F240646

General Info

Members Datasets Scaffolds Average Seq Length
163 105 163 350

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10043601|rootH2_100436012
Length 391
Sequence MNATGSDLQIGAVRLDGNLILAPLAGYTNLPFRLVIRELGREALADHGVGGVGLCVTDLVNARSLVERRDKALQLIASRPEDRPLSVQLFGSVVEEMVEAAKFVEQQGAALIDINMGCPVRKVCKVGGGSAMMTETARTAALVGAMVKAVGIPVTCKMRLGWDDDNLTAPELARALEEVGAAAIMVHGRTRAQGFDGTVNLPGIRAVVEAVKAIPVIGNGDVTTPQAAKTMLEETGCAGVSIGRGAFYDPWLFSRTRAFLATGAMPPEVGFAERVRVMTRHLDLMVEVFGEAHGCRLFRKVAPWYAKRFGPASFFNKRVVRLENRAQYDAILEEYFGWRAQFLEADGATLLPQYAPGAMAENFSRIPLGEGNPESAARAAIPVPSGPQEWW

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
38 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
39 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
53 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
60 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
61 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
62 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
63 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
64 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
65 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
68 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
69 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
75 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
84 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
85 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
86 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
87 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
88 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
93 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
94 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
95 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
103 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
104 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
105 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 99.39
Stem 0
Stem Tuber 0
Unclassified 0.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10043601 3300003320 Bacteria 4732
2 Ga0065707_10110059 3300005295 Bacteria 2446
3 Ga0070670_100021753 3300005331 Bacteria 5516
4 Ga0070689_100006850 3300005340 Bacteria 7927
5 Ga0070689_100012863 3300005340 Bacteria 6042
6 Ga0070689_100033069 3300005340 Bacteria 3938
7 Ga0070689_100059940 3300005340 Bacteria 2958
8 Ga0070687_100086337 3300005343 Bacteria 1724
9 Ga0070692_10149968 3300005345 Bacteria 1327
10 Ga0070675_100007752 3300005354 Bacteria 8311
11 Ga0070688_100003672 3300005365 Bacteria 7927
12 Ga0070688_100009959 3300005365 Bacteria 5223
13 Ga0070688_100010843 3300005365 Bacteria 5042
14 Ga0070701_10021071 3300005438 Bacteria 3105
15 Ga0070705_100125562 3300005440 Bacteria 1665
16 Ga0070700_100033472 3300005441 Bacteria 3095
17 Ga0070700_100068244 3300005441 Unclassified 2260
18 Ga0070694_100143880 3300005444 Bacteria 1735
19 Ga0070708_100305579 3300005445 Bacteria 1498
20 Ga0070685_10009681 3300005466 Bacteria 4989
21 Ga0070707_100018618 3300005468 Bacteria 6535
22 Ga0070707_100059362 3300005468 Bacteria 3670
23 Ga0070686_100058372 3300005544 Bacteria 2482
24 Ga0070695_100033062 3300005545 Bacteria 3235
25 Ga0070704_100012972 3300005549 Bacteria 5156
26 Ga0070704_100013366 3300005549 Bacteria 5093
27 Ga0070704_100150856 3300005549 Bacteria 1827
28 Ga0068859_100065869 3300005617 Bacteria 3656
29 Ga0068861_100046168 3300005719 Bacteria 3283
30 Ga0068863_100018365 3300005841 Bacteria 6693
31 Ga0068863_100025473 3300005841 Bacteria 5641
32 Ga0068858_100210036 3300005842 Bacteria 1842
33 Ga0068860_100185855 3300005843 Bacteria 2010
34 Ga0070715_10068135 3300006163 Bacteria 1582
35 Ga0068871_100262105 3300006358 Bacteria 1508
36 Ga0075428_100034349 3300006844 Bacteria 5594
37 Ga0075428_100089969 3300006844 Bacteria 3348
38 Ga0075428_100300444 3300006844 Bacteria 1726
39 Ga0075430_100032731 3300006846 Bacteria 4412
40 Ga0075433_10017951 3300006852 Bacteria 5870
41 Ga0075434_100056836 3300006871 Bacteria 3889
42 Ga0075429_100019643 3300006880 Bacteria 5857
43 Ga0097620_100065870 3300006931 Bacteria 3656
44 Ga0075435_100002561 3300007076 Bacteria 12120
45 Ga0075435_100119182 3300007076 Bacteria 2201
46 Ga0111539_10011470 3300009094 Bacteria 11123
47 Ga0111539_10134914 3300009094 Bacteria 2890
48 Ga0114129_10108174 3300009147 Bacteria 3839
49 Ga0105248_10559576 3300009177 Bacteria 1290
50 Ga0157375_10224494 3300013308 Bacteria 2037
51 Ga0157377_10069156 3300014745 Unclassified 2037
52 Ga0157379_10221794 3300014968 Bacteria 1713
53 Ga0207653_10031630 3300025885 Bacteria 1710
54 Ga0207685_10027044 3300025905 Bacteria 2003
55 Ga0207684_10084395 3300025910 Bacteria 2705
56 Ga0207662_10003553 3300025918 Bacteria 8041
57 Ga0207646_10018431 3300025922 Bacteria 6512
58 Ga0207659_10019931 3300025926 Bacteria 4424
59 Ga0207670_10001076 3300025936 Bacteria 14376
60 Ga0207651_10127904 3300025960 Bacteria 1939
61 Ga0207641_10022987 3300026088 Bacteria 5136
62 Ga0207641_10027084 3300026088 Bacteria 4733
63 Ga0207676_10078977 3300026095 Bacteria 2667
64 Ga0207675_100109205 3300026118 Bacteria 2610
65 Ga0207675_100287697 3300026118 Bacteria 1598
66 Ga0268264_10378803 3300028381 Bacteria 1354
67 Ga0265327_10090408 3300031251 Bacteria 1494
68 Ga0265316_10015066 3300031344 Bacteria 6777
69 Ga0265316_10040877 3300031344 Bacteria 3716
70 Ga0307408_100144975 3300031548 Bacteria 1868
71 Ga0316576_10002148 3300031727 Bacteria 11110
72 Ga0307413_10112385 3300031824 Bacteria 1826
73 Ga0307410_10049122 3300031852 Bacteria 2830
74 Ga0307409_100015909 3300031995 Bacteria 4956
75 Ga0307414_10000911 3300032004 Bacteria 15167
76 Ga0373926_0005450 3300035083 Unclassified 4196
77 Ga0373934_0006324 3300035086 Bacteria 4391
78 Ga0373945_0008215 3300035116 Bacteria 3395
79 Ga0373953_0003469 3300035117 Bacteria 4916
80 Ga0373953_0067985 3300035117 Bacteria 1466
81 Ga0373954_0029026 3300035118 Bacteria 2546
82 Ga0373956_0002677 3300035119 Bacteria 7206
83 Ga0373957_0002615 3300035120 Bacteria 5169
84 Ga0373943_0025876 3300035170 Unclassified 2745
85 Ga0373955_0012744 3300035172 Bacteria 4049
86 Ga0373962_0053575 3300035242 Bacteria 1168
87 Ga0373935_0009286 3300035692 Bacteria 5888
88 Ga0373927_0021381 3300035695 Bacteria 4240
89 Ga0373933_0035591 3300035724 Bacteria 2908
90 Ga0373947_0006335 3300035725 Bacteria 6877
91 Ga0373937_0010024 3300036401 Bacteria 8263
92 Ga0373937_0016736 3300036401 Bacteria 6517
93 Ga0373937_0173823 3300036401 Bacteria 2021
94 Ga0316582_0019968 3300036647 Unclassified 3932
95 Ga0316582_0192307 3300036647 Unclassified 1390
96 Ga0373925_0052664 3300037068 Bacteria 3041
97 Ga0395900_0014450 3300037418 Bacteria 8058
98 Ga0395905_0059310 3300037471 Bacteria 3577
99 Ga0395901_0071467 3300038443 Bacteria 3616
100 Ga0451577_0001191 3300042876 Bacteria 36479
101 Ga0451577_0001450 3300042876 Bacteria 31546
102 Ga0451577_0016452 3300042876 Bacteria 6852
103 Ga0451577_0110755 3300042876 Bacteria 2456
104 Ga0453683_0000001 3300044673 Bacteria 1384965
105 Ga0453683_0000243 3300044673 Bacteria 72784
106 Ga0453683_0001067 3300044673 Bacteria 25459
107 Ga0453683_0003489 3300044673 Bacteria 11574
108 Ga0453683_0007386 3300044673 Bacteria 7459
109 Ga0453684_0000417 3300044712 Bacteria 173793
110 Ga0453684_0000866 3300044712 Bacteria 101700
111 Ga0453684_0001210 3300044712 Bacteria 79441
112 Ga0453684_0001656 3300044712 Bacteria 60451
113 Ga0453684_0004898 3300044712 Bacteria 27405
114 Ga0453684_0008792 3300044712 Bacteria 17916
115 Ga0453684_0012049 3300044712 Bacteria 14368
116 Ga0453684_0015487 3300044712 Bacteria 12048
117 Ga0453684_0017673 3300044712 Bacteria 11025
118 Ga0453684_0027625 3300044712 Bacteria 8127
119 Ga0453684_0100470 3300044712 Bacteria 3540
120 Ga0453684_0132244 3300044712 Bacteria 2992
121 Ga0453684_0226901 3300044712 Bacteria 2159
122 Ga0453684_0589191 3300044712 Bacteria 1220
123 Ga0451576_0000121 3300045051 Bacteria 199083
124 Ga0451576_0007928 3300045051 Bacteria 12567
125 Ga0451576_0026247 3300045051 Bacteria 6266
126 Ga0451576_0044466 3300045051 Bacteria 4681
127 Ga0451576_0082565 3300045051 Bacteria 3342
128 Ga0451576_0127815 3300045051 Bacteria 2648
129 Ga0451576_0156772 3300045051 Bacteria 2375
130 Ga0451576_0183142 3300045051 Unclassified 2187
131 Ga0451576_0295308 3300045051 Bacteria 1694
132 Ga0451576_0658489 3300045051 Bacteria 1100
133 Ga0495592_0073367 3300046454 Bacteria 2488
134 Ga0495603_0038255 3300046455 Bacteria 2878
135 Ga0495651_0031674 3300046462 Bacteria 4123
136 Ga0495608_0002756 3300046511 Bacteria 12627
137 Ga0495618_0011243 3300046514 Bacteria 5423
138 Ga0495628_0037792 3300046516 Bacteria 3869
139 Ga0495628_0043046 3300046516 Bacteria 3599
140 Ga0495628_0152489 3300046516 Bacteria 1759
141 Ga0495630_0034780 3300046517 Unclassified 3764
142 Ga0495630_0108785 3300046517 Bacteria 2100
143 Ga0495666_0066115 3300046526 Unclassified 1724
144 Ga0495652_0299261 3300046529 Bacteria 1170
145 Ga0495657_0107484 3300046675 Bacteria 1770
146 Ga0495658_0098136 3300046683 Bacteria 1745
147 Ga0495676_0119730 3300047321 Unclassified 1917
148 Ga0495675_0012172 3300047444 Bacteria 5412
149 Ga0501034_0453249 3300049571 Bacteria 1200
150 Ga0501073_0163090 3300049589 Bacteria 1544
151 nmdc:mga09592_321524_c1 3300050508 Bacteria 1340
152 nmdc:mga09592_522_c1 3300050508 Bacteria 29119
153 nmdc:mga0qj67_65104_c2 3300050509 Bacteria 1721
154 nmdc:mga06r32_482549_c1 3300050510 Bacteria 1217
155 nmdc:mga08y16_108304_c1 3300050511 Bacteria 2892
156 nmdc:mga08y16_81516_c1 3300050511 Bacteria 3373
157 nmdc:mga0n895_45291_c1 3300050512 Bacteria 4293
158 nmdc:mga0n895_478647_c1 3300050512 Bacteria 1256
159 nmdc:mga0rr50_4671_c1 3300050513 Bacteria 8073
160 nmdc:mga0a205_121556_c1 3300050515 Bacteria 2510
161 nmdc:mga0a205_28973_c1 3300050515 Bacteria 5297
162 nmdc:mga0a205_320932_c1 3300050515 Bacteria 1420
163 Ga0495595_0004839 3300053084 Bacteria 5424

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0183142 Ga0451576_0183142_16_864 282
2 3300036401 Ga0373937_0173823 Ga0373937_0173823_23_940 298
3 3300036647 Ga0316582_0192307 Ga0316582_0192307_225_1121 298
4 3300044673 Ga0453683_0000243 Ga0453683_0000243_21843_22763 306
5 3300044712 Ga0453684_0001656 Ga0453684_0001656_44204_45127 307
6 3300044712 Ga0453684_0012049 Ga0453684_0012049_10813_11736 307
7 3300005549 Ga0070704_100150856 Ga0070704_1001508562 314
8 3300044673 Ga0453683_0007386 Ga0453683_0007386_4335_5297 320
9 3300042876 Ga0451577_0001450 Ga0451577_0001450_27026_27991 321
10 3300044712 Ga0453684_0001210 Ga0453684_0001210_27032_27997 321
11 3300044712 Ga0453684_0589191 Ga0453684_0589191_137_1111 324
12 3300045051 Ga0451576_0295308 Ga0451576_0295308_431_1405 324
13 3300031727 Ga0316576_10002148 Ga0316576_100021483 325
14 3300036647 Ga0316582_0019968 Ga0316582_0019968_302_1279 325
15 3300050510 nmdc:mga06r32_482549_c1 nmdc:mga06r32_482549_c1_11_1000 325
16 3300005295 Ga0065707_10110059 Ga0065707_101100592 326
17 3300031344 Ga0265316_10015066 Ga0265316_100150666 326
18 3300037418 Ga0395900_0014450 Ga0395900_0014450_5027_6100 326
19 3300038443 Ga0395901_0071467 Ga0395901_0071467_454_1527 326
20 3300042876 Ga0451577_0001191 Ga0451577_0001191_6735_7715 326
21 3300042876 Ga0451577_0016452 Ga0451577_0016452_3578_4558 326
22 3300044673 Ga0453683_0000001 Ga0453683_0000001_1261343_1262323 326
23 3300044673 Ga0453683_0001067 Ga0453683_0001067_6610_7590 326
24 3300044673 Ga0453683_0003489 Ga0453683_0003489_7421_8401 326
25 3300044712 Ga0453684_0000417 Ga0453684_0000417_54552_55532 326
26 3300044712 Ga0453684_0004898 Ga0453684_0004898_19547_20527 326
27 3300044712 Ga0453684_0226901 Ga0453684_0226901_988_1968 326
28 3300045051 Ga0451576_0026247 Ga0451576_0026247_3861_4841 326
29 3300044712 Ga0453684_0008792 Ga0453684_0008792_11439_12422 327
30 3300044712 Ga0453684_0027625 Ga0453684_0027625_4179_5162 327
31 3300044712 Ga0453684_0100470 Ga0453684_0100470_866_1849 327
32 3300045051 Ga0451576_0007928 Ga0451576_0007928_8461_9444 327
33 3300031548 Ga0307408_100144975 Ga0307408_1001449753 328
34 3300031824 Ga0307413_10112385 Ga0307413_101123852 328
35 3300031852 Ga0307410_10049122 Ga0307410_100491222 328
36 3300031995 Ga0307409_100015909 Ga0307409_1000159093 328
37 3300044712 Ga0453684_0015487 Ga0453684_0015487_8116_9102 328
38 3300044712 Ga0453684_0132244 Ga0453684_0132244_1363_2349 328
39 3300031251 Ga0265327_10090408 Ga0265327_100904082 329
40 3300005445 Ga0070708_100305579 Ga0070708_1003055792 333
41 3300046455 Ga0495603_0038255 Ga0495603_0038255_1582_2634 333
42 3300036401 Ga0373937_0010024 Ga0373937_0010024_2858_3874 334
43 3300044712 Ga0453684_0017673 Ga0453684_0017673_1524_2528 334
44 3300045051 Ga0451576_0000121 Ga0451576_0000121_192970_193974 334
45 3300045051 Ga0451576_0658489 Ga0451576_0658489_29_1033 334
46 3300046517 Ga0495630_0108785 Ga0495630_0108785_219_1235 334
47 3300005468 Ga0070707_100059362 Ga0070707_1000593622 335
48 3300025910 Ga0207684_10084395 Ga0207684_100843952 335
49 3300032004 Ga0307414_10000911 Ga0307414_1000091114 336
50 3300046529 Ga0495652_0299261 Ga0495652_0299261_96_1121 337
51 3300035116 Ga0373945_0008215 Ga0373945_0008215_1379_2407 338
52 3300005843 Ga0068860_100185855 Ga0068860_1001858552 339
53 3300028381 Ga0268264_10378803 Ga0268264_103788032 339
54 3300050515 nmdc:mga0a205_320932_c1 nmdc:mga0a205_320932_c1_96_1127 339
55 3300005331 Ga0070670_100021753 Ga0070670_1000217535 342
56 3300035117 Ga0373953_0067985 Ga0373953_0067985_378_1418 342
57 3300006844 Ga0075428_100034349 Ga0075428_1000343495 343
58 3300045051 Ga0451576_0044466 Ga0451576_0044466_2105_3148 343
59 3300050509 nmdc:mga0qj67_65104_c2 nmdc:mga0qj67_65104_c2_646_1689 343
60 3300005468 Ga0070707_100018618 Ga0070707_1000186182 344
61 3300005545 Ga0070695_100033062 Ga0070695_1000330622 344
62 3300006846 Ga0075430_100032731 Ga0075430_1000327313 344
63 3300009147 Ga0114129_10108174 Ga0114129_101081742 344
64 3300025922 Ga0207646_10018431 Ga0207646_100184312 344
65 3300045051 Ga0451576_0082565 Ga0451576_0082565_1719_2765 344
66 3300045051 Ga0451576_0127815 Ga0451576_0127815_22_1068 344
67 3300050508 nmdc:mga09592_321524_c1 nmdc:mga09592_321524_c1_238_1284 344
68 3300045051 Ga0451576_0156772 Ga0451576_0156772_1142_2191 345
69 3300046514 Ga0495618_0011243 Ga0495618_0011243_1328_2377 345
70 3300005841 Ga0068863_100018365 Ga0068863_1000183655 346
71 3300006358 Ga0068871_100262105 Ga0068871_1002621052 346
72 3300006844 Ga0075428_100300444 Ga0075428_1003004442 346
73 3300009094 Ga0111539_10011470 Ga0111539_100114706 346
74 3300009177 Ga0105248_10559576 Ga0105248_105595761 346
75 3300014968 Ga0157379_10221794 Ga0157379_102217942 346
76 3300026088 Ga0207641_10027084 Ga0207641_100270844 346
77 3300005343 Ga0070687_100086337 Ga0070687_1000863371 347
78 3300005365 Ga0070688_100009959 Ga0070688_1000099594 347
79 3300005466 Ga0070685_10009681 Ga0070685_100096813 347
80 3300005544 Ga0070686_100058372 Ga0070686_1000583723 347
81 3300005549 Ga0070704_100012972 Ga0070704_1000129721 347
82 3300005842 Ga0068858_100210036 Ga0068858_1002100362 347
83 3300006852 Ga0075433_10017951 Ga0075433_100179512 347
84 3300006871 Ga0075434_100056836 Ga0075434_1000568364 347
85 3300007076 Ga0075435_100002561 Ga0075435_1000025614 347
86 3300007076 Ga0075435_100119182 Ga0075435_1001191822 347
87 3300025885 Ga0207653_10031630 Ga0207653_100316302 347
88 3300025918 Ga0207662_10003553 Ga0207662_100035533 347
89 3300026095 Ga0207676_10078977 Ga0207676_100789772 347
90 3300035242 Ga0373962_0053575 Ga0373962_0053575_52_1107 347
91 3300046683 Ga0495658_0098136 Ga0495658_0098136_159_1214 347
92 3300050511 nmdc:mga08y16_108304_c1 nmdc:mga08y16_108304_c1_405_1460 347
93 3300050512 nmdc:mga0n895_45291_c1 nmdc:mga0n895_45291_c1_1847_2902 347
94 3300050513 nmdc:mga0rr50_4671_c1 nmdc:mga0rr50_4671_c1_6042_7097 347
95 3300050515 nmdc:mga0a205_121556_c1 nmdc:mga0a205_121556_c1_989_2044 347
96 3300050515 nmdc:mga0a205_28973_c1 nmdc:mga0a205_28973_c1_1910_2965 347
97 3300005340 Ga0070689_100012863 Ga0070689_1000128634 348
98 3300005340 Ga0070689_100033069 Ga0070689_1000330692 348
99 3300005345 Ga0070692_10149968 Ga0070692_101499682 348
100 3300005354 Ga0070675_100007752 Ga0070675_1000077523 348
101 3300005438 Ga0070701_10021071 Ga0070701_100210712 348
102 3300005441 Ga0070700_100033472 Ga0070700_1000334722 348
103 3300005441 Ga0070700_100068244 Ga0070700_1000682442 348
104 3300005617 Ga0068859_100065869 Ga0068859_1000658694 348
105 3300005719 Ga0068861_100046168 Ga0068861_1000461683 348
106 3300005841 Ga0068863_100025473 Ga0068863_1000254732 348
107 3300006931 Ga0097620_100065870 Ga0097620_1000658704 348
108 3300013308 Ga0157375_10224494 Ga0157375_102244942 348
109 3300014745 Ga0157377_10069156 Ga0157377_100691562 348
110 3300025926 Ga0207659_10019931 Ga0207659_100199312 348
111 3300026088 Ga0207641_10022987 Ga0207641_100229874 348
112 3300026118 Ga0207675_100109205 Ga0207675_1001092052 348
113 3300049571 Ga0501034_0453249 Ga0501034_0453249_25_1173 348
114 3300049589 Ga0501073_0163090 Ga0501073_0163090_359_1417 348
115 3300050512 nmdc:mga0n895_478647_c1 nmdc:mga0n895_478647_c1_47_1120 348
116 3300006844 Ga0075428_100089969 Ga0075428_1000899693 349
117 3300025960 Ga0207651_10127904 Ga0207651_101279043 349
118 3300035172 Ga0373955_0012744 Ga0373955_0012744_51_1136 349
119 3300006163 Ga0070715_10068135 Ga0070715_100681352 350
120 3300006880 Ga0075429_100019643 Ga0075429_1000196434 350
121 3300025905 Ga0207685_10027044 Ga0207685_100270443 350
122 3300050508 nmdc:mga09592_522_c1 nmdc:mga09592_522_c1_3290_4411 350
123 3300005340 Ga0070689_100059940 Ga0070689_1000599401 351
124 3300005365 Ga0070688_100010843 Ga0070688_1000108434 351
125 3300009094 Ga0111539_10134914 Ga0111539_101349143 351
126 3300035086 Ga0373934_0006324 Ga0373934_0006324_1251_2378 351
127 3300035117 Ga0373953_0003469 Ga0373953_0003469_918_2045 351
128 3300035118 Ga0373954_0029026 Ga0373954_0029026_1175_2302 351
129 3300035119 Ga0373956_0002677 Ga0373956_0002677_2769_3896 351
130 3300035120 Ga0373957_0002615 Ga0373957_0002615_1609_2736 351
131 3300035724 Ga0373933_0035591 Ga0373933_0035591_1436_2563 351
132 3300036401 Ga0373937_0016736 Ga0373937_0016736_2477_3604 351
133 3300042876 Ga0451577_0110755 Ga0451577_0110755_230_1420 351
134 3300046454 Ga0495592_0073367 Ga0495592_0073367_65_1192 351
135 3300046462 Ga0495651_0031674 Ga0495651_0031674_456_1583 351
136 3300046511 Ga0495608_0002756 Ga0495608_0002756_8623_9750 351
137 3300046516 Ga0495628_0037792 Ga0495628_0037792_1890_3002 351
138 3300046516 Ga0495628_0043046 Ga0495628_0043046_752_1864 351
139 3300046516 Ga0495628_0152489 Ga0495628_0152489_46_1173 351
140 3300046675 Ga0495657_0107484 Ga0495657_0107484_148_1275 351
141 3300047444 Ga0495675_0012172 Ga0495675_0012172_2918_4045 351
142 3300050511 nmdc:mga08y16_81516_c1 nmdc:mga08y16_81516_c1_1208_2344 351
143 3300053084 Ga0495595_0004839 Ga0495595_0004839_2414_3541 351
144 3300026118 Ga0207675_100287697 Ga0207675_1002876972 352
145 3300031344 Ga0265316_10040877 Ga0265316_100408773 352
146 3300005340 Ga0070689_100006850 Ga0070689_1000068504 354
147 3300005365 Ga0070688_100003672 Ga0070688_1000036725 354
148 3300025936 Ga0207670_10001076 Ga0207670_1000107611 354
149 3300005440 Ga0070705_100125562 Ga0070705_1001255622 359
150 3300005444 Ga0070694_100143880 Ga0070694_1001438802 360
151 3300005549 Ga0070704_100013366 Ga0070704_1000133663 360
152 3300035083 Ga0373926_0005450 Ga0373926_0005450_711_1814 367
153 3300035170 Ga0373943_0025876 Ga0373943_0025876_977_2080 367
154 3300035692 Ga0373935_0009286 Ga0373935_0009286_3559_4662 367
155 3300035695 Ga0373927_0021381 Ga0373927_0021381_72_1175 367
156 3300035725 Ga0373947_0006335 Ga0373947_0006335_828_1931 367
157 3300037068 Ga0373925_0052664 Ga0373925_0052664_194_1297 367
158 3300046517 Ga0495630_0034780 Ga0495630_0034780_2180_3283 367
159 3300046526 Ga0495666_0066115 Ga0495666_0066115_607_1710 367
160 3300047321 Ga0495676_0119730 Ga0495676_0119730_78_1181 367
161 3300037471 Ga0395905_0059310 Ga0395905_0059310_1485_2603 372
162 3300044712 Ga0453684_0000866 Ga0453684_0000866_44814_45992 374
163 3300003320 rootH2_10043601 rootH2_100436012 391

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01207

Dus

Dihydrouridine synthase (Dus)

20

338

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.9554 7 337
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9461 18 335
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.9342 7 337
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9252 18 335
4yco-assembly2.cif.gz_B e. coli dihydrouridine synthase c (dusc) in complex with trnaphe 0.8464 18 332
ID Description Score Start End Superfamily
af_P0ABT5_6_247_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9565 8 266 3.20.20.70
af_Q9VIS4_253_495_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9563 18 258 3.20.20.70
af_P0ABT5_6_247_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9527 8 266 3.20.20.70
af_Q54ES7_56_285_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.951 20 253 3.20.20.70
af_O74553_20_249_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9417 18 254 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A1Z9IC63-F1-model_v4 deleted 0.996 8 154
AF-A0A7V6BD64-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9913 8 266 GO:0003723
GO:0017150
GO:0050660
AF-A0A357V522-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9877 30 160 GO:0003723
GO:0017150
GO:0050660
AF-A0A2N2FPR8-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9849 19 245 GO:0003723
GO:0017150
GO:0050660
AF-A0A7V6BD64-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9834 8 266 GO:0003723
GO:0017150
GO:0050660

Feature Viewer

pLDDT pTM Quality
87.8 0.86 High
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Predicted Structure (AlphaFold2)

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