495589_0044313_850_2019 350
65 iso_pu_bacteria 646564506 646815167 350
66 3300005329 Ga0070683_100030725 Ga0070683_1000307252 351
67 3300005535 Ga0070684_100028642 Ga0070684_1000286423 351
68 3300005544 Ga0070686_100085620 Ga0070686_1000856202 351
69 3300009094 Ga0111539_10054284 Ga0111539_100542843 351
70 3300009094 Ga0111539_10246780 Ga0111539_102467802 351
71 3300025944 Ga0207661_10032706 Ga0207661_100327062 351
72 iso_pu_bacteria 2510065053 2510281233 351
73 iso_pu_bacteria 2510065058 2510309381 351
74 iso_pu_bacteria 3001267043 3001268758 351
75 3300003751 Ga0055538_1000325 Ga0055538_100032526 352
76 3300005331 Ga0070670_100018606 Ga0070670_1000186066 352
77 3300005355 Ga0070671_100000816 Ga0070671_10000081614 352
78 3300005367 Ga0070667_100001080 Ga0070667_10000108012 352
79 3300005548 Ga0070665_100001796 Ga0070665_10000179616 352
80 3300005841 Ga0068863_100007741 Ga0068863_1000077414 352
81 3300005842 Ga0068858_100237071 Ga0068858_1002370712 352
82 3300009094 Ga0111539_10032785 Ga0111539_100327851 352
83 3300014325 Ga0163163_10021278 Ga0163163_100212785 352
84 3300014326 Ga0157380_10010736 Ga0157380_100107364 352
85 3300025224 Ga0209784_100352 Ga0209784_10035220 352
86 3300025931 Ga0207644_10002566 Ga0207644_100025664 352
87 3300025986 Ga0207658_10001653 Ga0207658_100016534 352
88 3300026035 Ga0207703_10216607 Ga0207703_102166072 352
89 3300026088 Ga0207641_10063388 Ga0207641_100633882 352
90 3300028379 Ga0268266_10002340 Ga0268266_100023403 352
91 3300031995 Ga0307409_100362276 Ga0307409_1003622762 352
92 3300048905 Ga0496102_0061505 Ga0496102_0061505_1310_2485 352
93 3300048907 Ga0496104_0052855 Ga0496104_0052855_816_1991 352
94 3300048908 Ga0496105_0015083 Ga0496105_0015083_2723_3898 352
95 3300048912 Ga0496109_0064358 Ga0496109_0064358_180_1355 352
96 3300048913 Ga0496110_0114855 Ga0496110_0114855_41_1216 352
97 3300050511 nmdc:mga08y16_79572_c1 nmdc:mga08y16_79572_c1_261_1388 352
98 3300003187 JGI25151J46595_10009974 JGI25151J46595_100099743 353
99 3300003316 rootH1_10033360 rootH1_100333603 353
100 3300003790 Ga0055528_1002044 Ga0055528_100204412 353
101 3300005289 Ga0065704_10160644 Ga0065704_101606442 353
102 3300006844 Ga0075428_100018662 Ga0075428_1000186622 353
103 3300006847 Ga0075431_100124033 Ga0075431_1001240332 353
104 3300006880 Ga0075429_100189577 Ga0075429_1001895772 353
105 3300009094 Ga0111539_10113309 Ga0111539_101133092 353
106 3300011119 Ga0105246_10003568 Ga0105246_100035684 353
107 3300013297 Ga0157378_10035513 Ga0157378_100355132 353
108 3300014745 Ga0157377_10007430 Ga0157377_100074303 353
109 3300025229 Ga0209147_100487 Ga0209147_10048714 353
110 3300025273 Ga0209673_1002238 Ga0209673_10022383 353
111 3300025294 Ga0209025_1004246 Ga0209025_10042467 353
112 3300025294 Ga0209025_1004471 Ga0209025_10044716 353
113 3300025294 Ga0209025_1015364 Ga0209025_10153642 353
114 3300025711 Ga0207696_1004752 Ga0207696_10047525 353
115 3300025728 Ga0207655_1034166 Ga0207655_10341662 353
116 3300025935 Ga0207709_10149096 Ga0207709_101490962 353
117 3300031727 Ga0316576_10133959 Ga0316576_101339592 353
118 3300036712 Ga0316584_0125041 Ga0316584_0125041_277_1437 353
119 3300046492 Ga0495585_0060964 Ga0495585_0060964_666_1808 353
120 3300047323 Ga0495683_0011017 Ga0495683_0011017_1070_2212 353
121 3300048903 Ga0496100_0000228 Ga0496100_0000228_11213_12355 353
122 3300048904 Ga0496101_0002580 Ga0496101_0002580_1978_3120 353
123 3300048905 Ga0496102_0012152 Ga0496102_0012152_2749_3891 353
124 3300048906 Ga0496103_0007637 Ga0496103_0007637_3442_4584 353
125 3300048907 Ga0496104_0009458 Ga0496104_0009458_4779_5921 353
126 3300048908 Ga0496105_0000260 Ga0496105_0000260_5758_6900 353
127 3300048909 Ga0496106_0000256 Ga0496106_0000256_14350_15492 353
128 3300048911 Ga0496108_0002563 Ga0496108_0002563_10099_11241 353
129 3300048912 Ga0496109_0002562 Ga0496109_0002562_5756_6898 353
130 3300048913 Ga0496110_0027387 Ga0496110_0027387_867_2009 353
131 3300048914 Ga0496111_0001580 Ga0496111_0001580_3570_4712 353
132 3300048915 Ga0496112_0000488 Ga0496112_0000488_23490_24632 353
133 3300048916 Ga0496113_0001557 Ga0496113_0001557_7791_8933 353
134 3300048922 Ga0496119_0000513 Ga0496119_0000513_9013_10155 353
135 3300048925 Ga0496122_0024522 Ga0496122_0024522_2877_4019 353
136 3300048929 Ga0496126_0009319 Ga0496126_0009319_6452_7594 353
137 3300050508 nmdc:mga09592_165801_c1 nmdc:mga09592_165801_c1_401_1531 353
138 3300050511 nmdc:mga08y16_47063_c1 nmdc:mga08y16_47063_c1_1782_2912 353
139 3300005937 Ga0081455_10007441 Ga0081455_1000744110 354
140 3300042876 Ga0451577_0073775 Ga0451577_0073775_1787_2920 354
141 3300044712 Ga0453684_0000597 Ga0453684_0000597_46765_47898 354
142 3300044712 Ga0453684_0084075 Ga0453684_0084075_1183_2316 354
143 3300049573 Ga0501037_0005995 Ga0501037_0005995_5669_6823 354
144 3300049586 Ga0501070_0079184 Ga0501070_0079184_106_1260 354
145 3300049590 Ga0501074_0003130 Ga0501074_0003130_7988_9142 354
146 3300049742 Ga0501080_0002248 Ga0501080_0002248_3968_5122 354
147 iso_pu_bacteria 2721755693 2723606737 354
148 iso_pu_bacteria 2728369359 2730137326 354
149 iso_pu_bacteria 2751185905 2753809099 354
150 iso_pu_bacteria 2889276214 2889277285 354
151 iso_pu_bacteria 2939702853 2939703272 354
152 iso_pu_bacteria 2996706504 2996707910 354
153 iso_pu_bacteria 648028048 648172702 354
154 3300005343 Ga0070687_100002313 Ga0070687_1000023135 355
155 3300009147 Ga0114129_10212417 Ga0114129_102124171 355
156 3300049574 Ga0501038_0004745 Ga0501038_0004745_1725_2885 355
157 3300049581 Ga0501047_0226164 Ga0501047_0226164_462_1619 355
158 iso_pu_bacteria 2551306166 2552113604 355
159 iso_pu_bacteria 2898907183 2898907251 355
160 3300005719 Ga0068861_100289506 Ga0068861_1002895062 356
161 3300048915 Ga0496112_0007877 Ga0496112_0007877_3988_5184 356
162 3300025294 Ga0209025_1012486 Ga0209025_10124864 358
163 3300048919 Ga0496116_0017094 Ga0496116_0017094_3136_4296 358
164 3300048920 Ga0496117_0020233 Ga0496117_0020233_828_1988 358
165 3300048921 Ga0496118_0010606 Ga0496118_0010606_3458_4618 358
166 3300048923 Ga0496120_0003399 Ga0496120_0003399_5322_6482 358
167 3300048924 Ga0496121_0013052 Ga0496121_0013052_3590_4750 358
168 3300048925 Ga0496122_0067336 Ga0496122_0067336_335_1495 358
169 3300048928 Ga0496125_0003247 Ga0496125_0003247_17144_18304 358
170 3300048929 Ga0496126_0028118 Ga0496126_0028118_1719_2879 358
171 iso_pu_bacteria 2857591370 2857593359 358
172 iso_pu_bacteria 2744054657 2745169089 359
173 3300006844 Ga0075428_100000073 Ga0075428_10000007334 360
174 3300003187 JGI25151J46595_10007053 JGI25151J46595_100070533 362
175 3300025294 Ga0209025_1011716 Ga0209025_10117163 362

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

1

117

0.87

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

215

346

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mq5-assembly1.cif.gz_A crystal structure of benzoylformate decarboxylase mutant a306f 0.8103 2 327
4jud-assembly1.cif.gz_X crystal structure of the ser26thr mutant of benzoylformate decarboxylase from pseudomonas putida 0.8086 2 328
4jd5-assembly1.cif.gz_A crystal structure of benzoylformate decarboxylase mutant l403e 0.8045 2 328
6qsi-assembly1.cif.gz_A pseudomonas fluorescens pf-5 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase 0.8002 2 328
4gpe-assembly1.cif.gz_A crystal structure of benzoylformate decarboxylase mutant l403m 0.7959 2 328
ID Description Score Start End Superfamily
af_A4I3N7_14_187_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9308 1 159 3.40.50.970
af_P58416_5_175_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9204 192 340 3.40.50.970
af_Q4D595_58_227_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9106 4 160 3.40.50.970
af_P58415_1_165_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8911 1 161 3.40.50.970
af_Q4D595_238_443_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8733 190 342 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A1N7L9V7-F1-model_v4 Phosphonopyruvate decarboxylase 0.9977 1 169 GO:0016831
GO:0030976
AF-A0A6G9J544-F1-model_v4 Phosphonopyruvate decarboxylase (EC 4.1.1.82) 0.9882 1 352 GO:0030976
GO:0032923
GO:0033980
AF-A0A356HW03-F1-model_v4 deleted 0.975 1 160
AF-F5LK01-F1-model_v4 Phosphonopyruvate decarboxylase (EC 4.1.1.82) 0.9716 12 269 GO:0000287
GO:0030976
GO:0032923
GO:0033980
AF-A0A2P2I9T3-F1-model_v4 Phosphonopyruvate decarboxylase 0.9714 1 166 GO:0016831
GO:0030976

Feature Viewer

pLDDT pTM Quality
93.38 0.93 High
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Predicted Structure (AlphaFold2)

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