F260999

General Info

Members Datasets Scaffolds Average Seq Length
172 137 336 282

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100001631|Ga0307408_1000016313
Length 307
Sequence MASSSASXXDSRPDDTLATAQRSSAARQAITPELRRWIIEQAQAGYAAPVVLQSMRDAGWDEDVAAEAMEVTLQDHLNALAMQQGQPPAVPVPEPQLNDSPAQVDCGDRTVNVLLAMAQPRIVVFSNLLSPEECDALIAAAGPRMARSLTVATKTGGEEINDDRTSDGMFFQRGESPLIQRIEERIARLLQWPIENGEGLQVLHYRPGAEYKPHYDYFDPGEPGTPTIVQRGGQRVGTLVMYLNTPEKGGGTTFPDVHLEVAPQRGNAVFFSYERPHPSTRTLHGGAPVIAGEKWIATKWLREREFK

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
26 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
27 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
36 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
37 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
38 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
39 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
40 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
41 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
42 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
67 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
77 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
78 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
79 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
84 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
85 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
90 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
91 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
92 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
93 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
94 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
95 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
96 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
102 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
105 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
108 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
109 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
110 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
111 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
112 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
115 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
116 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
117 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
118 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
119 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
120 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
121 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
122 2547132374 Acidovorax radicis N35 Isolate Unclassified
123 2643221570 Acidovorax sp. Root568 Isolate Unclassified
124 2643221596 Acidovorax sp. Root70 Isolate Unclassified
125 2643221609 Acidovorax sp. Root217 Isolate Unclassified
126 2643221611 Acidovorax sp. Root219 Isolate Unclassified
127 2643221652 Acidovorax sp. Root402 Isolate Unclassified
128 2643221717 Acidovorax sp. Root267 Isolate Unclassified
129 2721755523 Delftia sp. HK171 Isolate Unclassified
130 2738543012 Acidovorax sp. CF301 Isolate Unclassified
131 2816332133 Acidovorax radicis 2721A Isolate Unclassified
132 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
133 2842733646 Variovorax sp. R-72446 Isolate Unclassified
134 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
135 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
136 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
137 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.12
Metatranscriptomes 0
Isolates 9.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 31.98
Nodule 1.16
Rhizoplane 2.91
Rhizosphere 51.16
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100001631 3300031548 Bacteria 16601
2 JGI25155J39150_1000223 3300002704 Bacteria 22401
3 JGI25156J39149_1000045 3300002705 Bacteria 104173
4 JGI25154J39366_1000064 3300002738 Bacteria 104148
5 JGI25157J39369_1000063 3300002741 Bacteria 104173
6 JGI25150J39212_1002055 3300002774 Bacteria 5234
7 JGI25159J45721_1000798 3300002987 Bacteria 13721
8 JGI25160J50197_1000316 3300003354 Bacteria 33601
9 JGI25161J50226_1000236 3300003374 Bacteria 33595
10 Ga0055530_10016933 3300003791 Bacteria 2300
11 Ga0055540_1005628 3300003792 Bacteria 5207
12 Ga0055531_10002201 3300003794 Bacteria 13271
13 Ga0055543_1000605 3300004625 Bacteria 19442
14 Ga0065165_1034829 3300005262 Bacteria 1552
15 Ga0065165_1035683 3300005262 Bacteria 1524
16 Ga0070670_100264915 3300005331 Bacteria 1499
17 Ga0068868_100179298 3300005338 Bacteria 1757
18 Ga0068868_100299038 3300005338 Bacteria 1366
19 Ga0070660_100034901 3300005339 Bacteria 3803
20 Ga0070679_100017983 3300005530 Bacteria 6850
21 Ga0068853_100528479 3300005539 Bacteria 1116
22 Ga0068855_100089769 3300005563 Bacteria 3547
23 Ga0068855_100134242 3300005563 Bacteria 2824
24 Ga0068855_100159816 3300005563 Bacteria 2558
25 Ga0068856_100041174 3300005614 Bacteria 4539
26 Ga0075365_10073268 3300006038 Bacteria 2308
27 Ga0075365_10128478 3300006038 Bacteria 1752
28 Ga0075362_10009767 3300006177 Bacteria 3722
29 Ga0075362_10067890 3300006177 Bacteria 1623
30 Ga0075366_10143651 3300006195 Bacteria 1443
31 Ga0075366_10178574 3300006195 Bacteria 1289
32 Ga0075370_10004039 3300006353 Bacteria 7056
33 Ga0075370_10005864 3300006353 Bacteria 6139
34 Ga0079104_1000002 3300006946 Bacteria 514469
35 Ga0105250_10000528 3300009092 Bacteria 26590
36 Ga0105240_10025332 3300009093 Bacteria 7798
37 Ga0105243_10002695 3300009148 Bacteria 14753
38 Ga0105238_10084588 3300009551 Bacteria 3162
39 Ga0163162_10214499 3300013306 Bacteria 2055
40 Ga0163162_10623069 3300013306 Bacteria 1204
41 Ga0157375_10178868 3300013308 Bacteria 2272
42 Ga0182008_10000345 3300014497 Bacteria 36123
43 Ga0157376_10007388 3300014969 Bacteria 7839
44 Ga0157376_10019400 3300014969 Bacteria 5240
45 Ga0183362_10005 3300015683 Bacteria 437616
46 Ga0209435_100003 3300025206 Bacteria 669534
47 Ga0207425_1001045 3300025245 Bacteria 12825
48 Ga0209646_1000008 3300025246 Bacteria 669534
49 Ga0209026_1000007 3300025250 Bacteria 669534
50 Ga0209759_1000019 3300025256 Bacteria 357908
51 Ga0209129_1009440 3300025258 Bacteria 2570
52 Ga0209673_1012384 3300025273 Bacteria 3438
53 Ga0209673_1031667 3300025273 Bacteria 1641
54 Ga0209130_1000181 3300025284 Bacteria 89402
55 Ga0209676_1002838 3300025292 Bacteria 11456
56 Ga0209025_1000404 3300025294 Bacteria 87744
57 Ga0209025_1005231 3300025294 Bacteria 10695
58 Ga0209025_1044347 3300025294 Bacteria 1860
59 Ga0209564_1005171 3300025295 Bacteria 7569
60 Ga0209758_1005442 3300025297 Bacteria 9804
61 Ga0209050_1012951 3300025298 Bacteria 3769
62 Ga0209050_1014072 3300025298 Bacteria 3483
63 Ga0207426_1000117 3300025302 Bacteria 224652
64 Ga0209051_1000315 3300025303 Bacteria 73579
65 Ga0209257_1000309 3300025304 Bacteria 104166
66 Ga0207656_10051348 3300025321 Bacteria 1783
67 Ga0207696_1017811 3300025711 Bacteria 2344
68 Ga0207695_10068428 3300025913 Bacteria 3638
69 Ga0207660_10082454 3300025917 Bacteria 2366
70 Ga0207657_10014874 3300025919 Bacteria 7571
71 Ga0207652_10163497 3300025921 Bacteria 1995
72 Ga0207687_10119181 3300025927 Bacteria 1971
73 Ga0207709_10000015 3300025935 Bacteria 493221
74 Ga0207667_10060712 3300025949 Bacteria 3957
75 Ga0207667_10061838 3300025949 Bacteria 3917
76 Ga0207658_10009017 3300025986 Bacteria 6766
77 Ga0207677_10101202 3300026023 Bacteria 2121
78 Ga0207639_10045776 3300026041 Bacteria 3298
79 Ga0207639_10459193 3300026041 Bacteria 1158
80 Ga0207702_10029814 3300026078 Bacteria 4542
81 Ga0207683_10147609 3300026121 Bacteria 2122
82 Ga0209281_1000007 3300027111 Bacteria 938265
83 Ga0209974_10057301 3300027876 Bacteria 1316
84 Ga0265328_10015400 3300031239 Bacteria 2995
85 Ga0265328_10018362 3300031239 Bacteria 2698
86 Ga0265327_10000184 3300031251 Bacteria 133023
87 Ga0265327_10005786 3300031251 Bacteria 10168
88 Ga0307513_10000020 3300031456 Bacteria 228745
89 Ga0307408_100140476 3300031548 Bacteria 1895
90 Ga0307406_10014564 3300031901 Bacteria 4528
91 Ga0307416_100514887 3300032002 Bacteria 1263
92 Ga0395900_0161113 3300037418 Bacteria 2288
93 Ga0395898_0078236 3300037466 Bacteria 3191
94 Ga0395905_0000088 3300037471 Bacteria 152506
95 Ga0395905_0001245 3300037471 Bacteria 31535
96 Ga0395905_0001290 3300037471 Bacteria 30783
97 Ga0395905_0107940 3300037471 Bacteria 2613
98 Ga0395905_0114455 3300037471 Bacteria 2534
99 Ga0395901_0052166 3300038443 Bacteria 4251
100 Ga0436361_0399085 3300039447 Bacteria 26839
101 Ga0451853_1169730 3300041512 Bacteria 1089
102 Ga0439459_0064430 3300042438 Bacteria 835
103 Ga0451577_0013295 3300042876 Bacteria 7710
104 Ga0466969_0037078 3300044656 Bacteria 2460
105 Ga0466972_0141034 3300044658 Bacteria 1134
106 Ga0466965_0022589 3300044683 Bacteria 3033
107 Ga0466966_0009243 3300044684 Bacteria 6526
108 Ga0466961_0022762 3300044693 Bacteria 4030
109 Ga0466961_0146535 3300044693 Bacteria 1476
110 Ga0453684_0012259 3300044712 Bacteria 14195
111 Ga0466959_0045797 3300045049 Bacteria 3220
112 Ga0451576_0131400 3300045051 Bacteria 2610
113 Ga0495663_0024139 3300046525 Bacteria 1766
114 Ga0495642_0007776 3300046528 Bacteria 4107
115 Ga0495654_0007992 3300046530 Bacteria 5874
116 Ga0495598_0124976 3300046537 Bacteria 876
117 Ga0495656_0012228 3300046615 Bacteria 3163
118 Ga0495588_0136532 3300046674 Bacteria 1295
119 Ga0495636_0062871 3300047318 Bacteria 1572
120 Ga0495685_010166 3300047447 Bacteria 3154
121 Ga0496102_0024071 3300048905 Bacteria 5412
122 Ga0496104_0016419 3300048907 Bacteria 6725
123 Ga0496105_0054956 3300048908 Bacteria 3287
124 Ga0496109_0080007 3300048912 Bacteria 3011
125 Ga0496111_0038475 3300048914 Bacteria 3428
126 Ga0501037_0089909 3300049573 Bacteria 2222
127 Ga0501047_0034648 3300049581 Bacteria 4875
128 Ga0501198_000036 3300049649 Bacteria 53635
129 Ga0501222_000050 3300049662 Bacteria 43812
130 Ga0501044_0401940 3300049823 Bacteria 1282
131 nmdc:mga03683_11512_c1 3300050489 Bacteria 3205
132 nmdc:mga03683_28225_c1 3300050489 Bacteria 2230
133 nmdc:mga03n38_99306_c1 3300050490 Bacteria 1401
134 nmdc:mga0yw44_119618_c1 3300050492 Bacteria 1695
135 nmdc:mga0yw44_22092_c1 3300050492 Bacteria 3561
136 nmdc:mga0k408_20581_c1 3300050493 Bacteria 3698
137 nmdc:mga0k408_36723_c1 3300050493 Bacteria 2812
138 nmdc:mga0k408_58039_c1 3300050493 Bacteria 2248
139 nmdc:mga07m45_192363_c1 3300050496 Bacteria 1187
140 nmdc:mga07m45_246079_c1 3300050496 Bacteria 1040
141 Ga0500644_0014905 3300053088 Bacteria 2204
142 Ga0500583_0216250 3300053092 Bacteria 951
143 Ga0500566_0054821 3300053094 Bacteria 2272
144 Ga0500650_0075221 3300053098 Bacteria 1579
145 Ga0500593_003215 3300053117 Bacteria 6131
146 Ga0500618_004209 3300053125 Bacteria 4677
147 Ga0500628_008001 3300053129 Bacteria 1826
148 Ga0500645_000090 3300053730 Bacteria 70818
149 Ga0500645_001944 3300053730 Bacteria 9800
150 Ga0500645_006454 3300053730 Bacteria 4185
151 Ga0500661_005053 3300055283 Bacteria 2473
152 2511244348 2511231002 Bacteria 5042903
153 2548499927 2547132374 Bacteria 5530232
154 2643868158 2643221570 Bacteria 5103772
155 2643993847 2643221596 Bacteria 5006805
156 2644059720 2643221609 Bacteria 6756331
157 2644074863 2643221611 Bacteria 6820941
158 2644293765 2643221652 Bacteria 5140275
159 2644644755 2643221717 Bacteria 5676132
160 2722882206 2721755523 Bacteria 6430384
161 2739241248 2738543012 Bacteria 7115078
162 2816473414 2816332133 Bacteria 7249298
163 2839138360 2839138175 Bacteria 6549354
164 2842734242 2842733646 Bacteria 5716726
165 2904549837 2904541872 Bacteria 8915136
166 2928117609 2928115317 Bacteria 6477646
167 2929161807 2929160207 Bacteria 9075316
168 2990713483 2990710928 Bacteria 5002431
169 Ga0307408_100001631
170 JGI25155J39150_1000223
171 JGI25156J39149_1000045
172 JGI25154J39366_1000064
173 JGI25157J39369_1000063
174 JGI25150J39212_1002055
175 JGI25159J45721_1000798
176 JGI25160J50197_1000316
177 JGI25161J50226_1000236
178 Ga0055530_10016933
179 Ga0055540_1005628
180 Ga0055531_10002201
181 Ga0055543_1000605
182 Ga0065165_1034829
183 Ga0065165_1035683
184 Ga0070670_100264915
185 Ga0068868_100179298
186 Ga0068868_100299038
187 Ga0070660_100034901
188 Ga0070679_100017983
189 Ga0068853_100528479
190 Ga0068855_100089769
191 Ga0068855_100134242
192 Ga0068855_100159816
193 Ga0068856_100041174
194 Ga0075365_10073268
195 Ga0075365_10128478
196 Ga0075362_10009767
197 Ga0075362_10067890
198 Ga0075366_10143651
199 Ga0075366_10178574
200 Ga0075370_10004039
201 Ga0075370_10005864
202 Ga0079104_1000002
203 Ga0105250_10000528
204 Ga0105240_10025332
205 Ga0105243_10002695
206 Ga0105238_10084588
207 Ga0163162_10214499
208 Ga0163162_10623069
209 Ga0157375_10178868
210 Ga0182008_10000345
211 Ga0157376_10007388
212 Ga0157376_10019400
213 Ga0183362_10005
214 Ga0209435_100003
215 Ga0207425_1001045
216 Ga0209646_1000008
217 Ga0209026_1000007
218 Ga0209759_1000019
219 Ga0209129_1009440
220 Ga0209673_1012384
221 Ga0209673_1031667
222 Ga0209130_1000181
223 Ga0209676_1002838
224 Ga0209025_1000404
225 Ga0209025_1005231
226 Ga0209025_1044347
227 Ga0209564_1005171
228 Ga0209758_1005442
229 Ga0209050_1012951
230 Ga0209050_1014072
231 Ga0207426_1000117
232 Ga0209051_1000315
233 Ga0209257_1000309
234 Ga0207656_10051348
235 Ga0207696_1017811
236 Ga0207695_10068428
237 Ga0207660_10082454
238 Ga0207657_10014874
239 Ga0207652_10163497
240 Ga0207687_10119181
241 Ga0207709_10000015
242 Ga0207667_10060712
243 Ga0207667_10061838
244 Ga0207658_10009017
245 Ga0207677_10101202
246 Ga0207639_10045776
247 Ga0207639_10459193
248 Ga0207702_10029814
249 Ga0207683_10147609
250 Ga0209281_1000007
251 Ga0209974_10057301
252 Ga0265328_10015400
253 Ga0265328_10018362
254 Ga0265327_10000184
255 Ga0265327_10005786
256 Ga0307513_10000020
257 Ga0307408_100140476
258 Ga0307406_10014564
259 Ga0307416_100514887
260 Ga0395900_0161113
261 Ga0395898_0078236
262 Ga0395905_0000088
263 Ga0395905_0001245
264 Ga0395905_0001290
265 Ga0395905_0107940
266 Ga0395905_0114455
267 Ga0395901_0052166
268 Ga0436361_0399085
269 Ga0451853_1169730
270 Ga0439459_0064430
271 Ga0451577_0013295
272 Ga0466969_0037078
273 Ga0466972_0141034
274 Ga0466965_0022589
275 Ga0466966_0009243
276 Ga0466961_0022762
277 Ga0466961_0146535
278 Ga0453684_0012259
279 Ga0466959_0045797
280 Ga0451576_0131400
281 Ga0495663_0024139
282 Ga0495642_0007776
283 Ga0495654_0007992
284 Ga0495598_0124976
285 Ga0495656_0012228
286 Ga0495588_0136532
287 Ga0495636_0062871
288 Ga0495685_010166
289 Ga0496102_0024071
290 Ga0496104_0016419
291 Ga0496105_0054956
292 Ga0496109_0080007
293 Ga0496111_0038475
294 Ga0501037_0089909
295 Ga0501047_0034648
296 Ga0501198_000036
297 Ga0501222_000050
298 Ga0501044_0401940
299 nmdc:mga03683_11512_c1
300 nmdc:mga03683_28225_c1
301 nmdc:mga03n38_99306_c1
302 nmdc:mga0yw44_119618_c1
303 nmdc:mga0yw44_22092_c1
304 nmdc:mga0k408_20581_c1
305 nmdc:mga0k408_36723_c1
306 nmdc:mga0k408_58039_c1
307 nmdc:mga07m45_192363_c1
308 nmdc:mga07m45_246079_c1
309 Ga0500644_0014905
310 Ga0500583_0216250
311 Ga0500566_0054821
312 Ga0500650_0075221
313 Ga0500593_003215
314 Ga0500618_004209
315 Ga0500628_008001
316 Ga0500645_000090
317 Ga0500645_001944
318 Ga0500645_006454
319 Ga0500661_005053
320 2511244348
321 2548499927
322 2643868158
323 2643993847
324 2644059720
325 2644074863
326 2644293765
327 2644644755
328 2722882206
329 2739241248
330 2816473414
331 2839138360
332 2842734242
333 2904549837
334 2928117609
335 2929161807
336 2990713483

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13640

2OG-FeII_Oxy_3

2OG-Fe(II) oxygenase superfamily

200

302

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gze-assembly2.cif.gz_C algal prolyl 4-hydroxylase complexed with zinc and (ser-pro)5 peptide substrate 0.8531 82 263
5iav-assembly1.cif.gz_B mechanistic and structural analysis of substrate recognition and cofactor binding by an unusual bacterial prolyl hydroxylase - co-bap4h-mli 0.8038 67 265
5v7y-assembly3.cif.gz_D prolyl 4-hydroxylase interacts with and modifies elongation factor tu 0.7931 63 265
5hv4-assembly1.cif.gz_A-2 crystal structure of a prolyl 4-hydroxylase complexed with alpha-ketoglutarate from the pathogenic bacterium bacillus anthracis in c2221 0.7875 61 261
5iax-assembly1.cif.gz_A mechanistic and structural analysis of substrate recognition and cofactor binding by an unusual bacterial prolyl hydroxylase - co-bap4h-ppg 0.7846 63 264
ID Description Score Start End Superfamily
af_Q9VA52_315_509_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8465 82 259 2.60.120.620
af_Q0KHY7_306_495_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.846 80 260 2.60.120.620
af_A0A1D6EDJ6_1_177_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8424 108 260 2.60.120.620
af_Q17985_74_276_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8362 80 260 2.60.120.620
af_Q9I7H5_312_504_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8354 80 260 2.60.120.620
ID Description Score Start End GO Terms
AF-A0A452ZDQ3-F1-model_v4 Prolyl 4-hydroxylase alpha subunit domain-containing protein 0.9592 90 224 GO:0004656
GO:0005506
GO:0005789
GO:0031418
AF-A0A7C9CTF6-F1-model_v4 Procollagen-proline 4-dioxygenase (EC 1.14.11.2) 0.9483 89 223 GO:0004656
GO:0005506
GO:0005789
GO:0031418
AF-A0A287E945-F1-model_v4 deleted 0.9471 82 224
AF-A0A287SNB0-F1-model_v4 deleted 0.9448 82 224
AF-A0A7C8YM77-F1-model_v4 Procollagen-proline 4-dioxygenase (EC 1.14.11.2) 0.9433 82 224 GO:0004656
GO:0005506
GO:0005789
GO:0031418

Map