F244689

General Info

Members Datasets Scaffolds Average Seq Length
164 115 328 308

Family's Representative Sequence

Representative Sequence 3300047673|Ga0495593_0134703|Ga0495593_0134703_60_1097
Length 338
Sequence LAVDQGRWARWLQNPETLTVSRILADVTLPDKRSLQVPEGLEGERVDAAIARLFGVSRTKAAELIGEGAVLVDGVAPLKSERIHNGALLEVELPARATPHALPAPSPVTGLEVIFDAKPVGVAAHSSPGWEGPTVVGGLLAAGYAVATSGAEERQGIVHRLDVGTSGVMVVAKSEVAYRVLKAAFKSRDVDKRYHALVQGHPDPSRGTVDAPIGRHPRDDWRWAVTASGKPSVTHYETLEAFPGASLLMVRLETGRTHQIRVHMSALRHPCIGDLTYGADPVLAETLEMTHQWLHAESLGFQHPATGEPLSFRAPYPDDLRRSLENLRTGVGSPRNSS

Samples

Sample ID Description Type Environment
1 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
12 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
13 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
14 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
15 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
28 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
29 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
30 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
31 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
32 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
33 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
34 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
35 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
36 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
37 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
38 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
39 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
40 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
41 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
42 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
43 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
44 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
45 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
46 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
51 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
59 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
60 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
61 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
62 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
63 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
64 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
65 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
66 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
69 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
70 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
71 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
74 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
75 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
76 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
77 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
78 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
79 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
80 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
83 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
84 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
89 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
90 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
93 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
94 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
95 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
96 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
97 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
98 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
99 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
100 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
101 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
102 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
103 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
104 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
105 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
106 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
107 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
108 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
109 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
110 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
111 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
112 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
113 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
114 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
115 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.59
Metatranscriptomes 0
Isolates 13.41

Biome Distribution

Category Percentage (%)
Aerial Root 0.61
Bulb 0
Endosphere 1.22
Nodule 0
Rhizoplane 1.83
Rhizosphere 76.83
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495593_0134703 3300047673 Bacteria 1253
2 Ga0065714_10079932 3300005288 Bacteria 2478
3 Ga0070658_10003548 3300005327 Bacteria 12806
4 Ga0070658_10058134 3300005327 Bacteria 3147
5 Ga0070683_100227704 3300005329 Bacteria 1772
6 Ga0070680_100000165 3300005336 Bacteria 41910
7 Ga0070668_100006036 3300005347 Bacteria 8986
8 Ga0070681_10000004 3300005458 Bacteria 205157
9 Ga0070681_10157539 3300005458 Bacteria 2195
10 Ga0070679_100000012 3300005530 Bacteria 155885
11 Ga0070679_100085660 3300005530 Bacteria 3138
12 Ga0070679_100346900 3300005530 Bacteria 1432
13 Ga0070684_100019921 3300005535 Bacteria 5560
14 Ga0070684_100028630 3300005535 Bacteria 4714
15 Ga0070717_10072032 3300006028 Bacteria 2885
16 Ga0075428_100010580 3300006844 Bacteria 10254
17 Ga0075430_100000322 3300006846 Bacteria 34136
18 Ga0075431_100001811 3300006847 Bacteria 20178
19 Ga0075431_100443632 3300006847 Bacteria 1294
20 Ga0075429_100014677 3300006880 Bacteria 6791
21 Ga0114129_10000059 3300009147 Bacteria 98984
22 Ga0157369_10199061 3300013105 Bacteria 2103
23 Ga0157372_10045958 3300013307 Bacteria 4845
24 Ga0157372_10054361 3300013307 Bacteria 4466
25 Ga0207655_1033234 3300025728 Bacteria 2341
26 Ga0207647_10033104 3300025904 Bacteria 3314
27 Ga0207707_10000159 3300025912 Bacteria 70857
28 Ga0207707_10155070 3300025912 Bacteria 2003
29 Ga0207660_10000767 3300025917 Bacteria 21346
30 Ga0207657_10084057 3300025919 Bacteria 2669
31 Ga0207652_10000106 3300025921 Bacteria 90763
32 Ga0207664_10257872 3300025929 Bacteria 1524
33 Ga0207661_10209342 3300025944 Bacteria 1718
34 Ga0207661_10334738 3300025944 Bacteria 1363
35 Ga0207667_10069211 3300025949 Bacteria 3674
36 Ga0265336_10009139 3300028666 Bacteria 3439
37 Ga0307515_10090028 3300028794 Bacteria 3854
38 Ga0265338_10111092 3300028800 Bacteria 2207
39 Ga0307512_10186458 3300030522 Bacteria 1154
40 Ga0265330_10046557 3300031235 Bacteria 1911
41 Ga0265325_10003061 3300031241 Bacteria 11047
42 Ga0265340_10010222 3300031247 Bacteria 5022
43 Ga0265339_10014632 3300031249 Bacteria 4723
44 Ga0265327_10036892 3300031251 Bacteria 2682
45 Ga0265316_10036714 3300031344 Bacteria 3961
46 Ga0307509_10387381 3300031507 Bacteria 1109
47 Ga0307408_100274631 3300031548 Bacteria 1401
48 Ga0265313_10027502 3300031595 Bacteria 2975
49 Ga0265314_10051871 3300031711 Bacteria 2855
50 Ga0307516_10123539 3300031730 Bacteria 2376
51 Ga0307405_10110893 3300031731 Bacteria 1858
52 Ga0307405_10151681 3300031731 Bacteria 1630
53 Ga0307405_10246239 3300031731 Bacteria 1327
54 Ga0307413_10008003 3300031824 Bacteria 4956
55 Ga0307518_10000573 3300031838 Bacteria 27956
56 Ga0307518_10120387 3300031838 Bacteria 1858
57 Ga0307410_10005818 3300031852 Bacteria 6577
58 Ga0307410_10005940 3300031852 Bacteria 6528
59 Ga0307410_10142204 3300031852 Bacteria 1776
60 Ga0307406_10134474 3300031901 Bacteria 1740
61 Ga0307407_10007344 3300031903 Bacteria 4984
62 Ga0307407_10021399 3300031903 Bacteria 3334
63 Ga0307407_10032461 3300031903 Bacteria 2839
64 Ga0307407_10046872 3300031903 Bacteria 2449
65 Ga0307407_10082379 3300031903 Bacteria 1949
66 Ga0307409_100002990 3300031995 Bacteria 9014
67 Ga0307409_100069176 3300031995 Bacteria 2796
68 Ga0307409_100108912 3300031995 Bacteria 2318
69 Ga0307416_100017811 3300032002 Bacteria 4983
70 Ga0307416_100179098 3300032002 Bacteria 1984
71 Ga0307414_10224163 3300032004 Bacteria 1545
72 Ga0307414_10290835 3300032004 Bacteria 1377
73 Ga0307411_10045130 3300032005 Bacteria 2833
74 Ga0307411_10124956 3300032005 Bacteria 1869
75 Ga0307411_10147441 3300032005 Bacteria 1744
76 Ga0307415_100017868 3300032126 Bacteria 4264
77 Ga0307415_100028211 3300032126 Bacteria 3567
78 Ga0307415_100060367 3300032126 Bacteria 2620
79 Ga0373956_0001425 3300035119 Bacteria 9884
80 Ga0395900_0015688 3300037418 Bacteria 7723
81 Ga0395900_0024952 3300037418 Bacteria 6118
82 Ga0395898_0428229 3300037466 Bacteria 1261
83 Ga0436364_1405892 3300037853 Bacteria 2077
84 Ga0395901_0299586 3300038443 Bacteria 1667
85 Ga0436365_1419628 3300039437 Bacteria 1499
86 Ga0466969_0147956 3300044656 Bacteria 1083
87 Ga0466969_0158175 3300044656 Bacteria 1042
88 Ga0466966_0010281 3300044684 Bacteria 6210
89 Ga0466966_0055115 3300044684 Bacteria 2517
90 Ga0466963_0174251 3300044694 Bacteria 1500
91 Ga0466968_0058708 3300044735 Bacteria 1656
92 Ga0466970_0009502 3300044765 Bacteria 4917
93 Ga0466970_0061043 3300044765 Bacteria 2019
94 Ga0466970_0153157 3300044765 Bacteria 1273
95 Ga0466957_0003394 3300044842 Bacteria 8749
96 Ga0466957_0123565 3300044842 Bacteria 1652
97 Ga0466960_0043869 3300044901 Bacteria 2130
98 Ga0466960_0071399 3300044901 Bacteria 1729
99 Ga0466960_0187231 3300044901 Bacteria 1125
100 Ga0466958_0044346 3300045836 Bacteria 2680
101 Ga0466967_0010533 3300045976 Bacteria 6943
102 Ga0466967_0034255 3300045976 Bacteria 4309
103 Ga0466967_0085288 3300045976 Bacteria 2859
104 Ga0466967_0113500 3300045976 Bacteria 2493
105 Ga0466967_0194419 3300045976 Bacteria 1919
106 Ga0466967_0243314 3300045976 Bacteria 1717
107 Ga0466967_0266680 3300045976 Bacteria 1639
108 Ga0466967_0408216 3300045976 Bacteria 1322
109 Ga0495641_0091392 3300046461 Bacteria 1360
110 Ga0495658_0082678 3300046683 Bacteria 1887
111 Ga0496106_0206806 3300048909 Bacteria 1563
112 Ga0496108_0364820 3300048911 Bacteria 1261
113 Ga0496114_0031700 3300048917 Bacteria 4348
114 Ga0496117_0005780 3300048920 Bacteria 12846
115 Ga0496117_0009560 3300048920 Bacteria 8992
116 Ga0496118_0002209 3300048921 Bacteria 27013
117 Ga0496118_0015976 3300048921 Bacteria 6914
118 Ga0496120_0015363 3300048923 Bacteria 5056
119 Ga0496122_0000353 3300048925 Bacteria 99072
120 Ga0496122_0000911 3300048925 Bacteria 54375
121 Ga0496123_0000372 3300048926 Bacteria 84144
122 Ga0496124_0000439 3300048927 Bacteria 73567
123 Ga0496124_0004783 3300048927 Bacteria 15590
124 Ga0496124_0023303 3300048927 Bacteria 5654
125 Ga0496125_0000172 3300048928 Bacteria 144915
126 Ga0496125_0001197 3300048928 Bacteria 39065
127 Ga0501042_0003098 3300049578 Bacteria 10342
128 Ga0501047_0000018 3300049581 Bacteria 274180
129 Ga0501047_0071579 3300049581 Bacteria 3337
130 Ga0501069_0002165 3300049585 Bacteria 9887
131 Ga0501070_0004548 3300049586 Bacteria 11895
132 Ga0501073_0184413 3300049589 Bacteria 1444
133 Ga0501080_0000253 3300049742 Bacteria 40425
134 Ga0501083_0100963 3300049744 Bacteria 1902
135 Ga0501044_0002197 3300049823 Bacteria 22378
136 nmdc:mga05p37_183_c1 3300050507 Bacteria 61506
137 nmdc:mga09592_38_c2 3300050508 Bacteria 42368
138 nmdc:mga0qj67_31_c3 3300050509 Bacteria 66411
139 nmdc:mga06r32_19_c1 3300050510 Bacteria 98901
140 nmdc:mga06r32_80_c4 3300050510 Bacteria 28453
141 Ga0500616_0000076 3300053153 Bacteria 216836
142 Ga0500645_006418 3300053730 Bacteria 4200
143 2586059635 2585427649 Bacteria 9053857
144 2588108198 2585428157 Bacteria 3018951
145 2809591597 2808606522 Bacteria 9488490
146 2837273175 2837268691 Bacteria 7850704
147 2857480118 2857479173 Bacteria 2469263
148 2857633604 2857632687 Bacteria 2448521
149 2868089194 2868088558 Bacteria 7609351
150 2870802289 2870801768 Bacteria 2710986
151 2870804371 2870804320 Bacteria 2552467
152 2899361942 2899359706 Bacteria 10940472
153 2904502704 2904501621 Bacteria 3401437
154 2908677613 2908674828 Bacteria 3382763
155 2909075186 2909074476 Bacteria 3436050
156 2915772892 2915768154 Bacteria 8424322
157 2917744690 2917736166 Bacteria 9690793
158 2919040599 2919039151 Bacteria 3391018
159 2919043615 2919042368 Bacteria 3905917
160 2928108269 2928104781 Bacteria 3877447
161 2928501577 2928500415 Bacteria 3384541
162 2984553833 2984551494 Bacteria 3877562
163 8004214387 8004212874 Bacteria 2861420
164 8057349052 8057345674 Bacteria 4160394
165 Ga0495593_0134703
166 Ga0065714_10079932
167 Ga0070658_10003548
168 Ga0070658_10058134
169 Ga0070683_100227704
170 Ga0070680_100000165
171 Ga0070668_100006036
172 Ga0070681_10000004
173 Ga0070681_10157539
174 Ga0070679_100000012
175 Ga0070679_100085660
176 Ga0070679_100346900
177 Ga0070684_100019921
178 Ga0070684_100028630
179 Ga0070717_10072032
180 Ga0075428_100010580
181 Ga0075430_100000322
182 Ga0075431_100001811
183 Ga0075431_100443632
184 Ga0075429_100014677
185 Ga0114129_10000059
186 Ga0157369_10199061
187 Ga0157372_10045958
188 Ga0157372_10054361
189 Ga0207655_1033234
190 Ga0207647_10033104
191 Ga0207707_10000159
192 Ga0207707_10155070
193 Ga0207660_10000767
194 Ga0207657_10084057
195 Ga0207652_10000106
196 Ga0207664_10257872
197 Ga0207661_10209342
198 Ga0207661_10334738
199 Ga0207667_10069211
200 Ga0265336_10009139
201 Ga0307515_10090028
202 Ga0265338_10111092
203 Ga0307512_10186458
204 Ga0265330_10046557
205 Ga0265325_10003061
206 Ga0265340_10010222
207 Ga0265339_10014632
208 Ga0265327_10036892
209 Ga0265316_10036714
210 Ga0307509_10387381
211 Ga0307408_100274631
212 Ga0265313_10027502
213 Ga0265314_10051871
214 Ga0307516_10123539
215 Ga0307405_10110893
216 Ga0307405_10151681
217 Ga0307405_10246239
218 Ga0307413_10008003
219 Ga0307518_10000573
220 Ga0307518_10120387
221 Ga0307410_10005818
222 Ga0307410_10005940
223 Ga0307410_10142204
224 Ga0307406_10134474
225 Ga0307407_10007344
226 Ga0307407_10021399
227 Ga0307407_10032461
228 Ga0307407_10046872
229 Ga0307407_10082379
230 Ga0307409_100002990
231 Ga0307409_100069176
232 Ga0307409_100108912
233 Ga0307416_100017811
234 Ga0307416_100179098
235 Ga0307414_10224163
236 Ga0307414_10290835
237 Ga0307411_10045130
238 Ga0307411_10124956
239 Ga0307411_10147441
240 Ga0307415_100017868
241 Ga0307415_100028211
242 Ga0307415_100060367
243 Ga0373956_0001425
244 Ga0395900_0015688
245 Ga0395900_0024952
246 Ga0395898_0428229
247 Ga0436364_1405892
248 Ga0395901_0299586
249 Ga0436365_1419628
250 Ga0466969_0147956
251 Ga0466969_0158175
252 Ga0466966_0010281
253 Ga0466966_0055115
254 Ga0466963_0174251
255 Ga0466968_0058708
256 Ga0466970_0009502
257 Ga0466970_0061043
258 Ga0466970_0153157
259 Ga0466957_0003394
260 Ga0466957_0123565
261 Ga0466960_0043869
262 Ga0466960_0071399
263 Ga0466960_0187231
264 Ga0466958_0044346
265 Ga0466967_0010533
266 Ga0466967_0034255
267 Ga0466967_0085288
268 Ga0466967_0113500
269 Ga0466967_0194419
270 Ga0466967_0243314
271 Ga0466967_0266680
272 Ga0466967_0408216
273 Ga0495641_0091392
274 Ga0495658_0082678
275 Ga0496106_0206806
276 Ga0496108_0364820
277 Ga0496114_0031700
278 Ga0496117_0005780
279 Ga0496117_0009560
280 Ga0496118_0002209
281 Ga0496118_0015976
282 Ga0496120_0015363
283 Ga0496122_0000353
284 Ga0496122_0000911
285 Ga0496123_0000372
286 Ga0496124_0000439
287 Ga0496124_0004783
288 Ga0496124_0023303
289 Ga0496125_0000172
290 Ga0496125_0001197
291 Ga0501042_0003098
292 Ga0501047_0000018
293 Ga0501047_0071579
294 Ga0501069_0002165
295 Ga0501070_0004548
296 Ga0501073_0184413
297 Ga0501080_0000253
298 Ga0501083_0100963
299 Ga0501044_0002197
300 nmdc:mga05p37_183_c1
301 nmdc:mga09592_38_c2
302 nmdc:mga0qj67_31_c3
303 nmdc:mga06r32_19_c1
304 nmdc:mga06r32_80_c4
305 Ga0500616_0000076
306 Ga0500645_006418
307 2586059635
308 2588108198
309 2809591597
310 2837273175
311 2857480118
312 2857633604
313 2868089194
314 2870802289
315 2870804371
316 2899361942
317 2904502704
318 2908677613
319 2909075186
320 2915772892
321 2917744690
322 2919040599
323 2919043615
324 2928108269
325 2928501577
326 2984553833
327 8004214387
328 8057349052

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

112

266

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1v9f-assembly1.cif.gz_A crystal structure of catalytic domain of pseudouridine synthase rlud from escherichia coli 0.8865 73 302
1prz-assembly1.cif.gz_A crystal structure of pseudouridine synthase rlud catalytic module 0.8829 72 302
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.8746 79 301
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.8745 74 287
8ced-assembly1.cif.gz_F rnase r bound to a 30s degradation intermediate (state i - head-turning) 0.8742 16 58
ID Description Score Start End Superfamily
af_P9WHQ3_3_67_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9976 4 65 3.10.290.10
af_P9WHQ3_81_307_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9758 82 302 3.30.2350.10
af_P9WHQ3_81_307_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9462 82 302 3.30.2350.10
af_I1JSZ4_206_438_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9454 128 301 3.30.2350.10
af_Q2FZ84_189_243_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9379 14 62 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A448UT97-F1-model_v4 Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.23) 0.9922 141 301 GO:0000455
GO:0003723
GO:0160140
AF-A0A3D2VKT9-F1-model_v4 RNA pseudouridine synthase 0.987 181 301 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A6J6GGR7-F1-model_v4 Unannotated protein 0.9812 174 301 GO:0000455
GO:0003723
GO:0009982
AF-A0A349CVW0-F1-model_v4 RNA pseudouridine synthase 0.9748 1 117 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A2Z5QZT0-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9684 63 301 GO:0000455
GO:0003723
GO:0009982
GO:0140098

Map