F257530

General Info

Members Datasets Scaffolds Average Seq Length
170 146 340 526

Family's Representative Sequence

Representative Sequence 3300048929|Ga0496126_0109625|Ga0496126_0109625_236_2038
Length 572
Sequence MLKAQRKSPARGMAKEIKFGNEARALMLNGVNKLADAVQVTLGPKGRTVCIQSPYGSPKITKDGVSVAKAIELPDRYENIGAQLIKSVAQKTNDMAGDGTTTSTVLARAIYSRAVEVIDRKNLNPTDIRRGIEAAVTHVIGVLKQQTRPVVRQEEIAQVATISANGDVEIGQLIASAMERVGKEGVITVQEGKSINDELEVVEGMRLDRGFLSPYFITNPKNQKVEYENPLILLVNAKVNSINELVPTFECAVKAGRPFIVIAEDVEGEAIAALVLNKLRGTARVAALKAPGFGENRKKTLQDIAILTGATVVDPELDMQLSEMGPEVFGSCKKIIISKDDSVIMDGSGSPTEIEARCEELRSSIKDANSDYEREKVQERLAKLSGGVAVIRVGGLSEVEVGEKKDRIDDALNAAKVAQEEGILPGGGSALLYASSTLGDVRARMANRDQQIGVEIVQKAIQVPAFAILDNAGLDAQLIVDQLLDEANGDVLATAGIDFRVPIESHQRYKVVDMFEAGIIDPTKVVRSALQDAAGVASLLCTSEAVITALPDPAVFGGPPPGQLPRGLSNQF

Samples

Sample ID Description Type Environment
1 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
4 3300002868 Avena fatua rhizosphere microbial communities - H2_Bulk_Litter_10 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
5 3300003161 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_8 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
6 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
7 3300003300 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_1 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
8 3300003305 Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_13 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
9 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
10 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
12 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
13 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
17 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
18 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
19 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
20 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300029276 Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.ctcc.R1 Metatranscriptome Rhizosphere
70 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
71 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
72 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
73 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
74 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
75 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
76 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
77 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
78 3300031636 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
79 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
86 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
87 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
93 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
94 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
97 3300036457 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
99 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
102 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
103 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
104 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
105 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
106 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
107 3300044660 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3E1 Metagenome Unclassified
108 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
109 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
110 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
111 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
112 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
113 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
114 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
115 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
116 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
119 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
124 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
125 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
129 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
130 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
131 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
132 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
133 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
134 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
135 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
138 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
139 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
140 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
141 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
142 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
143 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
144 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
145 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
146 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.76
Metatranscriptomes 13.53
Isolates 4.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.18
Nodule 0
Rhizoplane 2.35
Rhizosphere 84.71
Stem 0
Stem Tuber 0
Unclassified 1.18

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496126_0109625 3300048929 Unclassified 2406
2 JGI24736J21556_1000969 3300001904 Bacteria 5289
3 JGI24752J21851_1002190 3300001976 Bacteria 2609
4 Ga0006767J43181_103272 3300002868 Bacteria 1917
5 Ga0006765J45826_109119 3300003161 Bacteria 2051
6 Ga0006759J45824_1006381 3300003163 Bacteria 2064
7 Ga0006758J48902_1007557 3300003300 Bacteria 1940
8 Ga0006770J48903_1017953 3300003305 Bacteria 2032
9 Ga0007410J51695_1039098 3300003574 Eukaryota 1911
10 Ga0032354_1005656 3300003693 Bacteria 2064
11 Ga0058859_10040198 3300004798 Bacteria 1862
12 Ga0058860_10172198 3300004801 Bacteria 2543
13 Ga0065707_10085652 3300005295 Bacteria 5992
14 Ga0065707_10091251 3300005295 Bacteria 3980
15 Ga0070658_10001955 3300005327 Bacteria 17333
16 Ga0070676_10034464 3300005328 Bacteria 2907
17 Ga0070690_100000913 3300005330 Bacteria 15074
18 Ga0070690_100006172 3300005330 Bacteria 6792
19 Ga0070689_100000003 3300005340 Bacteria 579260
20 Ga0070692_10003362 3300005345 Bacteria 6476
21 Ga0070668_100023006 3300005347 Bacteria 4711
22 Ga0070669_100033362 3300005353 Bacteria 3723
23 Ga0070674_100004366 3300005356 Bacteria 8060
24 Ga0070673_100002681 3300005364 Bacteria 10900
25 Ga0070667_100027699 3300005367 Bacteria 4715
26 Ga0070667_100063745 3300005367 Bacteria 3124
27 Ga0070694_100048333 3300005444 Bacteria 2862
28 Ga0068867_100006558 3300005459 Bacteria 8220
29 Ga0070685_10052384 3300005466 Bacteria 2362
30 Ga0070679_100009362 3300005530 Bacteria 9264
31 Ga0070679_100013604 3300005530 Bacteria 7796
32 Ga0070679_100120628 3300005530 Bacteria 2607
33 Ga0068853_100001449 3300005539 Bacteria 17187
34 Ga0068855_100000853 3300005563 Bacteria 37833
35 Ga0068855_100130390 3300005563 Bacteria 2872
36 Ga0068856_100030060 3300005614 Bacteria 5310
37 Ga0070702_100079863 3300005615 Bacteria 1956
38 Ga0068859_100122016 3300005617 Bacteria 2672
39 Ga0068862_100015216 3300005844 Bacteria 6388
40 Ga0075430_100056168 3300006846 Bacteria 3310
41 Ga0097620_100122021 3300006931 Bacteria 2672
42 Ga0105240_10004219 3300009093 Bacteria 21976
43 Ga0111539_10003100 3300009094 Bacteria 22025
44 Ga0114129_10037550 3300009147 Bacteria 6838
45 Ga0105237_10000209 3300009545 Bacteria 83491
46 Ga0105238_10098888 3300009551 Bacteria 2901
47 Ga0105246_10039480 3300011119 Bacteria 3180
48 Ga0157378_10041754 3300013297 Bacteria 4069
49 Ga0163163_10026278 3300014325 Bacteria 5563
50 Ga0206351_10332866 3300020077 Eukaryota 2194
51 Ga0154015_1223862 3300020610 Bacteria 2271
52 Ga0207680_10000176 3300025903 Bacteria 31061
53 Ga0207645_10002793 3300025907 Bacteria 13589
54 Ga0207695_10004961 3300025913 Bacteria 17918
55 Ga0207671_10000072 3300025914 Bacteria 159539
56 Ga0207662_10010240 3300025918 Bacteria 5172
57 Ga0207652_10018099 3300025921 Bacteria 5776
58 Ga0207652_10034120 3300025921 Bacteria 4287
59 Ga0207694_10071322 3300025924 Bacteria 2714
60 Ga0207650_10067108 3300025925 Bacteria 2691
61 Ga0207670_10000006 3300025936 Bacteria 401723
62 Ga0207670_10014360 3300025936 Bacteria 4700
63 Ga0207669_10001360 3300025937 Bacteria 10413
64 Ga0207691_10012029 3300025940 Bacteria 8301
65 Ga0207667_10000358 3300025949 Bacteria 61982
66 Ga0207712_10050683 3300025961 Bacteria 2900
67 Ga0207703_10082782 3300026035 Bacteria 2679
68 Ga0207639_10005037 3300026041 Bacteria 8898
69 Ga0207708_10001470 3300026075 Bacteria 17621
70 Ga0207702_10029882 3300026078 Bacteria 4537
71 Ga0207674_10075358 3300026116 Bacteria 3384
72 Ga0207675_100005929 3300026118 Bacteria 11659
73 Ga0207428_10006648 3300027907 Bacteria 10615
74 Ga0268264_10106502 3300028381 Bacteria 2447
75 Ga0265318_10000001 3300028577 Bacteria 500711
76 Ga0265338_10004317 3300028800 Bacteria 19282
77 Ga0265338_10025749 3300028800 Bacteria 5960
78 Ga0311004_101919 3300029276 Eukaryota 2286
79 Ga0265330_10000023 3300031235 Bacteria 150143
80 Ga0265332_10000122 3300031238 Bacteria 65400
81 Ga0265320_10000007 3300031240 Bacteria 331219
82 Ga0265320_10013799 3300031240 Bacteria 4631
83 Ga0265329_10019772 3300031242 Bacteria 2282
84 Ga0265339_10014869 3300031249 Bacteria 4680
85 Ga0265331_10000001 3300031250 Bacteria 798836
86 Ga0265331_10000660 3300031250 Bacteria 29797
87 Ga0265327_10000983 3300031251 Bacteria 40566
88 Ga0265313_10000018 3300031595 Bacteria 151941
89 Ga0310113_101650 3300031636 Eukaryota 2199
90 Ga0316575_10004063 3300031665 Bacteria 5128
91 Ga0265314_10000006 3300031711 Bacteria 540431
92 Ga0265314_10003512 3300031711 Bacteria 15124
93 Ga0265342_10000197 3300031712 Bacteria 67291
94 Ga0265342_10004726 3300031712 Bacteria 10601
95 Ga0307405_10003157 3300031731 Bacteria 7498
96 Ga0307518_10020253 3300031838 Bacteria 4778
97 Ga0307410_10016862 3300031852 Bacteria 4368
98 Ga0307415_100041417 3300032126 Bacteria 3058
99 Ga0316583_10009085 3300032133 Bacteria 3585
100 Ga0316593_10013204 3300032168 Bacteria 2441
101 Ga0316593_10019528 3300032168 Bacteria 2095
102 Ga0316593_10029845 3300032168 Bacteria 1766
103 Ga0316592_1008005 3300033524 Bacteria 2076
104 Ga0316586_1002355 3300033527 Bacteria 2345
105 Ga0316586_1002507 3300033527 Bacteria 2295
106 Ga0316587_1003939 3300033529 Bacteria 2120
107 Ga0316596_1006057 3300033541 Bacteria 2795
108 Ga0316596_1011100 3300033541 Bacteria 2194
109 Ga0373951_0004960 3300035091 Bacteria 3120
110 Ga0373955_0056106 3300035172 Bacteria 2160
111 Ga0316574_0008210 3300035398 Bacteria 5783
112 Ga0373933_0000529 3300035724 Bacteria 23782
113 Ga0373937_0029832 3300036401 Bacteria 4940
114 Ga0265778_000395 3300036457 Bacteria 3386
115 Ga0316584_0018343 3300036712 Bacteria 5047
116 Ga0395899_0003503 3300037312 Bacteria 12434
117 Ga0395900_0181263 3300037418 Bacteria 2140
118 Ga0400490_52136 3300038726 Bacteria 70831
119 Ga0400485_03454 3300038735 Bacteria 57964
120 Ga0400483_023310 3300039062 Bacteria 8979
121 Ga0400483_046826 3300039062 Bacteria 3107
122 Ga0400487_24528 3300039110 Bacteria 31998
123 Ga0400487_29372 3300039110 Bacteria 42587
124 Ga0436365_0238529 3300039437 Bacteria 5178
125 Ga0436360_0973918 3300039438 Bacteria 3557
126 Ga0466974_0098009 3300044660 Eukaryota 1945
127 Ga0453684_0010923 3300044712 Bacteria 15366
128 Ga0453684_0304187 3300044712 Bacteria 1811
129 Ga0451576_0002260 3300045051 Bacteria 29434
130 Ga0451576_0057703 3300045051 Bacteria 4058
131 Ga0495592_0000583 3300046454 Bacteria 25922
132 Ga0495629_0052244 3300046459 Bacteria 2860
133 Ga0495628_0014012 3300046516 Bacteria 6731
134 Ga0495640_0019751 3300046533 Bacteria 4971
135 Ga0495586_0005033 3300046535 Bacteria 7074
136 Ga0495621_0000035 3300046539 Bacteria 26331
137 Ga0495634_0003157 3300046642 Bacteria 13344
138 Ga0495625_0000909 3300046660 Bacteria 39875
139 Ga0495658_0004819 3300046683 Bacteria 6617
140 Ga0495613_0042027 3300046689 Bacteria 3383
141 Ga0495674_0003749 3300047319 Bacteria 14784
142 Ga0495680_0001327 3300047322 Bacteria 26985
143 Ga0496107_0015234 3300048910 Eukaryota 5387
144 Ga0496108_0059185 3300048911 Bacteria 3221
145 Ga0496109_0081449 3300048912 Bacteria 2983
146 Ga0496114_0000372 3300048917 Bacteria 33064
147 Ga0496116_0030918 3300048919 Bacteria 3841
148 Ga0496117_0000706 3300048920 Bacteria 52898
149 Ga0496122_0014705 3300048925 Eukaryota 7546
150 Ga0496123_0070414 3300048926 Bacteria 2189
151 Ga0496125_0041036 3300048928 Bacteria 3961
152 Ga0496126_0018393 3300048929 Unclassified 6925
153 Ga0501067_0018337 3300049583 Bacteria 3877
154 Ga0501067_0018720 3300049583 Bacteria 3833
155 nmdc:mga05p37_16276_c1 3300050507 Bacteria 8954
156 nmdc:mga0qj67_44762_c1 3300050509 Bacteria 3490
157 nmdc:mga08y16_24263_c1 3300050511 Bacteria 6401
158 nmdc:mga08y16_5700_c1 3300050511 Bacteria 13048
159 nmdc:mga0n895_225677_c1 3300050512 Bacteria 1901
160 nmdc:mga0a205_57191_c1 3300050515 Bacteria 3766
161 Ga0500616_0009743 3300053153 Bacteria 5805
162 Ga0500622_0043032 3300053156 Bacteria 2343
163 2508850271 2508501071 Bacteria 5454741
164 2547372971 2547132103 Bacteria 5115736
165 2656280098 2654587920 Bacteria 5475511
166 2689442729 2687453601 Bacteria 5546041
167 2843693474 2843690924 Bacteria 5169057
168 2846034092 2846033681 Bacteria 4377894
169 2891674073 2891670763 Bacteria 4967099
170 2908671701 2908669403 Bacteria 5740494
171 Ga0496126_0109625
172 JGI24736J21556_1000969
173 JGI24752J21851_1002190
174 Ga0006767J43181_103272
175 Ga0006765J45826_109119
176 Ga0006759J45824_1006381
177 Ga0006758J48902_1007557
178 Ga0006770J48903_1017953
179 Ga0007410J51695_1039098
180 Ga0032354_1005656
181 Ga0058859_10040198
182 Ga0058860_10172198
183 Ga0065707_10085652
184 Ga0065707_10091251
185 Ga0070658_10001955
186 Ga0070676_10034464
187 Ga0070690_100000913
188 Ga0070690_100006172
189 Ga0070689_100000003
190 Ga0070692_10003362
191 Ga0070668_100023006
192 Ga0070669_100033362
193 Ga0070674_100004366
194 Ga0070673_100002681
195 Ga0070667_100027699
196 Ga0070667_100063745
197 Ga0070694_100048333
198 Ga0068867_100006558
199 Ga0070685_10052384
200 Ga0070679_100009362
201 Ga0070679_100013604
202 Ga0070679_100120628
203 Ga0068853_100001449
204 Ga0068855_100000853
205 Ga0068855_100130390
206 Ga0068856_100030060
207 Ga0070702_100079863
208 Ga0068859_100122016
209 Ga0068862_100015216
210 Ga0075430_100056168
211 Ga0097620_100122021
212 Ga0105240_10004219
213 Ga0111539_10003100
214 Ga0114129_10037550
215 Ga0105237_10000209
216 Ga0105238_10098888
217 Ga0105246_10039480
218 Ga0157378_10041754
219 Ga0163163_10026278
220 Ga0206351_10332866
221 Ga0154015_1223862
222 Ga0207680_10000176
223 Ga0207645_10002793
224 Ga0207695_10004961
225 Ga0207671_10000072
226 Ga0207662_10010240
227 Ga0207652_10018099
228 Ga0207652_10034120
229 Ga0207694_10071322
230 Ga0207650_10067108
231 Ga0207670_10000006
232 Ga0207670_10014360
233 Ga0207669_10001360
234 Ga0207691_10012029
235 Ga0207667_10000358
236 Ga0207712_10050683
237 Ga0207703_10082782
238 Ga0207639_10005037
239 Ga0207708_10001470
240 Ga0207702_10029882
241 Ga0207674_10075358
242 Ga0207675_100005929
243 Ga0207428_10006648
244 Ga0268264_10106502
245 Ga0265318_10000001
246 Ga0265338_10004317
247 Ga0265338_10025749
248 Ga0311004_101919
249 Ga0265330_10000023
250 Ga0265332_10000122
251 Ga0265320_10000007
252 Ga0265320_10013799
253 Ga0265329_10019772
254 Ga0265339_10014869
255 Ga0265331_10000001
256 Ga0265331_10000660
257 Ga0265327_10000983
258 Ga0265313_10000018
259 Ga0310113_101650
260 Ga0316575_10004063
261 Ga0265314_10000006
262 Ga0265314_10003512
263 Ga0265342_10000197
264 Ga0265342_10004726
265 Ga0307405_10003157
266 Ga0307518_10020253
267 Ga0307410_10016862
268 Ga0307415_100041417
269 Ga0316583_10009085
270 Ga0316593_10013204
271 Ga0316593_10019528
272 Ga0316593_10029845
273 Ga0316592_1008005
274 Ga0316586_1002355
275 Ga0316586_1002507
276 Ga0316587_1003939
277 Ga0316596_1006057
278 Ga0316596_1011100
279 Ga0373951_0004960
280 Ga0373955_0056106
281 Ga0316574_0008210
282 Ga0373933_0000529
283 Ga0373937_0029832
284 Ga0265778_000395
285 Ga0316584_0018343
286 Ga0395899_0003503
287 Ga0395900_0181263
288 Ga0400490_52136
289 Ga0400485_03454
290 Ga0400483_023310
291 Ga0400483_046826
292 Ga0400487_24528
293 Ga0400487_29372
294 Ga0436365_0238529
295 Ga0436360_0973918
296 Ga0466974_0098009
297 Ga0453684_0010923
298 Ga0453684_0304187
299 Ga0451576_0002260
300 Ga0451576_0057703
301 Ga0495592_0000583
302 Ga0495629_0052244
303 Ga0495628_0014012
304 Ga0495640_0019751
305 Ga0495586_0005033
306 Ga0495621_0000035
307 Ga0495634_0003157
308 Ga0495625_0000909
309 Ga0495658_0004819
310 Ga0495613_0042027
311 Ga0495674_0003749
312 Ga0495680_0001327
313 Ga0496107_0015234
314 Ga0496108_0059185
315 Ga0496109_0081449
316 Ga0496114_0000372
317 Ga0496116_0030918
318 Ga0496117_0000706
319 Ga0496122_0014705
320 Ga0496123_0070414
321 Ga0496125_0041036
322 Ga0496126_0018393
323 Ga0501067_0018337
324 Ga0501067_0018720
325 nmdc:mga05p37_16276_c1
326 nmdc:mga0qj67_44762_c1
327 nmdc:mga08y16_24263_c1
328 nmdc:mga08y16_5700_c1
329 nmdc:mga0n895_225677_c1
330 nmdc:mga0a205_57191_c1
331 Ga0500616_0009743
332 Ga0500622_0043032
333 2508850271
334 2547372971
335 2656280098
336 2689442729
337 2843693474
338 2846034092
339 2891674073
340 2908671701

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00118

Cpn60_TCP1

TCP-1/cpn60 chaperonin family

34

551

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
8g7m-assembly1.cif.gz_G atp-bound mthsp60 v72i focus 0.9687 2 515
8g7m-assembly1.cif.gz_G atp-bound mthsp60 v72i focus 0.966 2 515
1dkd-assembly1.cif.gz_A crystal structure of a groel (apical domain) and a dodecameric peptide complex 0.9392 191 335
1srv-assembly1.cif.gz_A thermus thermophilus groel (hsp60 class) fragment (apical domain) comprising residues 192-336 0.9322 194 334
1dkd-assembly1.cif.gz_A crystal structure of a groel (apical domain) and a dodecameric peptide complex 0.9282 191 335
ID Description Score Start End Superfamily
af_A0A1X7YIG0_32_195_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9979 3 165 1.10.560.10
af_P0A6F5_19_130_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9964 20 129 1.10.560.10
af_Q4D6Q2_17_123_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9963 7 112 1.10.560.10
af_P21240_57_183_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9931 11 121 1.10.560.10
af_Q8L7B5_35_159_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.993 5 125 1.10.560.10
ID Description Score Start End GO Terms
AF-W1VFH2-F1-model_v4 deleted 0.9992 3 114
AF-A0A2K5K024-F1-model_v4 Uncharacterized protein 0.9986 3 125 GO:0005524
GO:0042026
GO:0140662
AF-Q5UES3-F1-model_v4 Heat shock 60 kDa protein 1 0.9985 15 128 GO:0005524
GO:0005832
GO:0042026
GO:0140662
AF-A0A836REN4-F1-model_v4 Molecular chaperone GroEL 0.9984 3 121 GO:0005524
GO:0042026
GO:0140662
AF-A0A7S1H1V5-F1-model_v4 Molecular chaperone GroEL 0.9982 3 140 GO:0005524
GO:0042026
GO:0140662

Map