F241949

General Info

Members Datasets Scaffolds Average Seq Length
163 119 326 326

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10048793|Ga0307508_100487933
Length 369
Sequence VELELRHLRIVCAIAEAGSVTKAAAALGLAQPALTTQLQRIERILGGTLFTRDRRGVHPTALGDLVLARARVLIPAISGLHTEASELITAADPGRFRVGASTGPIVGGLMQRLADAHPDGQVSIHTTWSENEIGQMVADGRLDYALVGACANAAPAAAYALAWRTISIDPIWVLLREAHPLASRDEVELAELAAERWVTAPGDGCFHECFAAACARAGFAPRAPTELDVGGAFDLVAAGKAVALAQGAVRSMAGVVAVPLTGSPLRWRHLLGWDPESAAARRAAEVAALAADAYLEVVGQRPRYARWLAGNPEFGVQPEALAPERQDAFPVPPVDGERAAERRLLGDRADQHPGLPGVVAGQRPLPRVR

Samples

Sample ID Description Type Environment
1 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
12 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
34 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
35 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
36 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
37 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
38 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
39 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
40 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
41 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
42 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
43 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
44 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
45 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
46 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
49 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
50 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
51 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
52 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
53 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
54 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
55 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
56 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
57 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
63 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
64 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
65 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
66 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
67 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
68 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
72 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
73 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
74 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
75 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
76 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
77 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
78 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
79 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
80 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
81 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
82 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
83 2643221578 Streptomyces sp. Root63 Isolate Unclassified
84 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
85 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
86 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
87 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
88 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
89 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
90 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
91 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
92 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
93 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
94 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
95 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
96 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
97 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
98 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
99 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
100 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
101 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
102 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
103 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
104 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
105 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
106 2891562705 Microbispora tritici MT50 Isolate Unclassified
107 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
108 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
109 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
110 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
111 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
112 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
113 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
114 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
115 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
116 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
117 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
118 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
119 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 74.23
Metatranscriptomes 0
Isolates 25.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.68
Nodule 0
Rhizoplane 0.61
Rhizosphere 61.96
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307508_10048793 3300031616 Bacteria 3771
2 rootL2_10024997 3300003322 Bacteria 1569
3 Ga0070683_100001649 3300005329 Bacteria 17295
4 Ga0068869_100141606 3300005334 Bacteria 1857
5 Ga0070668_100010085 3300005347 Bacteria 7004
6 Ga0070674_100133374 3300005356 Bacteria 1855
7 Ga0070684_100001388 3300005535 Bacteria 17398
8 Ga0070665_100084802 3300005548 Bacteria 3173
9 Ga0070665_100385102 3300005548 Bacteria 1410
10 Ga0070664_100018316 3300005564 Bacteria 5750
11 Ga0068857_100142107 3300005577 Bacteria 2170
12 Ga0068858_100012892 3300005842 Bacteria 7882
13 Ga0081540_1030205 3300005983 Bacteria 3005
14 Ga0075428_100000806 3300006844 Bacteria 32759
15 Ga0075428_100035067 3300006844 Bacteria 5531
16 Ga0075430_100163961 3300006846 Bacteria 1850
17 Ga0075431_100005410 3300006847 Bacteria 12612
18 Ga0075429_100058898 3300006880 Bacteria 3345
19 Ga0114129_10024008 3300009147 Bacteria 8642
20 Ga0105238_10450960 3300009551 Bacteria 1283
21 Ga0157378_10289549 3300013297 Bacteria 1581
22 Ga0157372_10623567 3300013307 Bacteria 1256
23 Ga0157375_10432809 3300013308 Bacteria 1481
24 Ga0207661_10000804 3300025944 Bacteria 20480
25 Ga0207679_10007613 3300025945 Bacteria 6877
26 Ga0207668_10044988 3300025972 Bacteria 3007
27 Ga0207658_10069384 3300025986 Bacteria 2663
28 Ga0207677_10202527 3300026023 Bacteria 1579
29 Ga0207703_10020022 3300026035 Bacteria 5228
30 Ga0207641_10272380 3300026088 Bacteria 1589
31 Ga0207674_10162116 3300026116 Bacteria 2190
32 Ga0207675_100059767 3300026118 Bacteria 3557
33 Ga0268266_10080986 3300028379 Bacteria 2830
34 Ga0268266_10354065 3300028379 Bacteria 1380
35 Ga0268264_10279132 3300028381 Bacteria 1564
36 Ga0268264_10446487 3300028381 Bacteria 1252
37 Ga0307515_10000227 3300028794 Bacteria 139393
38 Ga0307515_10000526 3300028794 Bacteria 91263
39 Ga0307515_10008672 3300028794 Bacteria 19783
40 Ga0307515_10009039 3300028794 Bacteria 19336
41 Ga0307515_10019161 3300028794 Bacteria 12337
42 Ga0307515_10156168 3300028794 Bacteria 2353
43 Ga0307512_10026842 3300030522 Bacteria 5079
44 Ga0307512_10049466 3300030522 Bacteria 3389
45 Ga0307512_10069943 3300030522 Bacteria 2618
46 Ga0307513_10003329 3300031456 Bacteria 21879
47 Ga0307509_10007475 3300031507 Bacteria 14258
48 Ga0307509_10020270 3300031507 Bacteria 7548
49 Ga0307509_10061894 3300031507 Bacteria 3949
50 Ga0307509_10215941 3300031507 Bacteria 1737
51 Ga0307408_100086032 3300031548 Bacteria 2362
52 Ga0307508_10004010 3300031616 Bacteria 14594
53 Ga0307508_10018404 3300031616 Bacteria 6352
54 Ga0307508_10038449 3300031616 Bacteria 4302
55 Ga0307508_10046754 3300031616 Bacteria 3863
56 Ga0307508_10090078 3300031616 Bacteria 2654
57 Ga0307516_10001067 3300031730 Bacteria 38191
58 Ga0307516_10007120 3300031730 Bacteria 12920
59 Ga0307516_10007828 3300031730 Bacteria 12191
60 Ga0307516_10031263 3300031730 Bacteria 5366
61 Ga0307516_10055685 3300031730 Bacteria 3859
62 Ga0307516_10056673 3300031730 Bacteria 3820
63 Ga0307516_10254300 3300031730 Bacteria 1450
64 Ga0307405_10069334 3300031731 Bacteria 2260
65 Ga0307405_10149514 3300031731 Bacteria 1640
66 Ga0307413_10014751 3300031824 Bacteria 3982
67 Ga0307413_10076938 3300031824 Bacteria 2123
68 Ga0307413_10086303 3300031824 Bacteria 2029
69 Ga0307413_10303335 3300031824 Bacteria 1212
70 Ga0307518_10006155 3300031838 Bacteria 8590
71 Ga0307410_10362170 3300031852 Bacteria 1162
72 Ga0326468_10000617 3300031889 Bacteria 3665
73 Ga0307406_10009188 3300031901 Bacteria 5537
74 Ga0307407_10135913 3300031903 Bacteria 1579
75 Ga0307409_100013911 3300031995 Bacteria 5205
76 Ga0307409_100045552 3300031995 Bacteria 3312
77 Ga0307416_100006207 3300032002 Bacteria 7457
78 Ga0307416_100371747 3300032002 Bacteria 1456
79 Ga0307414_10377415 3300032004 Bacteria 1225
80 Ga0307415_100030122 3300032126 Bacteria 3478
81 Ga0307415_100034174 3300032126 Bacteria 3307
82 Ga0307415_100036245 3300032126 Bacteria 3231
83 Ga0307415_100058765 3300032126 Bacteria 2648
84 Ga0307415_100190150 3300032126 Bacteria 1619
85 Ga0307507_10031795 3300033179 Bacteria 5529
86 Ga0307507_10102622 3300033179 Bacteria 2384
87 Ga0307510_10148123 3300033180 Bacteria 1974
88 Ga0373940_0013172 3300035088 Bacteria 1994
89 Ga0373951_0000015 3300035091 Bacteria 69872
90 Ga0373941_0011871 3300035115 Bacteria 2263
91 Ga0373942_0000135 3300035207 Bacteria 17532
92 Ga0373942_0000572 3300035207 Bacteria 10330
93 Ga0373962_0001772 3300035242 Bacteria 5139
94 Ga0395905_0286240 3300037471 Bacteria 1535
95 Ga0395901_0006876 3300038443 Bacteria 11492
96 Ga0451833_1069406 3300041491 Bacteria 1257
97 Ga0466972_0061100 3300044658 Bacteria 1807
98 Ga0466970_0086524 3300044765 Bacteria 1698
99 Ga0466960_0016801 3300044901 Bacteria 3181
100 Ga0466960_0024066 3300044901 Bacteria 2743
101 Ga0466967_0219523 3300045976 Bacteria 1806
102 Ga0495639_0034835 3300046475 Bacteria 2252
103 Ga0495606_0000540 3300046507 Bacteria 60764
104 Ga0495606_0000544 3300046507 Bacteria 60468
105 Ga0495668_0000323 3300046616 Bacteria 65541
106 Ga0495668_0000362 3300046616 Bacteria 60088
107 Ga0495626_0000118 3300048091 Bacteria 103373
108 Ga0495626_0000186 3300048091 Bacteria 75709
109 Ga0496108_0000124 3300048911 Bacteria 76319
110 Ga0496123_0020527 3300048926 Bacteria 5164
111 Ga0501033_0152605 3300049570 Bacteria 1666
112 nmdc:mga05p37_23765_c1 3300050507 Bacteria 7443
113 nmdc:mga09592_15103_c1 3300050508 Bacteria 6308
114 nmdc:mga0qj67_6376_c1 3300050509 Bacteria 8666
115 nmdc:mga06r32_4533_c1 3300050510 Bacteria 12450
116 Ga0500644_0014175 3300053088 Bacteria 2244
117 Ga0500644_0032381 3300053088 Bacteria 1670
118 Ga0500646_0000113 3300053090 Bacteria 23019
119 Ga0500650_0142821 3300053098 Bacteria 1109
120 Ga0500652_066601 3300053131 Bacteria 1489
121 Ga0500600_0067248 3300053149 Bacteria 1976
122 2547411408 2547132111 Bacteria 8013147
123 2554260901 2554235005 Bacteria 6457341
124 2586060345 2585427649 Bacteria 9053857
125 2643901949 2643221578 Bacteria 9213798
126 2643944240 2643221587 Bacteria 7586415
127 2644017172 2643221601 Bacteria 7493239
128 2644173867 2643221631 Bacteria 8168043
129 2644408093 2643221673 Bacteria 9196637
130 2644431086 2643221677 Bacteria 7584031
131 2644455464 2643221681 Bacteria 3707866
132 2676484323 2675903059 Bacteria 8644972
133 2753262744 2751185782 Bacteria 11227053
134 2753263639 2751185782 Bacteria 11227053
135 2784589722 2784132148 Bacteria 8627943
136 2795792523 2795385472 Bacteria 6627535
137 2804849539 2802429296 Bacteria 7227771
138 2809590674 2808606522 Bacteria 9488490
139 2819698839 2818991463 Bacteria 7948711
140 2856745963 2856741275 Bacteria 8096094
141 2862293792 2862290372 Bacteria 7471434
142 2873153985 2873151551 Bacteria 8625867
143 2873321804 2873314349 Bacteria 8512634
144 2875397744 2875391855 Bacteria 7600475
145 2884697220 2884693830 Bacteria 11273186
146 2887481669 2887478801 Bacteria 8972725
147 2887484774 2887478801 Bacteria 8972725
148 2891398170 2891395885 Bacteria 9251614
149 2891555281 2891554331 Bacteria 8812224
150 2891566625 2891562705 Bacteria 8039471
151 2895452729 2895442618 Bacteria 11027144
152 2912727382 2912723979 Bacteria 8557534
153 2915770583 2915768154 Bacteria 8424322
154 2918508170 2918501144 Bacteria 8668083
155 2946046783 2946045630 Bacteria 8527308
156 3006498811 3006493962 Bacteria 8825450
157 8001789087 8001781756 Bacteria 9586736
158 8003861520 8003856774 Bacteria 7675274
159 8025416081 8025413630 Bacteria 7014048
160 8025537280 8025530807 Bacteria 8495698
161 8054165607 8054160619 Bacteria 7783213
162 8055071584 8055066027 Bacteria 9479577
163 8055176894 8055172936 Bacteria 9305943
164 Ga0307508_10048793
165 rootL2_10024997
166 Ga0070683_100001649
167 Ga0068869_100141606
168 Ga0070668_100010085
169 Ga0070674_100133374
170 Ga0070684_100001388
171 Ga0070665_100084802
172 Ga0070665_100385102
173 Ga0070664_100018316
174 Ga0068857_100142107
175 Ga0068858_100012892
176 Ga0081540_1030205
177 Ga0075428_100000806
178 Ga0075428_100035067
179 Ga0075430_100163961
180 Ga0075431_100005410
181 Ga0075429_100058898
182 Ga0114129_10024008
183 Ga0105238_10450960
184 Ga0157378_10289549
185 Ga0157372_10623567
186 Ga0157375_10432809
187 Ga0207661_10000804
188 Ga0207679_10007613
189 Ga0207668_10044988
190 Ga0207658_10069384
191 Ga0207677_10202527
192 Ga0207703_10020022
193 Ga0207641_10272380
194 Ga0207674_10162116
195 Ga0207675_100059767
196 Ga0268266_10080986
197 Ga0268266_10354065
198 Ga0268264_10279132
199 Ga0268264_10446487
200 Ga0307515_10000227
201 Ga0307515_10000526
202 Ga0307515_10008672
203 Ga0307515_10009039
204 Ga0307515_10019161
205 Ga0307515_10156168
206 Ga0307512_10026842
207 Ga0307512_10049466
208 Ga0307512_10069943
209 Ga0307513_10003329
210 Ga0307509_10007475
211 Ga0307509_10020270
212 Ga0307509_10061894
213 Ga0307509_10215941
214 Ga0307408_100086032
215 Ga0307508_10004010
216 Ga0307508_10018404
217 Ga0307508_10038449
218 Ga0307508_10046754
219 Ga0307508_10090078
220 Ga0307516_10001067
221 Ga0307516_10007120
222 Ga0307516_10007828
223 Ga0307516_10031263
224 Ga0307516_10055685
225 Ga0307516_10056673
226 Ga0307516_10254300
227 Ga0307405_10069334
228 Ga0307405_10149514
229 Ga0307413_10014751
230 Ga0307413_10076938
231 Ga0307413_10086303
232 Ga0307413_10303335
233 Ga0307518_10006155
234 Ga0307410_10362170
235 Ga0326468_10000617
236 Ga0307406_10009188
237 Ga0307407_10135913
238 Ga0307409_100013911
239 Ga0307409_100045552
240 Ga0307416_100006207
241 Ga0307416_100371747
242 Ga0307414_10377415
243 Ga0307415_100030122
244 Ga0307415_100034174
245 Ga0307415_100036245
246 Ga0307415_100058765
247 Ga0307415_100190150
248 Ga0307507_10031795
249 Ga0307507_10102622
250 Ga0307510_10148123
251 Ga0373940_0013172
252 Ga0373951_0000015
253 Ga0373941_0011871
254 Ga0373942_0000135
255 Ga0373942_0000572
256 Ga0373962_0001772
257 Ga0395905_0286240
258 Ga0395901_0006876
259 Ga0451833_1069406
260 Ga0466972_0061100
261 Ga0466970_0086524
262 Ga0466960_0016801
263 Ga0466960_0024066
264 Ga0466967_0219523
265 Ga0495639_0034835
266 Ga0495606_0000540
267 Ga0495606_0000544
268 Ga0495668_0000323
269 Ga0495668_0000362
270 Ga0495626_0000118
271 Ga0495626_0000186
272 Ga0496108_0000124
273 Ga0496123_0020527
274 Ga0501033_0152605
275 nmdc:mga05p37_23765_c1
276 nmdc:mga09592_15103_c1
277 nmdc:mga0qj67_6376_c1
278 nmdc:mga06r32_4533_c1
279 Ga0500644_0014175
280 Ga0500644_0032381
281 Ga0500646_0000113
282 Ga0500650_0142821
283 Ga0500652_066601
284 Ga0500600_0067248
285 2547411408
286 2554260901
287 2586060345
288 2643901949
289 2643944240
290 2644017172
291 2644173867
292 2644408093
293 2644431086
294 2644455464
295 2676484323
296 2753262744
297 2753263639
298 2784589722
299 2795792523
300 2804849539
301 2809590674
302 2819698839
303 2856745963
304 2862293792
305 2873153985
306 2873321804
307 2875397744
308 2884697220
309 2887481669
310 2887484774
311 2891398170
312 2891555281
313 2891566625
314 2895452729
315 2912727382
316 2915770583
317 2918508170
318 2946046783
319 3006498811
320 8001789087
321 8003861520
322 8025416081
323 8025537280
324 8054165607
325 8055071584
326 8055176894

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

5

64

0.98

PF03466

LysR_substrate

LysR substrate binding domain

90

294

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.9342 3 93
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9298 3 93
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9219 3 87
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.92 3 93
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9179 3 90
ID Description Score Start End Superfamily
af_P45463_8_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9637 6 86 1.10.10.10
af_P77171_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.962 2 82 1.10.10.10
af_P9WMF3_10_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9606 6 83 1.10.10.10
af_Q47005_1_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9559 3 88 1.10.10.10
af_Q2G0C6_1_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9512 3 83 1.10.10.10
ID Description Score Start End GO Terms
AF-W1XG19-F1-model_v4 HTH-type transcriptional regulator abgR 0.9714 2 81 GO:0003700
GO:0005829
AF-A0A833KNX1-F1-model_v4 deleted 0.9638 3 75
AF-A0A399P388-F1-model_v4 LysR family transcriptional regulator 0.9607 1 73 GO:0003700
AF-A0A6I5XAC4-F1-model_v4 LysR family transcriptional regulator 0.959 3 89 GO:0000976
GO:0003700
AF-A0A6N3U979-F1-model_v4 deleted 0.9319 3 75

Map