F250508

General Info

Members Datasets Scaffolds Average Seq Length
167 118 334 98

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_12718830|Ga0157374_127188302
Length 104
Sequence LAEITWTSESEIWLEDIYNYIAVDDPHAAARTLSKIYEKTQLLKDHPRLGYRYESEQSREVRILLYGHYRITYVIKAGGDIDILGVFHGALDLDRYVINQSSLR

Samples

Sample ID Description Type Environment
1 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
57 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
83 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
84 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
87 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
88 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
89 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
90 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
91 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
92 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
95 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
98 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
99 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
100 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
107 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
108 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
110 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
111 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
112 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
113 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
114 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
117 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
118 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.6
Nodule 0
Rhizoplane 0.6
Rhizosphere 98.2
Stem 0
Stem Tuber 0
Unclassified 46.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157374_12718830 3300013296 Unclassified 523
2 Ga0065715_10980125 3300005293 Unclassified 551
3 Ga0065707_10004877 3300005295 Bacteria 3636
4 Ga0065707_10149506 3300005295 Bacteria 1674
5 Ga0065707_10731814 3300005295 Bacteria 626
6 Ga0065707_10965467 3300005295 Unclassified 548
7 Ga0070658_10027285 3300005327 Bacteria 4584
8 Ga0070682_100000521 3300005337 Bacteria 24093
9 Ga0070692_10087234 3300005345 Unclassified 1690
10 Ga0070669_100546467 3300005353 Bacteria 965
11 Ga0070675_101157258 3300005354 Unclassified 712
12 Ga0070667_100044790 3300005367 Bacteria 3717
13 Ga0070705_100124899 3300005440 Bacteria 1668
14 Ga0070705_100390322 3300005440 Bacteria 1027
15 Ga0070705_100617078 3300005440 Bacteria 841
16 Ga0070694_100809721 3300005444 Bacteria 768
17 Ga0070694_101250707 3300005444 Unclassified 623
18 Ga0070708_100396403 3300005445 Bacteria 1301
19 Ga0068867_102322747 3300005459 Unclassified 510
20 Ga0070706_100000146 3300005467 Bacteria 89818
21 Ga0070707_100144249 3300005468 Bacteria 2317
22 Ga0070707_100250772 3300005468 Bacteria 1723
23 Ga0070698_100331101 3300005471 Bacteria 1454
24 Ga0070698_100427514 3300005471 Bacteria 1259
25 Ga0070699_100149595 3300005518 Unclassified 2064
26 Ga0070699_100755787 3300005518 Bacteria 889
27 Ga0070699_101598379 3300005518 Unclassified 597
28 Ga0070699_101728605 3300005518 Unclassified 573
29 Ga0070699_101947731 3300005518 Bacteria 537
30 Ga0068853_100055176 3300005539 Bacteria 3425
31 Ga0070686_100012736 3300005544 Unclassified 4800
32 Ga0070696_100049468 3300005546 Bacteria 2920
33 Ga0070696_100710190 3300005546 Unclassified 820
34 Ga0070693_100004553 3300005547 Bacteria 6574
35 Ga0070693_101211349 3300005547 Unclassified 580
36 Ga0070665_100256610 3300005548 Bacteria 1749
37 Ga0070704_100572863 3300005549 Bacteria 989
38 Ga0070704_102124392 3300005549 Unclassified 522
39 Ga0070664_100356174 3300005564 Bacteria 1332
40 Ga0068857_100116709 3300005577 Bacteria 2401
41 Ga0068857_100599554 3300005577 Bacteria 1041
42 Ga0068859_101056091 3300005617 Bacteria 893
43 Ga0068864_100102936 3300005618 Bacteria 2535
44 Ga0068864_100143561 3300005618 Bacteria 2155
45 Ga0068864_100704469 3300005618 Bacteria 987
46 Ga0068864_101926561 3300005618 Unclassified 597
47 Ga0068864_102012795 3300005618 Unclassified 584
48 Ga0068861_101130623 3300005719 Unclassified 754
49 Ga0068863_100695216 3300005841 Bacteria 1010
50 Ga0068863_101424648 3300005841 Unclassified 701
51 Ga0081539_10130839 3300005985 Bacteria 1233
52 Ga0081539_10308590 3300005985 Bacteria 677
53 Ga0075367_10768555 3300006178 Bacteria 613
54 Ga0075428_102161715 3300006844 Unclassified 575
55 Ga0075430_101201502 3300006846 Bacteria 624
56 Ga0075433_10023661 3300006852 Bacteria 5173
57 Ga0075433_10884475 3300006852 Bacteria 779
58 Ga0075434_100280926 3300006871 Bacteria 1684
59 Ga0068865_100817405 3300006881 Bacteria 805
60 Ga0068865_101204746 3300006881 Unclassified 670
61 Ga0068865_101871552 3300006881 Unclassified 543
62 Ga0075436_100278833 3300006914 Unclassified 1195
63 Ga0097620_101056203 3300006931 Bacteria 893
64 Ga0099794_10162050 3300007265 Unclassified 1138
65 Ga0099794_10429238 3300007265 Unclassified 692
66 Ga0105240_10003955 3300009093 Bacteria 22885
67 Ga0105240_10103825 3300009093 Plasmid 3452
68 Ga0111539_10791346 3300009094 Bacteria 1104
69 Ga0114129_13076490 3300009147 Unclassified 546
70 Ga0105243_10377564 3300009148 Unclassified 1310
71 Ga0105243_10474262 3300009148 Unclassified 1179
72 Ga0105243_11459785 3300009148 Unclassified 706
73 Ga0105241_10094428 3300009174 Bacteria 2365
74 Ga0105241_10563161 3300009174 Bacteria 1025
75 Ga0105241_11501070 3300009174 Unclassified 649
76 Ga0105242_10067638 3300009176 Unclassified 2954
77 Ga0105248_10006777 3300009177 Bacteria 12562
78 Ga0105248_10217620 3300009177 Unclassified 2151
79 Ga0105238_10729690 3300009551 Bacteria 1004
80 Ga0105249_13594025 3300009553 Unclassified 500
81 Ga0157378_10224767 3300013297 Bacteria 1786
82 Ga0157378_12566409 3300013297 Unclassified 562
83 Ga0163162_10395842 3300013306 Unclassified 1514
84 Ga0157375_11973524 3300013308 Bacteria 693
85 Ga0163163_10167789 3300014325 Unclassified 2241
86 Ga0163163_11517776 3300014325 Unclassified 731
87 Ga0157380_10230834 3300014326 Unclassified 1662
88 Ga0157377_10576492 3300014745 Unclassified 799
89 Ga0157379_11783757 3300014968 Unclassified 604
90 Ga0182007_10102065 3300015262 Unclassified 950
91 Ga0207697_10337013 3300025315 Bacteria 670
92 Ga0207705_10217457 3300025909 Bacteria 1450
93 Ga0207684_10000327 3300025910 Bacteria 67005
94 Ga0207654_10613668 3300025911 Bacteria 777
95 Ga0207654_11026156 3300025911 Unclassified 600
96 Ga0207695_10032686 3300025913 Bacteria 5689
97 Ga0207695_10043631 3300025913 Unclassified 4779
98 Ga0207671_10022297 3300025914 Unclassified 4789
99 Ga0207646_10235035 3300025922 Unclassified 1656
100 Ga0207646_10361469 3300025922 Unclassified 1311
101 Ga0207646_10794526 3300025922 Bacteria 843
102 Ga0207659_11018071 3300025926 Unclassified 713
103 Ga0207686_10278583 3300025934 Unclassified 1233
104 Ga0207709_10424236 3300025935 Unclassified 1022
105 Ga0207665_10385364 3300025939 Unclassified 1065
106 Ga0207711_10177421 3300025941 Bacteria 1936
107 Ga0207679_10558147 3300025945 Bacteria 1028
108 Ga0207712_10945363 3300025961 Unclassified 763
109 Ga0207658_10042488 3300025986 Bacteria 3298
110 Ga0207639_10044644 3300026041 Bacteria 3334
111 Ga0207641_10781203 3300026088 Unclassified 944
112 Ga0207641_11023140 3300026088 Unclassified 823
113 Ga0207648_10150716 3300026089 Bacteria 2052
114 Ga0207648_12081492 3300026089 Unclassified 529
115 Ga0207676_10351004 3300026095 Bacteria 1364
116 Ga0207676_11521674 3300026095 Unclassified 666
117 Ga0207674_10529151 3300026116 Bacteria 1139
118 Ga0207683_10597866 3300026121 Bacteria 1021
119 Ga0207698_12500182 3300026142 Unclassified 527
120 Ga0210000_1058786 3300027462 Bacteria 621
121 Ga0209971_1108133 3300027682 Unclassified 682
122 Ga0268266_10211815 3300028379 Bacteria 1777
123 Ga0265336_10043748 3300028666 Bacteria 1364
124 Ga0316575_10141940 3300031665 Unclassified 988
125 Ga0316577_10870716 3300031733 Unclassified 511
126 Ga0307416_102972045 3300032002 Unclassified 567
127 Ga0373959_0166270 3300034820 Unclassified 566
128 Ga0373940_0220450 3300035088 Unclassified 630
129 Ga0373951_0008019 3300035091 Bacteria 2393
130 Ga0373941_0013548 3300035115 Bacteria 2158
131 Ga0373942_0165968 3300035207 Bacteria 716
132 Ga0373942_0349847 3300035207 Unclassified 522
133 Ga0373962_0217261 3300035242 Unclassified 653
134 Ga0316574_0213251 3300035398 Unclassified 1238
135 Ga0316574_0323233 3300035398 Unclassified 979
136 Ga0316574_0352419 3300035398 Bacteria 931
137 Ga0373937_0140401 3300036401 Bacteria 2260
138 Ga0316582_0253962 3300036647 Unclassified 1205
139 Ga0316584_0492841 3300036712 Unclassified 862
140 Ga0316584_0915592 3300036712 Bacteria 590
141 Ga0395901_0578276 3300038443 Unclassified 1135
142 Ga0400483_147778 3300039062 Bacteria 1221
143 Ga0439441_014759 3300042001 Bacteria 1374
144 Ga0453683_0751839 3300044673 Unclassified 640
145 Ga0466964_0291955 3300044706 Unclassified 819
146 Ga0453684_0098699 3300044712 Bacteria 3579
147 Ga0453684_0362287 3300044712 Bacteria 1632
148 Ga0453684_0362984 3300044712 Bacteria 1630
149 Ga0451576_0753594 3300045051 Bacteria 1023
150 Ga0495621_0000180 3300046539 Bacteria 14434
151 Ga0495621_0038481 3300046539 Unclassified 1669
152 Ga0495613_0638162 3300046689 Unclassified 706
153 Ga0496108_0358150 3300048911 Bacteria 1273
154 Ga0501291_031819 3300049514 Unclassified 893
155 Ga0501292_051382 3300049515 Unclassified 731
156 Ga0501042_0011343 3300049578 Bacteria 6010
157 Ga0501067_0029101 3300049583 Bacteria 3061
158 Ga0501076_0127740 3300049592 Bacteria 2061
159 Ga0501207_055699 3300049654 Bacteria 715
160 Ga0501225_0083345 3300049705 Unclassified 920
161 Ga0501234_081805 3300049707 Unclassified 570
162 nmdc:mga0qj67_892876_c1 3300050509 Bacteria 700
163 nmdc:mga08y16_707141_c1 3300050511 Bacteria 1007
164 nmdc:mga0n895_41012_c1 3300050512 Bacteria 4499
165 nmdc:mga08x19_1282408_c1 3300050514 Bacteria 519
166 nmdc:mga08x19_963478_c1 3300050514 Unclassified 606
167 nmdc:mga0a205_18846_c1 3300050515 Bacteria 6497
168 Ga0157374_12718830
169 Ga0065715_10980125
170 Ga0065707_10004877
171 Ga0065707_10149506
172 Ga0065707_10731814
173 Ga0065707_10965467
174 Ga0070658_10027285
175 Ga0070682_100000521
176 Ga0070692_10087234
177 Ga0070669_100546467
178 Ga0070675_101157258
179 Ga0070667_100044790
180 Ga0070705_100124899
181 Ga0070705_100390322
182 Ga0070705_100617078
183 Ga0070694_100809721
184 Ga0070694_101250707
185 Ga0070708_100396403
186 Ga0068867_102322747
187 Ga0070706_100000146
188 Ga0070707_100144249
189 Ga0070707_100250772
190 Ga0070698_100331101
191 Ga0070698_100427514
192 Ga0070699_100149595
193 Ga0070699_100755787
194 Ga0070699_101598379
195 Ga0070699_101728605
196 Ga0070699_101947731
197 Ga0068853_100055176
198 Ga0070686_100012736
199 Ga0070696_100049468
200 Ga0070696_100710190
201 Ga0070693_100004553
202 Ga0070693_101211349
203 Ga0070665_100256610
204 Ga0070704_100572863
205 Ga0070704_102124392
206 Ga0070664_100356174
207 Ga0068857_100116709
208 Ga0068857_100599554
209 Ga0068859_101056091
210 Ga0068864_100102936
211 Ga0068864_100143561
212 Ga0068864_100704469
213 Ga0068864_101926561
214 Ga0068864_102012795
215 Ga0068861_101130623
216 Ga0068863_100695216
217 Ga0068863_101424648
218 Ga0081539_10130839
219 Ga0081539_10308590
220 Ga0075367_10768555
221 Ga0075428_102161715
222 Ga0075430_101201502
223 Ga0075433_10023661
224 Ga0075433_10884475
225 Ga0075434_100280926
226 Ga0068865_100817405
227 Ga0068865_101204746
228 Ga0068865_101871552
229 Ga0075436_100278833
230 Ga0097620_101056203
231 Ga0099794_10162050
232 Ga0099794_10429238
233 Ga0105240_10003955
234 Ga0105240_10103825
235 Ga0111539_10791346
236 Ga0114129_13076490
237 Ga0105243_10377564
238 Ga0105243_10474262
239 Ga0105243_11459785
240 Ga0105241_10094428
241 Ga0105241_10563161
242 Ga0105241_11501070
243 Ga0105242_10067638
244 Ga0105248_10006777
245 Ga0105248_10217620
246 Ga0105238_10729690
247 Ga0105249_13594025
248 Ga0157378_10224767
249 Ga0157378_12566409
250 Ga0163162_10395842
251 Ga0157375_11973524
252 Ga0163163_10167789
253 Ga0163163_11517776
254 Ga0157380_10230834
255 Ga0157377_10576492
256 Ga0157379_11783757
257 Ga0182007_10102065
258 Ga0207697_10337013
259 Ga0207705_10217457
260 Ga0207684_10000327
261 Ga0207654_10613668
262 Ga0207654_11026156
263 Ga0207695_10032686
264 Ga0207695_10043631
265 Ga0207671_10022297
266 Ga0207646_10235035
267 Ga0207646_10361469
268 Ga0207646_10794526
269 Ga0207659_11018071
270 Ga0207686_10278583
271 Ga0207709_10424236
272 Ga0207665_10385364
273 Ga0207711_10177421
274 Ga0207679_10558147
275 Ga0207712_10945363
276 Ga0207658_10042488
277 Ga0207639_10044644
278 Ga0207641_10781203
279 Ga0207641_11023140
280 Ga0207648_10150716
281 Ga0207648_12081492
282 Ga0207676_10351004
283 Ga0207676_11521674
284 Ga0207674_10529151
285 Ga0207683_10597866
286 Ga0207698_12500182
287 Ga0210000_1058786
288 Ga0209971_1108133
289 Ga0268266_10211815
290 Ga0265336_10043748
291 Ga0316575_10141940
292 Ga0316577_10870716
293 Ga0307416_102972045
294 Ga0373959_0166270
295 Ga0373940_0220450
296 Ga0373951_0008019
297 Ga0373941_0013548
298 Ga0373942_0165968
299 Ga0373942_0349847
300 Ga0373962_0217261
301 Ga0316574_0213251
302 Ga0316574_0323233
303 Ga0316574_0352419
304 Ga0373937_0140401
305 Ga0316582_0253962
306 Ga0316584_0492841
307 Ga0316584_0915592
308 Ga0395901_0578276
309 Ga0400483_147778
310 Ga0439441_014759
311 Ga0453683_0751839
312 Ga0466964_0291955
313 Ga0453684_0098699
314 Ga0453684_0362287
315 Ga0453684_0362984
316 Ga0451576_0753594
317 Ga0495621_0000180
318 Ga0495621_0038481
319 Ga0495613_0638162
320 Ga0496108_0358150
321 Ga0501291_031819
322 Ga0501292_051382
323 Ga0501042_0011343
324 Ga0501067_0029101
325 Ga0501076_0127740
326 Ga0501207_055699
327 Ga0501225_0083345
328 Ga0501234_081805
329 nmdc:mga0qj67_892876_c1
330 nmdc:mga08y16_707141_c1
331 nmdc:mga0n895_41012_c1
332 nmdc:mga08x19_1282408_c1
333 nmdc:mga08x19_963478_c1
334 nmdc:mga0a205_18846_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05016

ParE_toxin

ParE toxin of type II toxin-antitoxin system, parDE

4

93

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ycu-assembly1.cif.gz_C-2 heterotetramer of antitoxin prpa together with toxin prpt from pseudoalteromonas rubra 0.9126 1 90
6x0a-assembly17.cif.gz_Q x-ray structure of a chimeric parde toxin-antitoxin complex from mesorhizobium opportunistum 0.8927 3 93
5ceg-assembly1.cif.gz_B x-ray structure of toxin/anti-toxin complex from mesorhizobium opportunistum 0.8793 2 93
6x0a-assembly17.cif.gz_Q x-ray structure of a chimeric parde toxin-antitoxin complex from mesorhizobium opportunistum 0.8653 3 93
8c24-assembly1.cif.gz_B parde1 toxin-antitoxin complex from mycobacterium tuberculosis (rv1960c-rv1959c) 0.862 3 93
ID Description Score Start End Superfamily
af_P9WHG7_1_98_3.30.2310.20 Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like 0.8956 2 92 3.30.2310.20
5cegD00 Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like 0.8738 2 94 3.30.2310.20
af_A0A0R0IEG5_989_1043_2.40.50.40 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.8542 60 88 2.40.50.40
5cw7F00 Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like 0.8427 2 99 3.30.2310.20
3kxeB00 Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like 0.8286 3 99 3.30.2310.20
ID Description Score Start End GO Terms
AF-A0A081C7I0-F1-model_v4 Plasmid stabilization system 0.9964 1 92
AF-A0A3E0NCE4-F1-model_v4 Type II toxin-antitoxin system RelE/ParE family toxin 0.9946 1 93
AF-A0A661YBH7-F1-model_v4 deleted 0.9904 1 92
AF-A0A518IYH7-F1-model_v4 Plasmid stabilization system protein 0.9882 35 93
AF-A0A5C6B0W7-F1-model_v4 Plasmid stabilization system protein 0.9868 1 93

Map