F240835

General Info

Members Datasets Scaffolds Average Seq Length
163 126 326 369

Family's Representative Sequence

Representative Sequence 3300005331|Ga0070670_100019459|Ga0070670_1000194592
Length 413
Sequence MRRTVGNCASVDGLRLQSDNQDTRPFNALAVSVPSFAGVKQESARRIVTIALEQLRRYAVARSLFRPTTLVRAIDKLGYVQADPIRAPARAQDLTLRHRVTDYRAGDLERRYPRLRLEEDFLVNYGFLPRAHSELMHPRTARHAWTRRRQSQADAVLAFVRERGAVHPREVDARFAHGRVTNWFGGSSNASTQLLDEMHYRGLLRVARREGGTRVYAARDPVAESPKDDATIAARLDALVDIVVNKYAPLPASSLGRLLSYLCGGVPQWRLRRAATLARAKRRLAHTKSNDEDWYWPEAEDPASRRWRPDDVVRLLAPFDPIVFDRRRFEIFWGWPYRFEAYVPPSKRKLGYYALPLLWRDEVVGWGNVAVRNGKLTCSLGYVTGRAPRGADFRKGLADELDRMRVFLGSRNS

Samples

Sample ID Description Type Environment
1 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
76 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
80 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
81 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
84 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
85 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
86 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
87 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
88 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
100 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
103 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
104 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
105 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
106 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
107 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
108 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
109 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
114 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
115 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
116 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
121 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
122 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
123 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
124 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.77
Metatranscriptomes 0.61
Isolates 0.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.23
Nodule 0
Rhizoplane 3.07
Rhizosphere 92.02
Stem 0
Stem Tuber 0
Unclassified 1.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100019459 3300005331 Bacteria 5827
2 Ga0070676_10018034 3300005328 Bacteria 3909
3 Ga0070676_10032372 3300005328 Bacteria 2995
4 Ga0070677_10002210 3300005333 Bacteria 6217
5 Ga0070677_10020644 3300005333 Bacteria 2403
6 Ga0068869_100133485 3300005334 Bacteria 1910
7 Ga0070682_100016822 3300005337 Bacteria 4256
8 Ga0068868_100155287 3300005338 Bacteria 1887
9 Ga0070660_100005516 3300005339 Bacteria 8762
10 Ga0070689_100000011 3300005340 Bacteria 218327
11 Ga0070669_100050177 3300005353 Bacteria 3048
12 Ga0070675_100011192 3300005354 Bacteria 7019
13 Ga0070675_100045257 3300005354 Bacteria 3601
14 Ga0070675_100062305 3300005354 Bacteria 3082
15 Ga0070674_100020604 3300005356 Bacteria 4217
16 Ga0070673_100316217 3300005364 Bacteria 1378
17 Ga0070659_100020527 3300005366 Bacteria 5020
18 Ga0070700_100017437 3300005441 Bacteria 4106
19 Ga0070678_100017576 3300005456 Bacteria 4611
20 Ga0070662_100001538 3300005457 Bacteria 14231
21 Ga0070662_100084305 3300005457 Bacteria 2373
22 Ga0068867_100001028 3300005459 Bacteria 19097
23 Ga0070699_100065061 3300005518 Bacteria 3163
24 Ga0068853_100028890 3300005539 Bacteria 4668
25 Ga0070672_100055927 3300005543 Bacteria 3093
26 Ga0070696_100001766 3300005546 Bacteria 14180
27 Ga0070665_100099755 3300005548 Bacteria 2908
28 Ga0068855_100002996 3300005563 Bacteria 20644
29 Ga0068855_100004182 3300005563 Bacteria 17611
30 Ga0068855_100017142 3300005563 Bacteria 8713
31 Ga0070664_100000641 3300005564 Bacteria 26808
32 Ga0068856_100000746 3300005614 Bacteria 35249
33 Ga0068852_100322697 3300005616 Bacteria 1500
34 Ga0068859_100016451 3300005617 Bacteria 7429
35 Ga0068859_100020352 3300005617 Bacteria 6661
36 Ga0068861_100010567 3300005719 Bacteria 6409
37 Ga0068861_100011954 3300005719 Bacteria 6046
38 Ga0068861_100097710 3300005719 Bacteria 2330
39 Ga0068870_10019337 3300005840 Bacteria 3303
40 Ga0068860_100019270 3300005843 Bacteria 6623
41 Ga0068860_100093061 3300005843 Bacteria 2873
42 Ga0068860_100186904 3300005843 Bacteria 2004
43 Ga0068862_100009603 3300005844 Bacteria 7997
44 Ga0068862_100040381 3300005844 Bacteria 3966
45 Ga0097621_100057642 3300006237 Bacteria 3177
46 Ga0097621_100189661 3300006237 Bacteria 1780
47 Ga0075370_10006176 3300006353 Bacteria 6009
48 Ga0068865_100215611 3300006881 Bacteria 1498
49 Ga0097620_100016451 3300006931 Bacteria 7429
50 Ga0097620_100020352 3300006931 Bacteria 6661
51 Ga0099795_10000072 3300007788 Bacteria 17833
52 Ga0105240_10042219 3300009093 Bacteria 5813
53 Ga0111539_10322629 3300009094 Bacteria 1797
54 Ga0105248_10149840 3300009177 Bacteria 2632
55 Ga0105248_10290842 3300009177 Bacteria 1840
56 Ga0105238_10002952 3300009551 Bacteria 16968
57 Ga0105249_10078551 3300009553 Bacteria 3062
58 Ga0099796_10000181 3300010159 Bacteria 9554
59 Ga0157373_10004302 3300013100 Bacteria 10723
60 Ga0157371_10001640 3300013102 Bacteria 22899
61 Ga0157369_10039334 3300013105 Bacteria 5168
62 Ga0157372_10001849 3300013307 Bacteria 22929
63 Ga0157375_10036658 3300013308 Bacteria 4693
64 Ga0163163_10248350 3300014325 Bacteria 1830
65 Ga0163163_10339552 3300014325 Bacteria 1557
66 Ga0157379_10156036 3300014968 Bacteria 2059
67 Ga0157379_10163802 3300014968 Bacteria 2007
68 Ga0157379_10384732 3300014968 Bacteria 1288
69 Ga0157376_10040182 3300014969 Bacteria 3822
70 Ga0207682_10011788 3300025893 Bacteria 3415
71 Ga0207645_10017360 3300025907 Bacteria 4750
72 Ga0207645_10053973 3300025907 Bacteria 2567
73 Ga0207645_10061995 3300025907 Bacteria 2389
74 Ga0207643_10004878 3300025908 Bacteria 7185
75 Ga0207695_10153810 3300025913 Bacteria 2237
76 Ga0207695_10263481 3300025913 Unclassified 1621
77 Ga0207657_10008928 3300025919 Bacteria 10128
78 Ga0207681_10030366 3300025923 Bacteria 3523
79 Ga0207650_10045828 3300025925 Bacteria 3218
80 Ga0207659_10051276 3300025926 Bacteria 2934
81 Ga0207644_10018369 3300025931 Bacteria 4729
82 Ga0207690_10003125 3300025932 Bacteria 9971
83 Ga0207706_10000149 3300025933 Bacteria 76532
84 Ga0207691_10008965 3300025940 Bacteria 9596
85 Ga0207691_10039802 3300025940 Bacteria 4348
86 Ga0207689_10213001 3300025942 Bacteria 1596
87 Ga0207679_10001327 3300025945 Bacteria 15634
88 Ga0207667_10006496 3300025949 Bacteria 14142
89 Ga0207667_10015496 3300025949 Bacteria 8654
90 Ga0207640_10112430 3300025981 Bacteria 1934
91 Ga0207658_10036211 3300025986 Bacteria 3538
92 Ga0207639_10008985 3300026041 Bacteria 6879
93 Ga0207639_10076560 3300026041 Bacteria 2635
94 Ga0207641_10165393 3300026088 Bacteria 2014
95 Ga0207648_10003267 3300026089 Bacteria 17044
96 Ga0207648_10106664 3300026089 Bacteria 2458
97 Ga0207675_100016398 3300026118 Bacteria 6917
98 Ga0207675_100023212 3300026118 Bacteria 5769
99 Ga0207675_100029519 3300026118 Bacteria 5109
100 Ga0207683_10034601 3300026121 Bacteria 4391
101 Ga0207683_10162965 3300026121 Bacteria 2017
102 Ga0209983_1002324 3300027665 Bacteria 4171
103 Ga0209974_10029901 3300027876 Bacteria 1805
104 Ga0265354_1005654 3300028016 Bacteria 1261
105 Ga0268265_10013969 3300028380 Bacteria 5468
106 Ga0268264_10019910 3300028381 Bacteria 5482
107 Ga0265770_1001394 3300030878 Bacteria 3325
108 Ga0265328_10010229 3300031239 Bacteria 3783
109 Ga0307513_10083141 3300031456 Bacteria 3293
110 Ga0307509_10015349 3300031507 Bacteria 8940
111 Ga0307408_100001948 3300031548 Bacteria 14956
112 Ga0307514_10000369 3300031649 Bacteria 102951
113 Ga0316578_10026939 3300031728 Bacteria 3245
114 Ga0307516_10000081 3300031730 Bacteria 105223
115 Ga0307516_10017140 3300031730 Bacteria 7562
116 Ga0307405_10004896 3300031731 Bacteria 6393
117 Ga0307413_10287944 3300031824 Bacteria 1239
118 Ga0307410_10042795 3300031852 Bacteria 2996
119 Ga0307410_10053523 3300031852 Bacteria 2732
120 Ga0307406_10001646 3300031901 Bacteria 12279
121 Ga0307412_10009262 3300031911 Bacteria 5644
122 Ga0307409_100010803 3300031995 Bacteria 5707
123 Ga0307411_10003462 3300032005 Bacteria 7331
124 Ga0307411_10038455 3300032005 Bacteria 3018
125 Ga0316574_0074330 3300035398 Unclassified 2150
126 Ga0316584_0219114 3300036712 Bacteria 1399
127 Ga0373925_0003513 3300037068 Bacteria 12109
128 Ga0395900_0000482 3300037418 Bacteria 56524
129 Ga0395898_0007442 3300037466 Bacteria 11622
130 Ga0395905_0004633 3300037471 Bacteria 14224
131 Ga0451797_1139747 3300041453 Bacteria 2377
132 Ga0451807_1429168 3300041486 Bacteria 3703
133 Ga0451577_0030026 3300042876 Bacteria 4911
134 Ga0451577_0144848 3300042876 Bacteria 2136
135 Ga0466969_0000018 3300044656 Bacteria 102911
136 Ga0466965_0016895 3300044683 Bacteria 3480
137 Ga0466966_0042212 3300044684 Bacteria 2929
138 Ga0466971_0004878 3300044719 Bacteria 5802
139 Ga0466970_0071902 3300044765 Bacteria 1861
140 Ga0466970_0079080 3300044765 Bacteria 1775
141 Ga0466959_0004389 3300045049 Bacteria 9437
142 Ga0495638_0001638 3300046460 Bacteria 19904
143 Ga0495638_0063113 3300046460 Bacteria 2285
144 Ga0495616_0010668 3300046513 Bacteria 5308
145 Ga0495625_0010393 3300046660 Bacteria 7707
146 Ga0495625_0038128 3300046660 Bacteria 3520
147 Ga0496100_0055975 3300048903 Bacteria 2579
148 Ga0496102_0107743 3300048905 Bacteria 2594
149 Ga0496106_0000594 3300048909 Bacteria 25897
150 Ga0501068_0000659 3300049584 Bacteria 17770
151 Ga0501069_0021644 3300049585 Bacteria 3493
152 Ga0501070_0278144 3300049586 Bacteria 1366
153 Ga0501071_0004008 3300049587 Bacteria 9296
154 Ga0501074_0000961 3300049590 Bacteria 18637
155 Ga0501076_0009865 3300049592 Bacteria 7059
156 Ga0501076_0190026 3300049592 Bacteria 1676
157 Ga0501079_0002046 3300049741 Bacteria 14453
158 Ga0501080_0011402 3300049742 Bacteria 8141
159 nmdc:mga0k408_32668_c1 3300050493 Bacteria 2972
160 Ga0501084_0041542 3300054114 Bacteria 3847
161 Ga0466962_0017762 3300061719 Bacteria 3424
162 Ga0530510_0064498 3300061734 Bacteria 2653
163 2919707298 2919704043 Bacteria 5560311
164 Ga0070670_100019459
165 Ga0070676_10018034
166 Ga0070676_10032372
167 Ga0070677_10002210
168 Ga0070677_10020644
169 Ga0068869_100133485
170 Ga0070682_100016822
171 Ga0068868_100155287
172 Ga0070660_100005516
173 Ga0070689_100000011
174 Ga0070669_100050177
175 Ga0070675_100011192
176 Ga0070675_100045257
177 Ga0070675_100062305
178 Ga0070674_100020604
179 Ga0070673_100316217
180 Ga0070659_100020527
181 Ga0070700_100017437
182 Ga0070678_100017576
183 Ga0070662_100001538
184 Ga0070662_100084305
185 Ga0068867_100001028
186 Ga0070699_100065061
187 Ga0068853_100028890
188 Ga0070672_100055927
189 Ga0070696_100001766
190 Ga0070665_100099755
191 Ga0068855_100002996
192 Ga0068855_100004182
193 Ga0068855_100017142
194 Ga0070664_100000641
195 Ga0068856_100000746
196 Ga0068852_100322697
197 Ga0068859_100016451
198 Ga0068859_100020352
199 Ga0068861_100010567
200 Ga0068861_100011954
201 Ga0068861_100097710
202 Ga0068870_10019337
203 Ga0068860_100019270
204 Ga0068860_100093061
205 Ga0068860_100186904
206 Ga0068862_100009603
207 Ga0068862_100040381
208 Ga0097621_100057642
209 Ga0097621_100189661
210 Ga0075370_10006176
211 Ga0068865_100215611
212 Ga0097620_100016451
213 Ga0097620_100020352
214 Ga0099795_10000072
215 Ga0105240_10042219
216 Ga0111539_10322629
217 Ga0105248_10149840
218 Ga0105248_10290842
219 Ga0105238_10002952
220 Ga0105249_10078551
221 Ga0099796_10000181
222 Ga0157373_10004302
223 Ga0157371_10001640
224 Ga0157369_10039334
225 Ga0157372_10001849
226 Ga0157375_10036658
227 Ga0163163_10248350
228 Ga0163163_10339552
229 Ga0157379_10156036
230 Ga0157379_10163802
231 Ga0157379_10384732
232 Ga0157376_10040182
233 Ga0207682_10011788
234 Ga0207645_10017360
235 Ga0207645_10053973
236 Ga0207645_10061995
237 Ga0207643_10004878
238 Ga0207695_10153810
239 Ga0207695_10263481
240 Ga0207657_10008928
241 Ga0207681_10030366
242 Ga0207650_10045828
243 Ga0207659_10051276
244 Ga0207644_10018369
245 Ga0207690_10003125
246 Ga0207706_10000149
247 Ga0207691_10008965
248 Ga0207691_10039802
249 Ga0207689_10213001
250 Ga0207679_10001327
251 Ga0207667_10006496
252 Ga0207667_10015496
253 Ga0207640_10112430
254 Ga0207658_10036211
255 Ga0207639_10008985
256 Ga0207639_10076560
257 Ga0207641_10165393
258 Ga0207648_10003267
259 Ga0207648_10106664
260 Ga0207675_100016398
261 Ga0207675_100023212
262 Ga0207675_100029519
263 Ga0207683_10034601
264 Ga0207683_10162965
265 Ga0209983_1002324
266 Ga0209974_10029901
267 Ga0265354_1005654
268 Ga0268265_10013969
269 Ga0268264_10019910
270 Ga0265770_1001394
271 Ga0265328_10010229
272 Ga0307513_10083141
273 Ga0307509_10015349
274 Ga0307408_100001948
275 Ga0307514_10000369
276 Ga0316578_10026939
277 Ga0307516_10000081
278 Ga0307516_10017140
279 Ga0307405_10004896
280 Ga0307413_10287944
281 Ga0307410_10042795
282 Ga0307410_10053523
283 Ga0307406_10001646
284 Ga0307412_10009262
285 Ga0307409_100010803
286 Ga0307411_10003462
287 Ga0307411_10038455
288 Ga0316574_0074330
289 Ga0316584_0219114
290 Ga0373925_0003513
291 Ga0395900_0000482
292 Ga0395898_0007442
293 Ga0395905_0004633
294 Ga0451797_1139747
295 Ga0451807_1429168
296 Ga0451577_0030026
297 Ga0451577_0144848
298 Ga0466969_0000018
299 Ga0466965_0016895
300 Ga0466966_0042212
301 Ga0466971_0004878
302 Ga0466970_0071902
303 Ga0466970_0079080
304 Ga0466959_0004389
305 Ga0495638_0001638
306 Ga0495638_0063113
307 Ga0495616_0010668
308 Ga0495625_0010393
309 Ga0495625_0038128
310 Ga0496100_0055975
311 Ga0496102_0107743
312 Ga0496106_0000594
313 Ga0501068_0000659
314 Ga0501069_0021644
315 Ga0501070_0278144
316 Ga0501071_0004008
317 Ga0501074_0000961
318 Ga0501076_0009865
319 Ga0501076_0190026
320 Ga0501079_0002046
321 Ga0501080_0011402
322 nmdc:mga0k408_32668_c1
323 Ga0501084_0041542
324 Ga0466962_0017762
325 Ga0530510_0064498
326 2919707298

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06224

AlkZ-like

DNA glycosylase AlkZ-like

74

407

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jap-assembly1.cif.gz_Z structure of a partial yeast 48s preinitiation complex in closed conformation 0.7264 106 175
5f7q-assembly1.cif.gz_J rok repressor lmo0178 from listeria monocytogenes bound to operator 0.6934 98 174
7qiz-assembly1.cif.gz_ZA specific features and methylation sites of a plant 80s ribosome 0.6776 99 177
7o7y-assembly1.cif.gz_Ay rabbit 80s ribosome stalled close to the mutated sars-cov-2 slippery site by a pseudoknot (high resolution) 0.6717 100 175
6woo-assembly1.cif.gz_ZZ cryoem structure of yeast 80s ribosome with met-trnaimet, eif5b, and gdp 0.6626 106 175
ID Description Score Start End Superfamily
af_Q59048_168_225_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8523 106 174 1.10.10.10
af_P39360_5_75_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8522 101 173 1.10.10.10
af_Q58793_245_317_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8171 106 173 1.10.10.10
af_Q59048_168_225_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8129 106 174 1.10.10.10
af_Q58948_3_81_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8119 106 175 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1M7NLG2-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9802 4 364
AF-A0A7V7WRG1-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9765 1 340
AF-A0A7V7WH40-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9735 1 308
AF-A0A1M7NLG2-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9723 4 364
AF-A0A519I1S4-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9717 1 252

Map