F242626

General Info

Members Datasets Scaffolds Average Seq Length
163 96 163 468

Family's Representative Sequence

Representative Sequence 3300050508|nmdc:mga09592_168735_c1|nmdc:mga09592_168735_c1_34_1740
Length 489
Sequence VSAILVVDDESSMREFLGICLKRSGHQVTAAASLADLRLGGGTDGLMVLDAVKQRAPETQVVVITAYATADTALSAMKRGAYDYLTKPFKIDEITVVIERALEKRRLVRENATLRDELHSRVRLDRLLGKSQAMQRVFDLVRKVAQSRTTVLLTGESGTGKELVARAIHNEGSRAQKPFLAVNCGAIPDAILESELFGHVKGAFTGAAVDKVGLFESATAGTLLLDEVGELPAQLQVKLLRALQERKIKPVGGVHEREVDVRVIAATHRDLEAEVGRGAFRQDLYYRLNVIEIRLPPLFQRKEDIPLLVDHFLRKFAAEQGRKAPLIEPRTLAALVDYDYPGNVRELENLIERAMTLDAGPVLARDALPSLLPQRPQRVASSGGSRASGTWAAATRGSTVPIPRLANVPPEGIDLEQVMGDYERELLNAALRRTGGVRKEAARLLGVTFRSLRYRLAKLGIDPDAASDDPGSEDPPADPRRQITQPPTK

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
5 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
6 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
12 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
13 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
14 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
15 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
16 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
19 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
28 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
29 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
30 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
31 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
32 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
33 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
34 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
35 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
36 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
37 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
38 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
39 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
40 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
41 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
42 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
43 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
48 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
51 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
56 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
57 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
58 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
59 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
60 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
61 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
62 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
63 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
64 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
65 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
66 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
67 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
70 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
80 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
81 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
89 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
90 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
91 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
92 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
93 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
94 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
95 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
96 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.52
Nodule 0
Rhizoplane 0
Rhizosphere 88.34
Stem 0
Stem Tuber 0
Unclassified 6.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10062896 3300003323 Bacteria 5944
2 Ga0070690_100003859 3300005330 Bacteria 8257
3 Ga0070680_100058116 3300005336 Bacteria 3163
4 Ga0070680_100084624 3300005336 Bacteria 2619
5 Ga0070710_10035215 3300005437 Bacteria 2729
6 Ga0070678_100007621 3300005456 Bacteria 6430
7 Ga0070685_10095886 3300005466 Bacteria 1804
8 Ga0070706_100036891 3300005467 Bacteria 4515
9 Ga0070698_100000426 3300005471 Bacteria 45016
10 Ga0070679_100000530 3300005530 Bacteria 32442
11 Ga0070679_100034367 3300005530 Bacteria 5024
12 Ga0070679_100057473 3300005530 Bacteria 3878
13 Ga0070717_10058588 3300006028 Bacteria 3185
14 Ga0075428_100083987 3300006844 Bacteria 3474
15 Ga0075430_100027172 3300006846 Bacteria 4865
16 Ga0075429_100057429 3300006880 Bacteria 3388
17 Ga0075429_100172769 3300006880 Bacteria 1893
18 Ga0111539_10070450 3300009094 Bacteria 4128
19 Ga0105243_10188552 3300009148 Bacteria 1799
20 Ga0157374_10035605 3300013296 Bacteria 4555
21 Ga0157374_10306200 3300013296 Bacteria 1573
22 Ga0157372_10322010 3300013307 Bacteria 1800
23 Ga0213876_10013969 3300021384 Bacteria 4256
24 Ga0207707_10134230 3300025912 Bacteria 2164
25 Ga0207652_10020928 3300025921 Bacteria 5393
26 Ga0207652_10057497 3300025921 Bacteria 3349
27 Ga0207652_10092639 3300025921 Bacteria 2658
28 Ga0207659_10037068 3300025926 Bacteria 3383
29 Ga0207670_10129248 3300025936 Bacteria 1848
30 Ga0207661_10027115 3300025944 Bacteria 4374
31 Ga0207708_10081097 3300026075 Bacteria 2493
32 Ga0207683_10001147 3300026121 Bacteria 24097
33 Ga0207683_10021632 3300026121 Bacteria 5511
34 Ga0268264_10008906 3300028381 Bacteria 8324
35 Ga0265337_1018526 3300028556 Bacteria 2209
36 Ga0265334_10011427 3300028573 Bacteria 3740
37 Ga0265318_10002958 3300028577 Bacteria 8798
38 Ga0265323_10000223 3300028653 Bacteria 33336
39 Ga0265323_10022698 3300028653 Bacteria 2397
40 Ga0265322_10004300 3300028654 Bacteria 4254
41 Ga0265322_10027828 3300028654 Bacteria 1616
42 Ga0307517_10073997 3300028786 Bacteria 3011
43 Ga0307515_10025161 3300028794 Bacteria 10317
44 Ga0265338_10002989 3300028800 Bacteria 24499
45 Ga0265338_10005603 3300028800 Bacteria 16319
46 Ga0265338_10026140 3300028800 Bacteria 5898
47 Ga0265338_10067742 3300028800 Bacteria 3081
48 Ga0265338_10120085 3300028800 Bacteria 2097
49 Ga0265338_10197743 3300028800 Bacteria 1518
50 Ga0265330_10000669 3300031235 Bacteria 21995
51 Ga0265330_10000916 3300031235 Bacteria 18206
52 Ga0265330_10012193 3300031235 Bacteria 4022
53 Ga0265330_10017315 3300031235 Bacteria 3319
54 Ga0265330_10027777 3300031235 Bacteria 2554
55 Ga0265332_10000557 3300031238 Bacteria 25083
56 Ga0265332_10006602 3300031238 Bacteria 5255
57 Ga0265332_10018292 3300031238 Bacteria 3092
58 Ga0265328_10000444 3300031239 Bacteria 19287
59 Ga0265328_10000556 3300031239 Bacteria 17356
60 Ga0265328_10001804 3300031239 Bacteria 9774
61 Ga0265320_10001572 3300031240 Bacteria 16403
62 Ga0265320_10001809 3300031240 Bacteria 15167
63 Ga0265320_10006233 3300031240 Bacteria 7537
64 Ga0265325_10002593 3300031241 Bacteria 12119
65 Ga0265329_10000429 3300031242 Bacteria 22117
66 Ga0265329_10001313 3300031242 Bacteria 12076
67 Ga0265329_10004483 3300031242 Bacteria 5794
68 Ga0265340_10000378 3300031247 Bacteria 23665
69 Ga0265339_10000059 3300031249 Bacteria 98287
70 Ga0265339_10020424 3300031249 Bacteria 3870
71 Ga0265339_10027846 3300031249 Bacteria 3219
72 Ga0265331_10000050 3300031250 Bacteria 181286
73 Ga0265331_10003507 3300031250 Bacteria 10099
74 Ga0265331_10003885 3300031250 Bacteria 9447
75 Ga0265331_10011607 3300031250 Bacteria 4818
76 Ga0265331_10015526 3300031250 Bacteria 4018
77 Ga0265327_10000109 3300031251 Bacteria 181275
78 Ga0265327_10007912 3300031251 Bacteria 8057
79 Ga0265316_10000442 3300031344 Bacteria 47118
80 Ga0265316_10001987 3300031344 Bacteria 21533
81 Ga0265316_10002057 3300031344 Bacteria 21182
82 Ga0265316_10004194 3300031344 Bacteria 14409
83 Ga0265316_10005648 3300031344 Bacteria 12104
84 Ga0265316_10009988 3300031344 Bacteria 8686
85 Ga0265316_10011921 3300031344 Bacteria 7815
86 Ga0265316_10023362 3300031344 Bacteria 5195
87 Ga0307513_10013378 3300031456 Bacteria 10073
88 Ga0307509_10007503 3300031507 Bacteria 14226
89 Ga0307509_10012373 3300031507 Bacteria 10211
90 Ga0307509_10090857 3300031507 Bacteria 3127
91 Ga0265313_10005293 3300031595 Bacteria 9542
92 Ga0265313_10013080 3300031595 Bacteria 5011
93 Ga0307508_10015062 3300031616 Bacteria 7048
94 Ga0316575_10000304 3300031665 Bacteria 13733
95 Ga0316579_10000020 3300031691 Bacteria 38222
96 Ga0265314_10000409 3300031711 Bacteria 57963
97 Ga0265314_10002658 3300031711 Bacteria 17930
98 Ga0265314_10006774 3300031711 Bacteria 10051
99 Ga0265314_10018656 3300031711 Bacteria 5402
100 Ga0265314_10028348 3300031711 Bacteria 4176
101 Ga0265342_10000071 3300031712 Bacteria 107578
102 Ga0265342_10000121 3300031712 Bacteria 87591
103 Ga0265342_10001446 3300031712 Bacteria 22113
104 Ga0265342_10001621 3300031712 Bacteria 20771
105 Ga0265342_10002966 3300031712 Bacteria 14252
106 Ga0265342_10005473 3300031712 Bacteria 9667
107 Ga0265342_10006482 3300031712 Bacteria 8715
108 Ga0316576_10000668 3300031727 Bacteria 16695
109 Ga0316576_10000860 3300031727 Bacteria 15368
110 Ga0316576_10001523 3300031727 Bacteria 12541
111 Ga0316578_10000361 3300031728 Bacteria 14461
112 Ga0316578_10001245 3300031728 Bacteria 10146
113 Ga0316578_10001319 3300031728 Bacteria 9946
114 Ga0316578_10072784 3300031728 Bacteria 2036
115 Ga0307516_10029326 3300031730 Bacteria 5563
116 Ga0307405_10024061 3300031731 Bacteria 3473
117 Ga0316577_10001571 3300031733 Bacteria 10858
118 Ga0316577_10002359 3300031733 Bacteria 9320
119 Ga0316585_10000198 3300032137 Bacteria 12381
120 Ga0316580_10000117 3300032139 Bacteria 14877
121 Ga0316580_10011692 3300032139 Bacteria 2667
122 Ga0373949_0000183 3300035090 Bacteria 24047
123 Ga0373936_0000056 3300035113 Bacteria 58196
124 Ga0373941_0006241 3300035115 Bacteria 2861
125 Ga0373954_0038289 3300035118 Bacteria 2230
126 Ga0373954_0047472 3300035118 Bacteria 2010
127 Ga0373956_0046347 3300035119 Bacteria 1942
128 Ga0373961_0000104 3300035241 Bacteria 44660
129 Ga0316574_0000114 3300035398 Bacteria 24287
130 Ga0373937_0007231 3300036401 Bacteria 9605
131 Ga0316582_0000007 3300036647 Bacteria 45992
132 Ga0316584_0000232 3300036712 Bacteria 27591
133 Ga0316584_0005117 3300036712 Bacteria 8750
134 Ga0395899_0008834 3300037312 Bacteria 7756
135 Ga0395900_0138359 3300037418 Bacteria 2494
136 Ga0395905_0029764 3300037471 Bacteria 5147
137 Ga0436361_0512439 3300039447 Bacteria 1964
138 Ga0451577_0005610 3300042876 Bacteria 12763
139 Ga0453683_0037312 3300044673 Bacteria 3058
140 Ga0453684_0000248 3300044712 Bacteria 232277
141 Ga0453684_0156823 3300044712 Bacteria 2698
142 Ga0451576_0008397 3300045051 Bacteria 12123
143 Ga0451576_0015314 3300045051 Bacteria 8498
144 Ga0451576_0021492 3300045051 Bacteria 7014
145 Ga0495667_0120652 3300046559 Bacteria 1693
146 Ga0495613_0049954 3300046689 Bacteria 3086
147 Ga0495649_0031342 3300046694 Bacteria 2933
148 Ga0501033_0174014 3300049570 Bacteria 1546
149 Ga0501047_0039753 3300049581 Bacteria 4549
150 Ga0501070_0120095 3300049586 Bacteria 2172
151 Ga0501044_0026280 3300049823 Bacteria 6164
152 nmdc:mga09592_168735_c1 3300050508 Bacteria 1892
153 nmdc:mga0qj67_41693_c1 3300050509 Bacteria 3611
154 nmdc:mga0rr50_102954_c1 3300050513 Bacteria 2246
155 Ga0500646_0015588 3300053090 Bacteria 1980
156 Ga0500640_000951 3300053095 Bacteria 8179
157 Ga0500654_082192 3300053099 Bacteria 1493
158 Ga0500554_000845 3300053102 Bacteria 6012
159 Ga0500595_000054 3300053119 Bacteria 85119
160 Ga0500614_000429 3300053123 Bacteria 10935
161 Ga0500614_001391 3300053123 Bacteria 5819
162 Ga0500642_0042376 3300053130 Bacteria 1972
163 Ga0500622_0000029 3300053156 Bacteria 213762

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0005610 Ga0451577_0005610_9672_11039 357
2 3300044673 Ga0453683_0037312 Ga0453683_0037312_1379_2746 357
3 3300045051 Ga0451576_0021492 Ga0451576_0021492_3239_4606 357
4 3300045051 Ga0451576_0015314 Ga0451576_0015314_5864_7234 358
5 3300031727 Ga0316576_10001523 Ga0316576_100015237 359
6 3300031728 Ga0316578_10000361 Ga0316578_100003612 359
7 3300031733 Ga0316577_10002359 Ga0316577_100023593 359
8 3300032139 Ga0316580_10011692 Ga0316580_100116922 359
9 3300036712 Ga0316584_0005117 Ga0316584_0005117_510_1859 359
10 3300031665 Ga0316575_10000304 Ga0316575_100003045 360
11 3300031691 Ga0316579_10000020 Ga0316579_1000002023 360
12 3300031727 Ga0316576_10000668 Ga0316576_100006687 360
13 3300031727 Ga0316576_10000860 Ga0316576_100008606 360
14 3300031728 Ga0316578_10001245 Ga0316578_100012452 360
15 3300031728 Ga0316578_10001319 Ga0316578_100013192 360
16 3300031733 Ga0316577_10001571 Ga0316577_100015712 360
17 3300032137 Ga0316585_10000198 Ga0316585_100001982 360
18 3300032139 Ga0316580_10000117 Ga0316580_100001174 360
19 3300035398 Ga0316574_0000114 Ga0316574_0000114_13477_14826 360
20 3300036647 Ga0316582_0000007 Ga0316582_0000007_9716_11065 360
21 3300036712 Ga0316584_0000232 Ga0316584_0000232_20752_22101 360
22 3300053156 Ga0500622_0000029 Ga0500622_0000029_68808_70154 360
23 3300009148 Ga0105243_10188552 Ga0105243_101885522 363
24 3300028381 Ga0268264_10008906 Ga0268264_100089067 363
25 3300031507 Ga0307509_10007503 Ga0307509_100075033 363
26 3300031239 Ga0265328_10000444 Ga0265328_100004449 364
27 3300031250 Ga0265331_10000050 Ga0265331_10000050217 364
28 3300031250 Ga0265331_10003507 Ga0265331_100035073 364
29 3300031251 Ga0265327_10000109 Ga0265327_100001098 364
30 3300031251 Ga0265327_10007912 Ga0265327_100079126 364
31 3300013307 Ga0157372_10322010 Ga0157372_103220102 365
32 3300006880 Ga0075429_100057429 Ga0075429_1000574292 366
33 3300035090 Ga0373949_0000183 Ga0373949_0000183_4864_6309 367
34 3300053090 Ga0500646_0015588 Ga0500646_0015588_188_1618 368
35 3300025944 Ga0207661_10027115 Ga0207661_100271152 372
36 3300031235 Ga0265330_10012193 Ga0265330_100121933 374
37 3300053123 Ga0500614_001391 Ga0500614_001391_846_2309 376
38 3300046559 Ga0495667_0120652 Ga0495667_0120652_378_1676 377
39 3300005467 Ga0070706_100036891 Ga0070706_1000368912 379
40 3300021384 Ga0213876_10013969 Ga0213876_100139693 379
41 3300026075 Ga0207708_10081097 Ga0207708_100810972 379
42 3300028577 Ga0265318_10002958 Ga0265318_100029584 379
43 3300028800 Ga0265338_10067742 Ga0265338_100677421 379
44 3300031235 Ga0265330_10000669 Ga0265330_100006698 379
45 3300031238 Ga0265332_10000557 Ga0265332_1000055718 379
46 3300031239 Ga0265328_10001804 Ga0265328_100018044 379
47 3300031240 Ga0265320_10001809 Ga0265320_1000180910 379
48 3300031242 Ga0265329_10004483 Ga0265329_100044832 379
49 3300031250 Ga0265331_10015526 Ga0265331_100155263 379
50 3300031344 Ga0265316_10011921 Ga0265316_100119215 379
51 3300031595 Ga0265313_10005293 Ga0265313_100052933 379
52 3300031712 Ga0265342_10006482 Ga0265342_100064822 379
53 3300049581 Ga0501047_0039753 Ga0501047_0039753_178_1587 379
54 3300049586 Ga0501070_0120095 Ga0501070_0120095_640_2049 379
55 3300049823 Ga0501044_0026280 Ga0501044_0026280_3604_5013 379
56 3300005330 Ga0070690_100003859 Ga0070690_1000038593 380
57 3300005466 Ga0070685_10095886 Ga0070685_100958862 380
58 3300005471 Ga0070698_100000426 Ga0070698_10000042621 380
59 3300025936 Ga0207670_10129248 Ga0207670_101292482 380
60 3300028786 Ga0307517_10073997 Ga0307517_100739972 380
61 3300028794 Ga0307515_10025161 Ga0307515_100251613 380
62 3300031238 Ga0265332_10006602 Ga0265332_100066022 380
63 3300031456 Ga0307513_10013378 Ga0307513_100133788 380
64 3300031507 Ga0307509_10012373 Ga0307509_100123733 380
65 3300031616 Ga0307508_10015062 Ga0307508_100150622 380
66 3300031730 Ga0307516_10029326 Ga0307516_100293266 380
67 3300035113 Ga0373936_0000056 Ga0373936_0000056_28273_29703 380
68 3300035115 Ga0373941_0006241 Ga0373941_0006241_511_1944 380
69 3300035118 Ga0373954_0047472 Ga0373954_0047472_245_1675 380
70 3300035241 Ga0373961_0000104 Ga0373961_0000104_3078_4508 380
71 3300037471 Ga0395905_0029764 Ga0395905_0029764_67_1479 380
72 3300046694 Ga0495649_0031342 Ga0495649_0031342_1263_2693 380
73 3300049570 Ga0501033_0174014 Ga0501033_0174014_16_1392 380
74 3300053095 Ga0500640_000951 Ga0500640_000951_4335_5765 380
75 3300053099 Ga0500654_082192 Ga0500654_082192_296_1474 380
76 3300053102 Ga0500554_000845 Ga0500554_000845_4242_5672 380
77 3300053119 Ga0500595_000054 Ga0500595_000054_63830_65260 380
78 3300053123 Ga0500614_000429 Ga0500614_000429_6122_7552 380
79 3300053130 Ga0500642_0042376 Ga0500642_0042376_426_1862 380
80 3300037312 Ga0395899_0008834 Ga0395899_0008834_3746_5179 381
81 3300037418 Ga0395900_0138359 Ga0395900_0138359_285_1718 381
82 3300005336 Ga0070680_100058116 Ga0070680_1000581162 382
83 3300005530 Ga0070679_100000530 Ga0070679_10000053028 382
84 3300005530 Ga0070679_100057473 Ga0070679_1000574734 382
85 3300025921 Ga0207652_10092639 Ga0207652_100926392 382
86 3300026121 Ga0207683_10021632 Ga0207683_100216322 382
87 3300035118 Ga0373954_0038289 Ga0373954_0038289_775_2217 382
88 3300005456 Ga0070678_100007621 Ga0070678_1000076215 383
89 3300006846 Ga0075430_100027172 Ga0075430_1000271722 383
90 3300009094 Ga0111539_10070450 Ga0111539_100704502 383
91 3300013296 Ga0157374_10035605 Ga0157374_100356052 383
92 3300026121 Ga0207683_10001147 Ga0207683_1000114721 383
93 3300031731 Ga0307405_10024061 Ga0307405_100240612 383
94 3300039447 Ga0436361_0512439 Ga0436361_0512439_149_1510 383
95 3300050509 nmdc:mga0qj67_41693_c1 nmdc:mga0qj67_41693_c1_1731_3167 383
96 3300005437 Ga0070710_10035215 Ga0070710_100352153 384
97 3300006028 Ga0070717_10058588 Ga0070717_100585882 384
98 3300013296 Ga0157374_10306200 Ga0157374_103062001 384
99 3300031507 Ga0307509_10090857 Ga0307509_100908572 384
100 3300005336 Ga0070680_100084624 Ga0070680_1000846242 386
101 3300005530 Ga0070679_100034367 Ga0070679_1000343672 386
102 3300025912 Ga0207707_10134230 Ga0207707_101342301 386
103 3300025921 Ga0207652_10020928 Ga0207652_100209285 386
104 3300025921 Ga0207652_10057497 Ga0207652_100574973 386
105 3300035119 Ga0373956_0046347 Ga0373956_0046347_304_1770 386
106 3300036401 Ga0373937_0007231 Ga0373937_0007231_1076_2542 386
107 3300046689 Ga0495613_0049954 Ga0495613_0049954_1586_2995 386
108 3300028800 Ga0265338_10002989 Ga0265338_1000298910 388
109 3300031239 Ga0265328_10000556 Ga0265328_100005562 388
110 3300031240 Ga0265320_10001572 Ga0265320_1000157210 388
111 3300031240 Ga0265320_10006233 Ga0265320_100062336 388
112 3300031249 Ga0265339_10027846 Ga0265339_100278461 388
113 3300031711 Ga0265314_10002658 Ga0265314_100026587 388
114 3300031711 Ga0265314_10018656 Ga0265314_100186564 388
115 3300031712 Ga0265342_10000071 Ga0265342_1000007167 388
116 3300031712 Ga0265342_10001446 Ga0265342_1000144612 388
117 3300028800 Ga0265338_10026140 Ga0265338_100261402 389
118 3300031249 Ga0265339_10000059 Ga0265339_1000005977 389
119 3300031595 Ga0265313_10013080 Ga0265313_100130804 389
120 3300050513 nmdc:mga0rr50_102954_c1 nmdc:mga0rr50_102954_c1_302_1765 389
121 3300028654 Ga0265322_10004300 Ga0265322_100043002 390
122 3300031235 Ga0265330_10017315 Ga0265330_100173152 390
123 3300031242 Ga0265329_10001313 Ga0265329_100013136 390
124 3300031249 Ga0265339_10020424 Ga0265339_100204242 390
125 3300031250 Ga0265331_10011607 Ga0265331_100116072 390
126 3300031344 Ga0265316_10005648 Ga0265316_100056486 390
127 3300031711 Ga0265314_10006774 Ga0265314_100067748 390
128 3300031711 Ga0265314_10028348 Ga0265314_100283484 390
129 3300031712 Ga0265342_10000121 Ga0265342_100001215 390
130 3300031712 Ga0265342_10005473 Ga0265342_100054736 390
131 3300025926 Ga0207659_10037068 Ga0207659_100370681 391
132 3300028556 Ga0265337_1018526 Ga0265337_10185262 391
133 3300028800 Ga0265338_10120085 Ga0265338_101200852 391
134 3300031238 Ga0265332_10018292 Ga0265332_100182922 391
135 3300031241 Ga0265325_10002593 Ga0265325_1000259310 391
136 3300031247 Ga0265340_10000378 Ga0265340_100003784 391
137 3300031250 Ga0265331_10003885 Ga0265331_100038853 391
138 3300031344 Ga0265316_10009988 Ga0265316_100099885 391
139 3300031711 Ga0265314_10000409 Ga0265314_1000040924 391
140 3300031712 Ga0265342_10002966 Ga0265342_100029664 391
141 3300031728 Ga0316578_10072784 Ga0316578_100727842 391
142 3300044712 Ga0453684_0156823 Ga0453684_0156823_1047_2480 391
143 3300045051 Ga0451576_0008397 Ga0451576_0008397_8808_10241 391
144 3300028573 Ga0265334_10011427 Ga0265334_100114272 392
145 3300028653 Ga0265323_10000223 Ga0265323_1000022314 392
146 3300028653 Ga0265323_10022698 Ga0265323_100226981 392
147 3300028654 Ga0265322_10027828 Ga0265322_100278281 392
148 3300028800 Ga0265338_10005603 Ga0265338_1000560313 392
149 3300028800 Ga0265338_10197743 Ga0265338_101977431 392
150 3300031235 Ga0265330_10000916 Ga0265330_100009166 392
151 3300031235 Ga0265330_10027777 Ga0265330_100277772 392
152 3300031242 Ga0265329_10000429 Ga0265329_1000042910 392
153 3300031344 Ga0265316_10000442 Ga0265316_100004424 392
154 3300031344 Ga0265316_10001987 Ga0265316_1000198718 392
155 3300031344 Ga0265316_10002057 Ga0265316_1000205710 392
156 3300031344 Ga0265316_10004194 Ga0265316_100041945 392
157 3300031344 Ga0265316_10023362 Ga0265316_100233622 392
158 3300031712 Ga0265342_10001621 Ga0265342_100016218 392
159 3300044712 Ga0453684_0000248 Ga0453684_0000248_209295_210728 392
160 3300006844 Ga0075428_100083987 Ga0075428_1000839871 397
161 3300006880 Ga0075429_100172769 Ga0075429_1001727691 399
162 3300050508 nmdc:mga09592_168735_c1 nmdc:mga09592_168735_c1_34_1740 399
163 3300003323 rootH1_10062896 rootH1_100628965 401

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

127

294

0.99

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

128

298

0.96

PF00072

Response_reg

Response regulator receiver domain

32

99

0.95

PF02954

HTH_8

Bacterial regulatory protein, Fis family

419

459

0.95

PF07728

AAA_5

AAA domain (dynein-related subfamily)

150

287

0.82

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

151

288

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ety-assembly1.cif.gz_A the crystal structure of e. coli wild-type fis 0.9671 332 378
6luf-assembly4.cif.gz_D trans-acting mutant y290a of the central aaa+ domain of the flagellar regulatory protein flrc 0.9666 65 302
1etv-assembly1.cif.gz_A the crystal structure of e. coli fis mutant g72a 0.9651 332 378
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.9643 61 303
8p53-assembly1.cif.gz_D cryo-em structure of the c-di-gmp-free fleq-flen master regulator complex of p. aeruginosa 0.9642 57 302
ID Description Score Start End Superfamily
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9858 61 227 3.40.50.300
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9787 231 296 1.10.8.60
1ojlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9714 61 229 3.40.50.300
af_P07604_193_369_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9684 56 230 3.40.50.300
1etyA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9671 332 378 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7C5Q6C3-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9963 61 231 GO:0005524
GO:0006355
GO:0016887
AF-A0A496Z807-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9947 62 231 GO:0005524
GO:0006355
GO:0016887
AF-A0A529FBT6-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9912 96 219 GO:0005524
GO:0006355
AF-A0A351A3T2-F1-model_v4 DNA-binding transcriptional regulator NtrC (Nitrogen regulation protein NR(I)) (Nitrogen regulator I) 0.9911 61 166 GO:0000160
GO:0005524
GO:0006355
AF-A0A509LD02-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9882 62 248 GO:0005524
GO:0006355
GO:0016887

Feature Viewer

pLDDT pTM Quality
82.17 0.62 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map