F247523

General Info

Members Datasets Scaffolds Average Seq Length
166 118 159 356

Family's Representative Sequence

Representative Sequence 3300005288|Ga0065714_10002189|Ga0065714_1000218968
Length 393
Sequence MTRGKTSAANGNGHRKHVSAITSTPTHKNGKSKPILITGGAGFVGSNLAHRLLSAGHRVRLLDNLSRIGVERNLRWLIEAHGDLVDIDVPDVRNFSVVKQAVKDASQVFHFAAQVAVTSSLVDPREDFEINAGGTLNLLEAIRTTENPPPLIFTSTNKVYGNLADVDFTKLPTRYAPVDASIRERGIAETRPLDFHSPYGCSKGAADQYVVDYARTFGIPALVFRMSCIYGPHQHGNEDQGWVAHFVIQSITGQPITIYGDGRQVRDILFIDDLVDAFLLAQQHMKKLSGNAFNIGGGPANTISLLELLDLLGELQGGDVSICFEDWRAADQRYYVTDTSKFSGLTGWQPRVGVTEGVGRLYEWLLNERAHCTGEPVGVTQFASASRMKAAKA

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
3 2842694124 Methylopila sp. R-72369 Isolate Unclassified
4 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
5 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
6 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
42 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
43 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
72 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
80 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
81 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
82 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
85 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
86 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
87 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
88 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
89 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
90 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
94 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
95 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
96 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
97 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
102 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
106 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
107 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
108 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
109 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
110 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
111 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
112 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
113 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
114 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
115 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
116 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
117 641522639 Methylobacterium sp. 4-46 Isolate Nodule
118 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.58
Metatranscriptomes 1.2
Isolates 4.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.6
Nodule 1.2
Rhizoplane 1.81
Rhizosphere 92.17
Stem 0
Stem Tuber 0
Unclassified 4.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_93379 2162886011 Bacteria 2854
2 Ga0065714_10002189 3300005288 Bacteria 128055
3 Ga0065712_10067733 3300005290 Bacteria 118568
4 Ga0065715_10097745 3300005293 Bacteria 3658
5 Ga0070658_10012798 3300005327 Bacteria 6731
6 Ga0070683_100006091 3300005329 Bacteria 10113
7 Ga0070683_100030751 3300005329 Bacteria 4878
8 Ga0070680_100034855 3300005336 Bacteria 4060
9 Ga0070680_100049403 3300005336 Bacteria 3429
10 Ga0070682_100004321 3300005337 Bacteria 7891
11 Ga0070660_100068699 3300005339 Bacteria 2762
12 Ga0070660_100150369 3300005339 Bacteria 1872
13 Ga0070691_10001004 3300005341 Bacteria 11565
14 Ga0070668_100003415 3300005347 Bacteria 11723
15 Ga0070667_100030440 3300005367 Bacteria 4502
16 Ga0070681_10027777 3300005458 Bacteria 5689
17 Ga0070681_10086474 3300005458 Unclassified 3088
18 Ga0070679_100012353 3300005530 Bacteria 8157
19 Ga0070684_100010132 3300005535 Bacteria 7453
20 Ga0068853_100129289 3300005539 Bacteria 2259
21 Ga0070665_100000476 3300005548 Bacteria 57814
22 Ga0068855_100001203 3300005563 Bacteria 32173
23 Ga0068855_100138685 3300005563 Bacteria 2774
24 Ga0070664_100097068 3300005564 Bacteria 2558
25 Ga0068857_100014546 3300005577 Bacteria 6864
26 Ga0068857_100065449 3300005577 Bacteria 3232
27 Ga0068856_100086562 3300005614 Bacteria 3114
28 Ga0068852_100472487 3300005616 Bacteria 1245
29 Ga0068864_100000632 3300005618 Bacteria 29500
30 Ga0068863_100000125 3300005841 Bacteria 80636
31 Ga0068858_100000025 3300005842 Bacteria 160546
32 Ga0081539_10086890 3300005985 Bacteria 1626
33 Ga0105240_10031943 3300009093 Bacteria 6820
34 Ga0105240_10037595 3300009093 Bacteria 6219
35 Ga0105248_10103264 3300009177 Bacteria 3213
36 Ga0105238_10007628 3300009551 Bacteria 10839
37 Ga0157370_10027189 3300013104 Bacteria 5641
38 Ga0157370_10137012 3300013104 Bacteria 2281
39 Ga0157369_10000207 3300013105 Bacteria 81678
40 Ga0157369_10075285 3300013105 Bacteria 3620
41 Ga0157372_10063529 3300013307 Bacteria 4140
42 Ga0157375_10007599 3300013308 Bacteria 9482
43 Ga0163163_10006147 3300014325 Bacteria 10463
44 Ga0163163_10068487 3300014325 Bacteria 3532
45 Ga0163163_10073198 3300014325 Bacteria 3417
46 Ga0206356_11687952 3300020070 Bacteria 2444
47 Ga0213875_10014642 3300021388 Bacteria 3825
48 Ga0213871_10017156 3300021441 Bacteria 1756
49 Ga0224712_10065229 3300022467 Bacteria 1463
50 Ga0207656_10026062 3300025321 Bacteria 2379
51 Ga0207647_10001932 3300025904 Bacteria 15842
52 Ga0207705_10093926 3300025909 Bacteria 2199
53 Ga0207695_10022435 3300025913 Bacteria 7163
54 Ga0207660_10033130 3300025917 Bacteria 3571
55 Ga0207657_10013363 3300025919 Bacteria 8055
56 Ga0207652_10052508 3300025921 Bacteria 3499
57 Ga0207694_10007472 3300025924 Bacteria 8284
58 Ga0207690_10043161 3300025932 Bacteria 2966
59 Ga0207711_10032256 3300025941 Bacteria 4429
60 Ga0207661_10008664 3300025944 Bacteria 7270
61 Ga0207661_10012909 3300025944 Bacteria 6091
62 Ga0207679_10041453 3300025945 Bacteria 3301
63 Ga0207667_10001337 3300025949 Bacteria 30925
64 Ga0207667_10017791 3300025949 Bacteria 7992
65 Ga0207668_10000087 3300025972 Bacteria 69565
66 Ga0207658_10047698 3300025986 Bacteria 3136
67 Ga0207703_10000105 3300026035 Bacteria 99702
68 Ga0207641_10000012 3300026088 Bacteria 375486
69 Ga0207676_10000315 3300026095 Bacteria 41410
70 Ga0207676_10052514 3300026095 Bacteria 3187
71 Ga0207674_10014746 3300026116 Bacteria 8622
72 Ga0207698_10121199 3300026142 Bacteria 2214
73 Ga0268266_10003116 3300028379 Bacteria 16874
74 Ga0307405_10018570 3300031731 Bacteria 3840
75 Ga0307410_10088646 3300031852 Bacteria 2191
76 Ga0307406_10040485 3300031901 Bacteria 2898
77 Ga0307409_100006041 3300031995 Bacteria 7066
78 Ga0307409_100097941 3300031995 Bacteria 2424
79 Ga0307409_100419187 3300031995 Bacteria 1284
80 Ga0307416_100182721 3300032002 Bacteria 1967
81 Ga0307414_10085960 3300032004 Bacteria 2319
82 Ga0307414_10089132 3300032004 Bacteria 2285
83 Ga0307414_10092254 3300032004 Bacteria 2254
84 Ga0307414_10117942 3300032004 Bacteria 2035
85 Ga0307415_100055948 3300032126 Bacteria 2702
86 Ga0373937_0000598 3300036401 Bacteria 31950
87 Ga0395899_0014032 3300037312 Bacteria 6117
88 Ga0395899_0018177 3300037312 Bacteria 5348
89 Ga0395900_0001367 3300037418 Bacteria 29340
90 Ga0395900_0038006 3300037418 Bacteria 4963
91 Ga0395900_0048795 3300037418 Bacteria 4360
92 Ga0395900_0176136 3300037418 Bacteria 2175
93 Ga0395898_0029947 3300037466 Bacteria 5449
94 Ga0395898_0035584 3300037466 Bacteria 4949
95 Ga0395898_0062121 3300037466 Bacteria 3628
96 Ga0395898_0078575 3300037466 Bacteria 3183
97 Ga0395905_0001138 3300037471 Bacteria 33269
98 Ga0395905_0394994 3300037471 Bacteria 1277
99 Ga0436364_0343587 3300037853 Bacteria 58472
100 Ga0436364_0498355 3300037853 Bacteria 7611
101 Ga0395901_0045606 3300038443 Bacteria 4550
102 Ga0395901_0129099 3300038443 Bacteria 2657
103 Ga0395901_0273771 3300038443 Bacteria 1755
104 Ga0436360_1160772 3300039438 Bacteria 2756
105 Ga0436361_0453834 3300039447 Bacteria 16680
106 Ga0439431_0002979 3300041997 Bacteria 3718
107 Ga0466969_0015642 3300044656 Bacteria 3975
108 Ga0466969_0023391 3300044656 Bacteria 3185
109 Ga0466972_0035913 3300044658 Bacteria 2426
110 Ga0466966_0009235 3300044684 Bacteria 6529
111 Ga0466961_0028213 3300044693 Bacteria 3608
112 Ga0466963_0028671 3300044694 Bacteria 3577
113 Ga0466963_0054734 3300044694 Bacteria 2652
114 Ga0466964_0005698 3300044706 Bacteria 4634
115 Ga0466964_0011828 3300044706 Bacteria 3299
116 Ga0466964_0067296 3300044706 Bacteria 1505
117 Ga0466971_0015123 3300044719 Bacteria 3394
118 Ga0466971_0073111 3300044719 Bacteria 1558
119 Ga0466971_0111615 3300044719 Bacteria 1262
120 Ga0466968_0012540 3300044735 Bacteria 3320
121 Ga0466970_0013267 3300044765 Bacteria 4224
122 Ga0466970_0014976 3300044765 Bacteria 3987
123 Ga0466970_0061119 3300044765 Bacteria 2018
124 Ga0466970_0116955 3300044765 Bacteria 1458
125 Ga0466957_0034393 3300044842 Bacteria 3040
126 Ga0466959_0017995 3300045049 Bacteria 5185
127 Ga0466959_0038063 3300045049 Bacteria 3554
128 Ga0466958_0004287 3300045836 Bacteria 7512
129 Ga0466958_0005929 3300045836 Bacteria 6605
130 Ga0466958_0037708 3300045836 Bacteria 2896
131 Ga0466967_0015839 3300045976 Bacteria 5925
132 Ga0466967_0017492 3300045976 Bacteria 5695
133 Ga0466967_0026309 3300045976 Bacteria 4817
134 Ga0466967_0041503 3300045976 Bacteria 3967
135 Ga0466967_0075158 3300045976 Bacteria 3036
136 Ga0466967_0162990 3300045976 Bacteria 2094
137 Ga0495610_0050467 3300046512 Bacteria 2031
138 Ga0495668_0005830 3300046616 Bacteria 8230
139 Ga0495670_0143921 3300046691 Bacteria 1248
140 Ga0496105_0005991 3300048908 Bacteria 9282
141 Ga0496108_0002680 3300048911 Bacteria 14261
142 Ga0496109_0002643 3300048912 Bacteria 15023
143 Ga0501292_005884 3300049515 Bacteria 1726
144 Ga0501298_002996 3300049521 Bacteria 2598
145 Ga0501034_0098937 3300049571 Bacteria 2912
146 Ga0501047_0037230 3300049581 Bacteria 4704
147 Ga0501217_003599 3300049661 Unclassified 3138
148 Ga0501223_003859 3300049663 Unclassified 3238
149 Ga0501227_003147 3300049665 Bacteria 3587
150 Ga0501243_000028 3300049675 Bacteria 12806
151 Ga0501249_011829 3300049679 Bacteria 1838
152 Ga0501257_001194 3300049686 Bacteria 5327
153 Ga0501257_027914 3300049686 Bacteria 1352
154 Ga0501221_002061 3300049704 Bacteria 3348
155 Ga0501283_013374 3300049779 Bacteria 1243
156 Ga0501212_001957 3300049851 Bacteria 2419
157 Ga0501226_001910 3300049853 Viruses 2608
158 Ga0500556_0000207 3300053104 Bacteria 48431
159 Ga0466962_0011933 3300061719 Bacteria 4180

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_0176136 Ga0395900_0176136_17_928 303
2 3300046691 Ga0495670_0143921 Ga0495670_0143921_201_1181 326
3 3300005618 Ga0068864_100000632 Ga0068864_10000063227 327
4 3300005841 Ga0068863_100000125 Ga0068863_10000012512 327
5 3300005842 Ga0068858_100000025 Ga0068858_10000002570 327
6 3300026035 Ga0207703_10000105 Ga0207703_1000010553 327
7 3300026088 Ga0207641_10000012 Ga0207641_10000012319 327
8 3300026095 Ga0207676_10000315 Ga0207676_100003154 327
9 3300014325 Ga0163163_10073198 Ga0163163_100731982 330
10 3300049686 Ga0501257_027914 Ga0501257_027914_13_1011 332
11 3300005336 Ga0070680_100049403 Ga0070680_1000494032 338
12 3300005530 Ga0070679_100012353 Ga0070679_1000123537 338
13 3300005563 Ga0068855_100001203 Ga0068855_10000120315 338
14 3300009093 Ga0105240_10037595 Ga0105240_100375953 338
15 3300025913 Ga0207695_10022435 Ga0207695_100224353 338
16 3300025921 Ga0207652_10052508 Ga0207652_100525083 338
17 3300025949 Ga0207667_10001337 Ga0207667_1000133713 338
18 3300005329 Ga0070683_100030751 Ga0070683_1000307514 339
19 3300005577 Ga0068857_100014546 Ga0068857_1000145463 339
20 3300025944 Ga0207661_10008664 Ga0207661_100086645 339
21 3300049515 Ga0501292_005884 Ga0501292_005884_97_1170 339
22 3300049679 Ga0501249_011829 Ga0501249_011829_111_1184 339
23 3300049779 Ga0501283_013374 Ga0501283_013374_154_1227 339
24 3300031852 Ga0307410_10088646 Ga0307410_100886462 343
25 3300037418 Ga0395900_0048795 Ga0395900_0048795_1174_2247 343
26 3300037466 Ga0395898_0062121 Ga0395898_0062121_903_1976 343
27 3300005347 Ga0070668_100003415 Ga0070668_10000341511 344
28 3300005367 Ga0070667_100030440 Ga0070667_1000304402 344
29 3300005548 Ga0070665_100000476 Ga0070665_10000047635 344
30 3300009177 Ga0105248_10103264 Ga0105248_101032642 344
31 3300014325 Ga0163163_10068487 Ga0163163_100684872 344
32 3300025941 Ga0207711_10032256 Ga0207711_100322563 344
33 3300025972 Ga0207668_10000087 Ga0207668_1000008739 344
34 3300025986 Ga0207658_10047698 Ga0207658_100476982 344
35 3300026095 Ga0207676_10052514 Ga0207676_100525143 344
36 3300028379 Ga0268266_10003116 Ga0268266_1000311618 344
37 3300013105 Ga0157369_10000207 Ga0157369_1000020768 345
38 3300032004 Ga0307414_10117942 Ga0307414_101179422 347
39 3300049581 Ga0501047_0037230 Ga0501047_0037230_765_1814 347
40 3300049686 Ga0501257_001194 Ga0501257_001194_90_1139 347
41 iso_pu_bacteria 2857504554 2857507671 348
42 3300021441 Ga0213871_10017156 Ga0213871_100171562 349
43 3300039438 Ga0436360_1160772 Ga0436360_1160772_1661_2713 349
44 iso_pu_bacteria 2842694124 2842697191 349
45 3300005458 Ga0070681_10027777 Ga0070681_100277775 351
46 3300046616 Ga0495668_0005830 Ga0495668_0005830_4356_5414 352
47 3300021388 Ga0213875_10014642 Ga0213875_100146424 353
48 3300037853 Ga0436364_0498355 Ga0436364_0498355_108_1172 353
49 3300005329 Ga0070683_100006091 Ga0070683_1000060914 354
50 3300005336 Ga0070680_100034855 Ga0070680_1000348554 354
51 3300005337 Ga0070682_100004321 Ga0070682_1000043216 354
52 3300005339 Ga0070660_100068699 Ga0070660_1000686992 354
53 3300005341 Ga0070691_10001004 Ga0070691_1000100410 354
54 3300005535 Ga0070684_100010132 Ga0070684_1000101325 354
55 3300005539 Ga0068853_100129289 Ga0068853_1001292892 354
56 3300005564 Ga0070664_100097068 Ga0070664_1000970682 354
57 3300005577 Ga0068857_100065449 Ga0068857_1000654492 354
58 3300013104 Ga0157370_10027189 Ga0157370_100271894 354
59 3300013104 Ga0157370_10137012 Ga0157370_101370122 354
60 3300013307 Ga0157372_10063529 Ga0157372_100635293 354
61 3300025321 Ga0207656_10026062 Ga0207656_100260622 354
62 3300025904 Ga0207647_10001932 Ga0207647_1000193211 354
63 3300025917 Ga0207660_10033130 Ga0207660_100331302 354
64 3300025919 Ga0207657_10013363 Ga0207657_100133638 354
65 3300025932 Ga0207690_10043161 Ga0207690_100431612 354
66 3300025944 Ga0207661_10012909 Ga0207661_100129096 354
67 3300025945 Ga0207679_10041453 Ga0207679_100414533 354
68 3300025949 Ga0207667_10017791 Ga0207667_100177916 354
69 3300026116 Ga0207674_10014746 Ga0207674_100147462 354
70 3300031995 Ga0307409_100097941 Ga0307409_1000979412 354
71 3300037312 Ga0395899_0014032 Ga0395899_0014032_697_1761 354
72 3300037312 Ga0395899_0018177 Ga0395899_0018177_370_1434 354
73 3300037418 Ga0395900_0001367 Ga0395900_0001367_17222_18286 354
74 3300037466 Ga0395898_0029947 Ga0395898_0029947_182_1246 354
75 3300037466 Ga0395898_0035584 Ga0395898_0035584_2754_3818 354
76 3300037471 Ga0395905_0001138 Ga0395905_0001138_15124_16188 354
77 3300038443 Ga0395901_0045606 Ga0395901_0045606_2562_3626 354
78 3300038443 Ga0395901_0273771 Ga0395901_0273771_114_1178 354
79 3300044656 Ga0466969_0015642 Ga0466969_0015642_1847_2911 354
80 3300044656 Ga0466969_0023391 Ga0466969_0023391_1692_2756 354
81 3300044658 Ga0466972_0035913 Ga0466972_0035913_777_1841 354
82 3300044684 Ga0466966_0009235 Ga0466966_0009235_2748_3812 354
83 3300044693 Ga0466961_0028213 Ga0466961_0028213_844_1908 354
84 3300044694 Ga0466963_0028671 Ga0466963_0028671_612_1676 354
85 3300044706 Ga0466964_0005698 Ga0466964_0005698_593_1657 354
86 3300044706 Ga0466964_0067296 Ga0466964_0067296_198_1262 354
87 3300044719 Ga0466971_0015123 Ga0466971_0015123_1937_3001 354
88 3300044719 Ga0466971_0111615 Ga0466971_0111615_172_1236 354
89 3300044735 Ga0466968_0012540 Ga0466968_0012540_64_1128 354
90 3300044765 Ga0466970_0013267 Ga0466970_0013267_1847_2911 354
91 3300044765 Ga0466970_0014976 Ga0466970_0014976_333_1397 354
92 3300044765 Ga0466970_0061119 Ga0466970_0061119_595_1659 354
93 3300044842 Ga0466957_0034393 Ga0466957_0034393_1832_2896 354
94 3300045049 Ga0466959_0017995 Ga0466959_0017995_643_1707 354
95 3300045049 Ga0466959_0038063 Ga0466959_0038063_1515_2579 354
96 3300045836 Ga0466958_0004287 Ga0466958_0004287_2776_3840 354
97 3300045836 Ga0466958_0037708 Ga0466958_0037708_1626_2690 354
98 3300045976 Ga0466967_0026309 Ga0466967_0026309_3480_4544 354
99 3300045976 Ga0466967_0075158 Ga0466967_0075158_1662_2732 354
100 3300061719 Ga0466962_0011933 Ga0466962_0011933_2396_3460 354
101 3300038443 Ga0395901_0129099 Ga0395901_0129099_210_1280 355
102 3300053104 Ga0500556_0000207 Ga0500556_0000207_21587_22654 355
103 iso_pu_bacteria 2883577096 2883579769 355
104 3300005327 Ga0070658_10012798 Ga0070658_100127985 356
105 3300005339 Ga0070660_100150369 Ga0070660_1001503692 356
106 3300005563 Ga0068855_100138685 Ga0068855_1001386852 356
107 3300005614 Ga0068856_100086562 Ga0068856_1000865622 356
108 3300005616 Ga0068852_100472487 Ga0068852_1004724872 356
109 3300025909 Ga0207705_10093926 Ga0207705_100939262 356
110 3300031995 Ga0307409_100419187 Ga0307409_1004191871 356
111 3300037418 Ga0395900_0038006 Ga0395900_0038006_2258_3334 356
112 3300037466 Ga0395898_0078575 Ga0395898_0078575_1180_2256 356
113 3300037471 Ga0395905_0394994 Ga0395905_0394994_143_1219 356
114 3300044694 Ga0466963_0054734 Ga0466963_0054734_287_1363 356
115 3300044706 Ga0466964_0011828 Ga0466964_0011828_1673_2749 356
116 3300044719 Ga0466971_0073111 Ga0466971_0073111_330_1406 356
117 3300044765 Ga0466970_0116955 Ga0466970_0116955_179_1255 356
118 3300045836 Ga0466958_0005929 Ga0466958_0005929_4504_5580 356
119 3300045976 Ga0466967_0015839 Ga0466967_0015839_3078_4154 356
120 3300045976 Ga0466967_0017492 Ga0466967_0017492_2924_4000 356
121 3300045976 Ga0466967_0041503 Ga0466967_0041503_453_1529 356
122 3300045976 Ga0466967_0162990 Ga0466967_0162990_94_1170 356
123 3300049675 Ga0501243_000028 Ga0501243_000028_7784_8881 358
124 iso_pu_bacteria 2929199973 2929206173 358
125 iso_pu_bacteria 8055909800 8055912685 358
126 3300032004 Ga0307414_10085960 Ga0307414_100859602 359
127 3300049571 Ga0501034_0098937 Ga0501034_0098937_455_1534 359
128 iso_pu_bacteria 2545555834 2545673090 359
129 iso_pu_bacteria 641522639 641642306 359
130 3300009551 Ga0105238_10007628 Ga0105238_100076286 360
131 3300013105 Ga0157369_10075285 Ga0157369_100752852 360
132 3300025924 Ga0207694_10007472 Ga0207694_100074724 360
133 3300037853 Ga0436364_0343587 Ga0436364_0343587_31720_32802 360
134 3300032004 Ga0307414_10089132 Ga0307414_100891322 361
135 3300041997 Ga0439431_0002979 Ga0439431_0002979_1776_2894 362
136 3300046512 Ga0495610_0050467 Ga0495610_0050467_317_1423 362
137 3300005458 Ga0070681_10086474 Ga0070681_100864743 363
138 3300020070 Ga0206356_11687952 Ga0206356_116879522 363
139 3300022467 Ga0224712_10065229 Ga0224712_100652292 363
140 3300036401 Ga0373937_0000598 Ga0373937_0000598_9467_10570 363
141 3300026142 Ga0207698_10121199 Ga0207698_101211992 365
142 3300014325 Ga0163163_10006147 Ga0163163_100061472 368
143 3300031731 Ga0307405_10018570 Ga0307405_100185703 368
144 3300031995 Ga0307409_100006041 Ga0307409_1000060412 368
145 3300032126 Ga0307415_100055948 Ga0307415_1000559482 368
146 3300048908 Ga0496105_0005991 Ga0496105_0005991_1517_2653 368
147 3300048911 Ga0496108_0002680 Ga0496108_0002680_7160_8296 368
148 3300048912 Ga0496109_0002643 Ga0496109_0002643_6972_8108 368
149 3300039447 Ga0436361_0453834 Ga0436361_0453834_11588_12700 370
150 3300032002 Ga0307416_100182721 Ga0307416_1001827212 372
151 3300005985 Ga0081539_10086890 Ga0081539_100868902 377
152 3300009093 Ga0105240_10031943 Ga0105240_100319435 378
153 3300049521 Ga0501298_002996 Ga0501298_002996_548_1723 390
154 3300049661 Ga0501217_003599 Ga0501217_003599_1148_2323 390
155 3300049663 Ga0501223_003859 Ga0501223_003859_1722_2897 390
156 3300049665 Ga0501227_003147 Ga0501227_003147_577_1752 390
157 3300049704 Ga0501221_002061 Ga0501221_002061_1607_2782 390
158 3300049851 Ga0501212_001957 Ga0501212_001957_839_2014 390
159 3300013308 Ga0157375_10007599 Ga0157375_100075994 392
160 2162886011 MRS1b_contig_93379 MRS1b_0819.00002770 393
161 3300005288 Ga0065714_10002189 Ga0065714_1000218968 393
162 3300005290 Ga0065712_10067733 Ga0065712_1006773360 393
163 3300005293 Ga0065715_10097745 Ga0065715_100977453 393
164 3300031901 Ga0307406_10040485 Ga0307406_100404853 393
165 3300032004 Ga0307414_10092254 Ga0307414_100922542 393
166 3300049853 Ga0501226_001910 Ga0501226_001910_1319_2503 393

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

35

296

0.88

PF04321

RmlD_sub_bind

RmlD substrate binding domain

33

263

0.85

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

36

361

0.85

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

35

176

0.8

PF07993

NAD_binding_4

Male sterility protein

95

278

0.76

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

36

298

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1orr-assembly1.cif.gz_A crystal structure of cdp-tyvelose 2-epimerase complexed with nad and cdp 0.9459 34 367
1orr-assembly2.cif.gz_D crystal structure of cdp-tyvelose 2-epimerase complexed with nad and cdp 0.9457 34 364
1orr-assembly3.cif.gz_C crystal structure of cdp-tyvelose 2-epimerase complexed with nad and cdp 0.9452 34 364
1orr-assembly1.cif.gz_A crystal structure of cdp-tyvelose 2-epimerase complexed with nad and cdp 0.9323 34 367
1orr-assembly2.cif.gz_D crystal structure of cdp-tyvelose 2-epimerase complexed with nad and cdp 0.9293 34 364
ID Description Score Start End Superfamily
1orrD00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9457 34 364 3.40.50.720
1orrD00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9293 34 364 3.40.50.720
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9044 33 373 3.40.50.720
af_P72050_1_314_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9034 34 376 3.40.50.720
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.899 33 373 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2M8V6M2-F1-model_v4 deleted 0.9816 31 113
AF-A0A7Y4K0Q5-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9777 33 356
AF-A0A2M7MAR7-F1-model_v4 CDP-paratose 2-epimerase 0.9774 256 366 GO:0033320
GO:0048040
AF-A0A2W5QWA5-F1-model_v4 CDP-paratose 2-epimerase 0.9748 33 371
AF-A0A4Y9S2Q0-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9705 33 370

Feature Viewer

pLDDT pTM Quality
83.68 0.84 High
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Predicted Structure (AlphaFold2)

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