F266343

General Info

Members Datasets Scaffolds Average Seq Length
175 142 350 227

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10552678|Ga0157369_105526781
Length 277
Sequence LRVSWRVLERTVKRRRFSREAVVARPRLTSQDGGAAELKPSEEAAMADKNERPVCAVIGVGPGNGEAFARRFAADGYAVALMARRTELTAKLAAELPRAKAYPCDVAEAASVAAAFAAMRADLGDADILIYNAGSGVWGHVEEVTAEDLERSWRVNALGLFLAAREAIPAMRRKGKGAIVVVGATASRRGAFAQAKMAQRALAESLARHLWPAGIHVALIVVDGVVGGPATRARVQGRPDDFFIDPAGVASIAAGLVAQDRAAWSFEVEARPFKEKW

Samples

Sample ID Description Type Environment
1 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
42 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300012491 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
87 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
88 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
89 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
90 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
91 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
92 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
93 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
94 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
95 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
96 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
97 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
98 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
99 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
100 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
101 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
102 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
103 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
106 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
107 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
108 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
109 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
110 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
111 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
112 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
113 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
114 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
115 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
116 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
120 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
121 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
122 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
126 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
127 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
128 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
129 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
130 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
134 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
135 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
136 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
137 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
138 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
139 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
140 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
141 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
142 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.57
Metatranscriptomes 0
Isolates 3.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.71
Nodule 2.86
Rhizoplane 3.43
Rhizosphere 89.71
Stem 0
Stem Tuber 0
Unclassified 20

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157369_10552678 3300013105 Bacteria 1190
2 rootH1_10163542 3300003323 Bacteria 6436
3 Ga0070670_100053083 3300005331 Bacteria 3480
4 Ga0070670_100299337 3300005331 Bacteria 1407
5 Ga0068869_100002559 3300005334 Bacteria 10978
6 Ga0070682_100098584 3300005337 Bacteria 1925
7 Ga0070689_100559806 3300005340 Bacteria 986
8 Ga0070687_100125567 3300005343 Unclassified 1474
9 Ga0070668_100300024 3300005347 Bacteria 1347
10 Ga0070669_100014694 3300005353 Bacteria 5573
11 Ga0070675_100015391 3300005354 Bacteria 6047
12 Ga0070675_100039969 3300005354 Bacteria 3828
13 Ga0070675_100706197 3300005354 Bacteria 919
14 Ga0070674_100079794 3300005356 Bacteria 2336
15 Ga0070673_100363127 3300005364 Bacteria 1288
16 Ga0070673_100705986 3300005364 Unclassified 926
17 Ga0070667_100000996 3300005367 Bacteria 26008
18 Ga0070694_100034512 3300005444 Bacteria 3337
19 Ga0070678_100576153 3300005456 Bacteria 1002
20 Ga0070681_10403016 3300005458 Bacteria 1279
21 Ga0068867_100021213 3300005459 Bacteria 4634
22 Ga0070698_100000114 3300005471 Bacteria 68309
23 Ga0070699_100259120 3300005518 Unclassified 1555
24 Ga0070686_100496543 3300005544 Bacteria 946
25 Ga0070695_100179096 3300005545 Bacteria 1501
26 Ga0070696_100153176 3300005546 Bacteria 1694
27 Ga0070665_100003276 3300005548 Bacteria 17374
28 Ga0068855_100001024 3300005563 Bacteria 34856
29 Ga0068855_100015382 3300005563 Bacteria 9212
30 Ga0068855_100300251 3300005563 Bacteria 1778
31 Ga0068857_100257137 3300005577 Bacteria 1602
32 Ga0068859_100004308 3300005617 Bacteria 14509
33 Ga0068859_100065180 3300005617 Bacteria 3677
34 Ga0068866_10096307 3300005718 Unclassified 1623
35 Ga0068861_100022054 3300005719 Unclassified 4583
36 Ga0068870_10084533 3300005840 Unclassified 1762
37 Ga0068863_100312894 3300005841 Bacteria 1524
38 Ga0068858_100041650 3300005842 Unclassified 4258
39 Ga0068860_100002975 3300005843 Bacteria 17502
40 Ga0068862_100905227 3300005844 Unclassified 867
41 Ga0081540_1003106 3300005983 Bacteria 13305
42 Ga0075366_10039942 3300006195 Bacteria 2774
43 Ga0097621_100073245 3300006237 Bacteria 2835
44 Ga0075431_100921274 3300006847 Bacteria 843
45 Ga0075433_10484910 3300006852 Bacteria 1089
46 Ga0075429_100155243 3300006880 Bacteria 2004
47 Ga0097620_100004308 3300006931 Bacteria 14509
48 Ga0097620_100065178 3300006931 Bacteria 3677
49 Ga0075435_100303075 3300007076 Bacteria 1367
50 Ga0099794_10001728 3300007265 Bacteria 7750
51 Ga0111539_10007270 3300009094 Bacteria 14180
52 Ga0111539_10059802 3300009094 Unclassified 4518
53 Ga0111539_10133670 3300009094 Bacteria 2904
54 Ga0105245_10462214 3300009098 Bacteria 1279
55 Ga0114129_11681933 3300009147 Bacteria 775
56 Ga0105242_10188436 3300009176 Unclassified 1825
57 Ga0105248_10100310 3300009177 Unclassified 3262
58 Ga0105249_10206078 3300009553 Unclassified 1927
59 Ga0105249_10322234 3300009553 Unclassified 1557
60 Ga0157329_1004896 3300012491 Bacteria 885
61 Ga0157378_10057450 3300013297 Bacteria 3468
62 Ga0157378_10647910 3300013297 Bacteria 1072
63 Ga0157375_10424798 3300013308 Unclassified 1495
64 Ga0163163_10145309 3300014325 Bacteria 2415
65 Ga0157379_10000592 3300014968 Bacteria 29338
66 Ga0157379_10241329 3300014968 Unclassified 1639
67 Ga0157376_10127403 3300014969 Bacteria 2266
68 Ga0157376_10561333 3300014969 Bacteria 1131
69 Ga0213872_10130338 3300021361 Bacteria 1108
70 Ga0209233_1001146 3300025261 Bacteria 10809
71 Ga0207645_10218216 3300025907 Bacteria 1257
72 Ga0207643_10012334 3300025908 Unclassified 4620
73 Ga0207662_10084297 3300025918 Bacteria 1944
74 Ga0207681_10004349 3300025923 Bacteria 8742
75 Ga0207650_10029967 3300025925 Unclassified 3916
76 Ga0207659_10036640 3300025926 Bacteria 3400
77 Ga0207687_10151692 3300025927 Unclassified 1769
78 Ga0207687_10605715 3300025927 Bacteria 923
79 Ga0207706_10630354 3300025933 Unclassified 919
80 Ga0207686_10127048 3300025934 Bacteria 1744
81 Ga0207670_10289702 3300025936 Bacteria 1279
82 Ga0207669_10422715 3300025937 Bacteria 1049
83 Ga0207711_10078624 3300025941 Bacteria 2878
84 Ga0207689_10088438 3300025942 Bacteria 2544
85 Ga0207667_10000175 3300025949 Bacteria 93793
86 Ga0207651_10345944 3300025960 Bacteria 1250
87 Ga0207712_10060141 3300025961 Bacteria 2692
88 Ga0207668_10174989 3300025972 Bacteria 1687
89 Ga0207658_10012283 3300025986 Bacteria 5846
90 Ga0207677_10031786 3300026023 Unclassified 3384
91 Ga0207703_10002646 3300026035 Bacteria 15431
92 Ga0207678_10591762 3300026067 Unclassified 972
93 Ga0207641_10155043 3300026088 Bacteria 2077
94 Ga0207648_10005094 3300026089 Bacteria 13316
95 Ga0207676_10013282 3300026095 Bacteria 5916
96 Ga0207674_10011528 3300026116 Bacteria 9930
97 Ga0207683_10067808 3300026121 Bacteria 3148
98 Ga0207683_10420031 3300026121 Bacteria 1232
99 Ga0207428_10111459 3300027907 Bacteria 2105
100 Ga0268266_10042316 3300028379 Bacteria 3890
101 Ga0268264_10000595 3300028381 Bacteria 43795
102 Ga0265337_1014035 3300028556 Bacteria 2667
103 Ga0265334_10005499 3300028573 Bacteria 5534
104 Ga0265338_10065360 3300028800 Bacteria 3156
105 Ga0265328_10062707 3300031239 Bacteria 1365
106 Ga0265328_10101780 3300031239 Bacteria 1064
107 Ga0265320_10000450 3300031240 Bacteria 32290
108 Ga0265325_10028920 3300031241 Bacteria 2983
109 Ga0265325_10192984 3300031241 Unclassified 943
110 Ga0265340_10004098 3300031247 Bacteria 8187
111 Ga0265340_10004781 3300031247 Bacteria 7533
112 Ga0265340_10020853 3300031247 Bacteria 3362
113 Ga0265340_10081174 3300031247 Bacteria 1526
114 Ga0265340_10179143 3300031247 Bacteria 958
115 Ga0265339_10178370 3300031249 Bacteria 1059
116 Ga0265331_10032929 3300031250 Bacteria 2565
117 Ga0265331_10049094 3300031250 Bacteria 2028
118 Ga0265316_10028434 3300031344 Bacteria 4613
119 Ga0307513_10439608 3300031456 Bacteria 1031
120 Ga0265313_10001117 3300031595 Bacteria 25638
121 Ga0265313_10148772 3300031595 Bacteria 1002
122 Ga0265314_10030720 3300031711 Bacteria 3973
123 Ga0265314_10094116 3300031711 Bacteria 1943
124 Ga0265342_10015493 3300031712 Bacteria 5011
125 Ga0373936_0000005 3300035113 Bacteria 325848
126 Ga0373933_0270661 3300035724 Bacteria 1096
127 Ga0373947_0603506 3300035725 Bacteria 748
128 Ga0373937_0277215 3300036401 Unclassified 1583
129 Ga0373937_0326902 3300036401 Unclassified 1451
130 Ga0373937_1155037 3300036401 Bacteria 723
131 Ga0395901_0349418 3300038443 Bacteria 1526
132 Ga0436360_0077855 3300039438 Bacteria 4674
133 Ga0436361_0225091 3300039447 Bacteria 4287
134 Ga0451577_0407326 3300042876 Bacteria 1234
135 Ga0451577_0522514 3300042876 Bacteria 1078
136 Ga0466966_0111051 3300044684 Bacteria 1690
137 Ga0453684_0090281 3300044712 Bacteria 3786
138 Ga0453684_0163018 3300044712 Bacteria 2635
139 Ga0495587_0049476 3300046536 Bacteria 2488
140 Ga0495667_0117770 3300046559 Bacteria 1716
141 Ga0495599_0330868 3300046678 Bacteria 916
142 Ga0495604_0284629 3300047317 Unclassified 1116
143 Ga0495604_0402117 3300047317 Bacteria 902
144 Ga0495674_0125447 3300047319 Bacteria 2167
145 Ga0495675_0099628 3300047444 Bacteria 1820
146 Ga0495602_0093546 3300048088 Bacteria 2487
147 Ga0496102_0438656 3300048905 Bacteria 1226
148 Ga0496104_0275953 3300048907 Bacteria 1594
149 Ga0496106_0085416 3300048909 Unclassified 2430
150 Ga0496108_0293515 3300048911 Unclassified 1416
151 Ga0496109_0132173 3300048912 Unclassified 2330
152 Ga0496110_0529254 3300048913 Unclassified 1072
153 Ga0496126_0369767 3300048929 Unclassified 1169
154 Ga0501034_0223283 3300049571 Bacteria 1836
155 Ga0501067_0065595 3300049583 Unclassified 2010
156 Ga0501069_0057125 3300049585 Unclassified 2175
157 Ga0501070_0005431 3300049586 Bacteria 10882
158 Ga0501070_0057983 3300049586 Unclassified 3210
159 Ga0501074_0058826 3300049590 Bacteria 2769
160 Ga0501077_0080777 3300049593 Bacteria 2060
161 Ga0501083_0059474 3300049744 Unclassified 2556
162 nmdc:mga0k408_50956_c1 3300050493 Bacteria 2397
163 nmdc:mga08y16_193516_c1 3300050511 Bacteria 2109
164 nmdc:mga08y16_74689_c1 3300050511 Unclassified 3533
165 nmdc:mga08y16_82309_c1 3300050511 Bacteria 3355
166 Ga0495601_0177131 3300053077 Bacteria 1394
167 Ga0495612_0086690 3300053078 Bacteria 1321
168 Ga0495595_0089918 3300053084 Bacteria 1472
169 Ga0495619_0106317 3300053085 Bacteria 1914
170 2894511428 2894510363 Bacteria 5121143
171 2935637521 2935630451 Bacteria 8169952
172 2941514106 2941507105 Bacteria 8166816
173 2941522067 2941515067 Bacteria 8166720
174 2941529805 2941523033 Bacteria 8169134
175 8056695562 8056689827 Bacteria 6712655
176 Ga0157369_10552678
177 rootH1_10163542
178 Ga0070670_100053083
179 Ga0070670_100299337
180 Ga0068869_100002559
181 Ga0070682_100098584
182 Ga0070689_100559806
183 Ga0070687_100125567
184 Ga0070668_100300024
185 Ga0070669_100014694
186 Ga0070675_100015391
187 Ga0070675_100039969
188 Ga0070675_100706197
189 Ga0070674_100079794
190 Ga0070673_100363127
191 Ga0070673_100705986
192 Ga0070667_100000996
193 Ga0070694_100034512
194 Ga0070678_100576153
195 Ga0070681_10403016
196 Ga0068867_100021213
197 Ga0070698_100000114
198 Ga0070699_100259120
199 Ga0070686_100496543
200 Ga0070695_100179096
201 Ga0070696_100153176
202 Ga0070665_100003276
203 Ga0068855_100001024
204 Ga0068855_100015382
205 Ga0068855_100300251
206 Ga0068857_100257137
207 Ga0068859_100004308
208 Ga0068859_100065180
209 Ga0068866_10096307
210 Ga0068861_100022054
211 Ga0068870_10084533
212 Ga0068863_100312894
213 Ga0068858_100041650
214 Ga0068860_100002975
215 Ga0068862_100905227
216 Ga0081540_1003106
217 Ga0075366_10039942
218 Ga0097621_100073245
219 Ga0075431_100921274
220 Ga0075433_10484910
221 Ga0075429_100155243
222 Ga0097620_100004308
223 Ga0097620_100065178
224 Ga0075435_100303075
225 Ga0099794_10001728
226 Ga0111539_10007270
227 Ga0111539_10059802
228 Ga0111539_10133670
229 Ga0105245_10462214
230 Ga0114129_11681933
231 Ga0105242_10188436
232 Ga0105248_10100310
233 Ga0105249_10206078
234 Ga0105249_10322234
235 Ga0157329_1004896
236 Ga0157378_10057450
237 Ga0157378_10647910
238 Ga0157375_10424798
239 Ga0163163_10145309
240 Ga0157379_10000592
241 Ga0157379_10241329
242 Ga0157376_10127403
243 Ga0157376_10561333
244 Ga0213872_10130338
245 Ga0209233_1001146
246 Ga0207645_10218216
247 Ga0207643_10012334
248 Ga0207662_10084297
249 Ga0207681_10004349
250 Ga0207650_10029967
251 Ga0207659_10036640
252 Ga0207687_10151692
253 Ga0207687_10605715
254 Ga0207706_10630354
255 Ga0207686_10127048
256 Ga0207670_10289702
257 Ga0207669_10422715
258 Ga0207711_10078624
259 Ga0207689_10088438
260 Ga0207667_10000175
261 Ga0207651_10345944
262 Ga0207712_10060141
263 Ga0207668_10174989
264 Ga0207658_10012283
265 Ga0207677_10031786
266 Ga0207703_10002646
267 Ga0207678_10591762
268 Ga0207641_10155043
269 Ga0207648_10005094
270 Ga0207676_10013282
271 Ga0207674_10011528
272 Ga0207683_10067808
273 Ga0207683_10420031
274 Ga0207428_10111459
275 Ga0268266_10042316
276 Ga0268264_10000595
277 Ga0265337_1014035
278 Ga0265334_10005499
279 Ga0265338_10065360
280 Ga0265328_10062707
281 Ga0265328_10101780
282 Ga0265320_10000450
283 Ga0265325_10028920
284 Ga0265325_10192984
285 Ga0265340_10004098
286 Ga0265340_10004781
287 Ga0265340_10020853
288 Ga0265340_10081174
289 Ga0265340_10179143
290 Ga0265339_10178370
291 Ga0265331_10032929
292 Ga0265331_10049094
293 Ga0265316_10028434
294 Ga0307513_10439608
295 Ga0265313_10001117
296 Ga0265313_10148772
297 Ga0265314_10030720
298 Ga0265314_10094116
299 Ga0265342_10015493
300 Ga0373936_0000005
301 Ga0373933_0270661
302 Ga0373947_0603506
303 Ga0373937_0277215
304 Ga0373937_0326902
305 Ga0373937_1155037
306 Ga0395901_0349418
307 Ga0436360_0077855
308 Ga0436361_0225091
309 Ga0451577_0407326
310 Ga0451577_0522514
311 Ga0466966_0111051
312 Ga0453684_0090281
313 Ga0453684_0163018
314 Ga0495587_0049476
315 Ga0495667_0117770
316 Ga0495599_0330868
317 Ga0495604_0284629
318 Ga0495604_0402117
319 Ga0495674_0125447
320 Ga0495675_0099628
321 Ga0495602_0093546
322 Ga0496102_0438656
323 Ga0496104_0275953
324 Ga0496106_0085416
325 Ga0496108_0293515
326 Ga0496109_0132173
327 Ga0496110_0529254
328 Ga0496126_0369767
329 Ga0501034_0223283
330 Ga0501067_0065595
331 Ga0501069_0057125
332 Ga0501070_0005431
333 Ga0501070_0057983
334 Ga0501074_0058826
335 Ga0501077_0080777
336 Ga0501083_0059474
337 nmdc:mga0k408_50956_c1
338 nmdc:mga08y16_193516_c1
339 nmdc:mga08y16_74689_c1
340 nmdc:mga08y16_82309_c1
341 Ga0495601_0177131
342 Ga0495612_0086690
343 Ga0495595_0089918
344 Ga0495619_0106317
345 2894511428
346 2935637521
347 2941514106
348 2941522067
349 2941529805
350 8056695562

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

53

238

0.94

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

59

245

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9386 3 230
3tfo-assembly1.cif.gz_D crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9365 4 231
5cdy-assembly1.cif.gz_C the crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (fabg) from yersinia pestis at 2.85a resolution 0.9342 4 226
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9302 3 230
3p19-assembly1.cif.gz_B improved nadph-dependent blue fluorescent protein 0.9299 3 231
ID Description Score Start End Superfamily
af_Q54Q52_3_240_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.944 3 233 3.40.50.720
af_F4J128_251_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9438 89 184 3.40.50.720
af_A0A0P0Y501_3_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9426 4 181 3.40.50.720
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9386 3 230 3.40.50.720
3p19C00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9322 3 231 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7C8D7N7-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9908 6 233
AF-A0A3B8K5V9-F1-model_v4 Short-chain dehydrogenase 0.9907 3 233
AF-A0A520M5J6-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9906 1 233
AF-A0A3D1RUU7-F1-model_v4 Short-chain dehydrogenase 0.9902 34 233
AF-A0A0U5DYQ6-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9875 1 233

Map