F234830

General Info

Members Datasets Scaffolds Average Seq Length
160 112 320 161

Family's Representative Sequence

Representative Sequence 3300026121|Ga0207683_10239130|Ga0207683_102391302
Length 177
Sequence MELVQQNRAWQHNKQNRMKAFITIAIASLALLTISCMENKSEIKATELQAIFPKGEKGPAENFTGSAWNTPLVANNSTYNTVIGNVYFEPGARSNWHIHPSGQILIVTDGVGYHQIKGQPRQTIRKGDIVKCPPNVLHWHGASPDTGMQQMYILPKTEKGIVTWLQKVTDDEYSNSK

Samples

Sample ID Description Type Environment
1 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
48 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
63 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
64 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
65 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
76 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
77 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
78 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
79 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
80 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
81 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
85 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
86 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
87 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
88 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
89 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
90 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
91 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
92 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
93 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
94 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
95 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
96 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
97 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
98 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
99 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
100 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
101 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
102 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
103 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
104 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
105 3300049773 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_B_4_control Metagenome Rhizosphere
106 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
109 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
110 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
111 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
112 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.12
Metatranscriptomes 0
Isolates 1.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.25
Nodule 0
Rhizoplane 1.88
Rhizosphere 93.75
Stem 0
Stem Tuber 0
Unclassified 10.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207683_10239130 3300026121 Bacteria 1656
2 Ga0065714_10007377 3300005288 Bacteria 4226
3 Ga0065714_10119428 3300005288 Bacteria 1367
4 Ga0065714_10138466 3300005288 Bacteria 1190
5 Ga0065714_10148329 3300005288 Unclassified 1123
6 Ga0065712_10004965 3300005290 Bacteria 3015
7 Ga0065712_10139138 3300005290 Bacteria 1467
8 Ga0065715_10119829 3300005293 Bacteria 2275
9 Ga0070658_10146323 3300005327 Bacteria 1976
10 Ga0070670_100126638 3300005331 Bacteria 2205
11 Ga0070670_100199275 3300005331 Bacteria 1739
12 Ga0070670_100270381 3300005331 Bacteria 1483
13 Ga0070670_101157497 3300005331 Bacteria 706
14 Ga0070682_100407987 3300005337 Bacteria 1029
15 Ga0070689_100004849 3300005340 Bacteria 9127
16 Ga0070689_100251959 3300005340 Bacteria 1457
17 Ga0070687_100021072 3300005343 Bacteria 3057
18 Ga0070668_101767897 3300005347 Unclassified 568
19 Ga0070669_100098699 3300005353 Bacteria 2200
20 Ga0070675_100005674 3300005354 Bacteria 9555
21 Ga0070675_100184049 3300005354 Bacteria 1807
22 Ga0070675_100628304 3300005354 Bacteria 975
23 Ga0070674_100528133 3300005356 Bacteria 987
24 Ga0070673_100016475 3300005364 Bacteria 5227
25 Ga0070688_100002757 3300005365 Bacteria 8926
26 Ga0070688_100947207 3300005365 Bacteria 681
27 Ga0070667_100441462 3300005367 Bacteria 1188
28 Ga0070700_101082539 3300005441 Bacteria 663
29 Ga0070678_100074607 3300005456 Bacteria 2550
30 Ga0068867_100128529 3300005459 Bacteria 1966
31 Ga0068867_101497052 3300005459 Bacteria 628
32 Ga0070685_10002205 3300005466 Bacteria 10052
33 Ga0070679_100096038 3300005530 Bacteria 2951
34 Ga0070672_100136694 3300005543 Bacteria 2019
35 Ga0070672_100159937 3300005543 Bacteria 1868
36 Ga0070672_100222834 3300005543 Bacteria 1582
37 Ga0070672_100311313 3300005543 Bacteria 1337
38 Ga0070672_100770591 3300005543 Bacteria 845
39 Ga0070693_100396372 3300005547 Bacteria 956
40 Ga0068855_100026816 3300005563 Bacteria 6893
41 Ga0070664_101195241 3300005564 Unclassified 717
42 Ga0068852_100463917 3300005616 Bacteria 1256
43 Ga0068852_100803454 3300005616 Bacteria 955
44 Ga0068859_100015090 3300005617 Bacteria 7756
45 Ga0068870_10046719 3300005840 Bacteria 2272
46 Ga0097621_100133496 3300006237 Bacteria 2115
47 Ga0068871_100040251 3300006358 Bacteria 3743
48 Ga0097620_100015090 3300006931 Bacteria 7756
49 Ga0105251_10072027 3300009011 Bacteria 1607
50 Ga0111539_10042886 3300009094 Bacteria 5428
51 Ga0157373_10000290 3300013100 Bacteria 40415
52 Ga0157371_10009402 3300013102 Bacteria 7697
53 Ga0157370_10003681 3300013104 Bacteria 17905
54 Ga0157370_10003929 3300013104 Bacteria 17298
55 Ga0157370_10043720 3300013104 Bacteria 4309
56 Ga0157370_10052524 3300013104 Bacteria 3891
57 Ga0157370_10228268 3300013104 Bacteria 1723
58 Ga0157370_11231736 3300013104 Bacteria 675
59 Ga0163162_10433052 3300013306 Bacteria 1447
60 Ga0163162_11442444 3300013306 Bacteria 783
61 Ga0157372_10015713 3300013307 Bacteria 8118
62 Ga0157372_10770408 3300013307 Bacteria 1118
63 Ga0157372_11263624 3300013307 Bacteria 852
64 Ga0157375_10474116 3300013308 Bacteria 1417
65 Ga0157375_10588873 3300013308 Bacteria 1272
66 Ga0163163_11244711 3300014325 Bacteria 807
67 Ga0157380_10034903 3300014326 Bacteria 3881
68 Ga0157380_10304409 3300014326 Unclassified 1470
69 Ga0157380_10970583 3300014326 Unclassified 881
70 Ga0157380_11763109 3300014326 Bacteria 678
71 Ga0182008_10007654 3300014497 Bacteria 5953
72 Ga0157377_10003455 3300014745 Bacteria 7157
73 Ga0157376_10006720 3300014969 Bacteria 8142
74 Ga0157376_10546996 3300014969 Bacteria 1145
75 Ga0157376_11776680 3300014969 Bacteria 653
76 Ga0182006_1032314 3300015261 Bacteria 2104
77 Ga0163161_10014407 3300017792 Bacteria 5506
78 Ga0163161_10134022 3300017792 Bacteria 1871
79 Ga0209646_1000689 3300025246 Bacteria 12212
80 Ga0207697_10395347 3300025315 Bacteria 614
81 Ga0207660_10240825 3300025917 Bacteria 1425
82 Ga0207681_10024385 3300025923 Bacteria 3882
83 Ga0207650_10277511 3300025925 Bacteria 1364
84 Ga0207650_10647662 3300025925 Bacteria 890
85 Ga0207650_11072760 3300025925 Bacteria 685
86 Ga0207659_10017648 3300025926 Bacteria 4663
87 Ga0207659_10074016 3300025926 Bacteria 2496
88 Ga0207690_10288521 3300025932 Bacteria 1280
89 Ga0207670_10002197 3300025936 Bacteria 10202
90 Ga0207691_10229048 3300025940 Bacteria 1610
91 Ga0207691_10337492 3300025940 Bacteria 1290
92 Ga0207691_10352205 3300025940 Bacteria 1260
93 Ga0207691_10377021 3300025940 Unclassified 1211
94 Ga0207667_10720142 3300025949 Bacteria 999
95 Ga0207651_10029377 3300025960 Bacteria 3482
96 Ga0207648_10102599 3300026089 Bacteria 2507
97 Ga0207648_11158836 3300026089 Bacteria 726
98 Ga0207648_11321677 3300026089 Bacteria 677
99 Ga0207675_101100660 3300026118 Bacteria 814
100 Ga0207683_10150640 3300026121 Bacteria 2099
101 Ga0207698_12242076 3300026142 Unclassified 559
102 Ga0207428_10044807 3300027907 Bacteria 3566
103 Ga0316176_1118316 3300030732 Bacteria 9954
104 Ga0316183_1208293 3300030742 Bacteria 35492
105 Ga0316181_1124639 3300030744 Bacteria 2366
106 Ga0316182_1357509 3300030745 Unclassified 631
107 Ga0307509_10013886 3300031507 Bacteria 9500
108 Ga0307412_10343739 3300031911 Bacteria 1195
109 Ga0307414_10173208 3300032004 Bacteria 1728
110 Ga0307414_10542828 3300032004 Unclassified 1035
111 Ga0307414_11020316 3300032004 Bacteria 762
112 Ga0307414_11331125 3300032004 Unclassified 667
113 Ga0307415_102037195 3300032126 Bacteria 559
114 Ga0373927_0026980 3300035695 Bacteria 3753
115 Ga0395899_0015826 3300037312 Bacteria 5750
116 Ga0395900_0218453 3300037418 Unclassified 1922
117 Ga0395898_0007001 3300037466 Bacteria 11983
118 Ga0395898_0709502 3300037466 Bacteria 948
119 Ga0395901_0001623 3300038443 Bacteria 23267
120 Ga0439466_0003059 3300041411 Bacteria 6518
121 Ga0451789_0893209 3300041443 Unclassified 664
122 Ga0451807_1950477 3300041486 Bacteria 512
123 Ga0451807_2127080 3300041486 Bacteria 1303
124 Ga0451839_1531635 3300041496 Bacteria 862
125 Ga0439449_0062035 3300042007 Bacteria 1379
126 Ga0439462_0050472 3300042015 Bacteria 1117
127 Ga0453683_0001832 3300044673 Bacteria 17513
128 Ga0453684_0290086 3300044712 Bacteria 1863
129 Ga0451576_0006455 3300045051 Bacteria 14378
130 Ga0495606_0093500 3300046507 Bacteria 1844
131 Ga0495608_0618451 3300046511 Bacteria 649
132 Ga0495610_0002618 3300046512 Bacteria 14904
133 Ga0495630_0639764 3300046517 Bacteria 815
134 Ga0495681_0187234 3300047470 Bacteria 847
135 Ga0496118_0175258 3300048921 Bacteria 1304
136 Ga0501291_007645 3300049514 Bacteria 1472
137 Ga0501217_027975 3300049661 Bacteria 1371
138 Ga0501217_161783 3300049661 Bacteria 676
139 Ga0501223_100474 3300049663 Bacteria 595
140 Ga0501227_093120 3300049665 Unclassified 797
141 Ga0501240_006522 3300049673 Bacteria 1438
142 Ga0501242_023535 3300049674 Unclassified 804
143 Ga0501243_092141 3300049675 Bacteria 603
144 Ga0501249_022100 3300049679 Bacteria 1391
145 Ga0501257_048953 3300049686 Bacteria 1051
146 Ga0501259_011402 3300049688 Bacteria 1469
147 Ga0501261_102016 3300049690 Unclassified 547
148 Ga0501219_000015 3300049703 Bacteria 26451
149 Ga0501225_0001984 3300049705 Bacteria 6391
150 Ga0501225_0017592 3300049705 Bacteria 1984
151 Ga0501245_007506 3300049708 Bacteria 1543
152 Ga0501270_116296 3300049767 Bacteria 577
153 Ga0501276_003800 3300049773 Bacteria 1111
154 Ga0501284_00001 3300050005 Bacteria 261916
155 nmdc:mga08y16_76273_c1 3300050511 Unclassified 3494
156 Ga0500651_0497858 3300053093 Unclassified 672
157 Ga0500608_000292 3300053122 Bacteria 19418
158 2857630238 2857627736 Bacteria 5625397
159 2910248337 2910245624 Bacteria 6935613
160 2954018809 2954016120 Bacteria 6446024
161 Ga0207683_10239130
162 Ga0065714_10007377
163 Ga0065714_10119428
164 Ga0065714_10138466
165 Ga0065714_10148329
166 Ga0065712_10004965
167 Ga0065712_10139138
168 Ga0065715_10119829
169 Ga0070658_10146323
170 Ga0070670_100126638
171 Ga0070670_100199275
172 Ga0070670_100270381
173 Ga0070670_101157497
174 Ga0070682_100407987
175 Ga0070689_100004849
176 Ga0070689_100251959
177 Ga0070687_100021072
178 Ga0070668_101767897
179 Ga0070669_100098699
180 Ga0070675_100005674
181 Ga0070675_100184049
182 Ga0070675_100628304
183 Ga0070674_100528133
184 Ga0070673_100016475
185 Ga0070688_100002757
186 Ga0070688_100947207
187 Ga0070667_100441462
188 Ga0070700_101082539
189 Ga0070678_100074607
190 Ga0068867_100128529
191 Ga0068867_101497052
192 Ga0070685_10002205
193 Ga0070679_100096038
194 Ga0070672_100136694
195 Ga0070672_100159937
196 Ga0070672_100222834
197 Ga0070672_100311313
198 Ga0070672_100770591
199 Ga0070693_100396372
200 Ga0068855_100026816
201 Ga0070664_101195241
202 Ga0068852_100463917
203 Ga0068852_100803454
204 Ga0068859_100015090
205 Ga0068870_10046719
206 Ga0097621_100133496
207 Ga0068871_100040251
208 Ga0097620_100015090
209 Ga0105251_10072027
210 Ga0111539_10042886
211 Ga0157373_10000290
212 Ga0157371_10009402
213 Ga0157370_10003681
214 Ga0157370_10003929
215 Ga0157370_10043720
216 Ga0157370_10052524
217 Ga0157370_10228268
218 Ga0157370_11231736
219 Ga0163162_10433052
220 Ga0163162_11442444
221 Ga0157372_10015713
222 Ga0157372_10770408
223 Ga0157372_11263624
224 Ga0157375_10474116
225 Ga0157375_10588873
226 Ga0163163_11244711
227 Ga0157380_10034903
228 Ga0157380_10304409
229 Ga0157380_10970583
230 Ga0157380_11763109
231 Ga0182008_10007654
232 Ga0157377_10003455
233 Ga0157376_10006720
234 Ga0157376_10546996
235 Ga0157376_11776680
236 Ga0182006_1032314
237 Ga0163161_10014407
238 Ga0163161_10134022
239 Ga0209646_1000689
240 Ga0207697_10395347
241 Ga0207660_10240825
242 Ga0207681_10024385
243 Ga0207650_10277511
244 Ga0207650_10647662
245 Ga0207650_11072760
246 Ga0207659_10017648
247 Ga0207659_10074016
248 Ga0207690_10288521
249 Ga0207670_10002197
250 Ga0207691_10229048
251 Ga0207691_10337492
252 Ga0207691_10352205
253 Ga0207691_10377021
254 Ga0207667_10720142
255 Ga0207651_10029377
256 Ga0207648_10102599
257 Ga0207648_11158836
258 Ga0207648_11321677
259 Ga0207675_101100660
260 Ga0207683_10150640
261 Ga0207698_12242076
262 Ga0207428_10044807
263 Ga0316176_1118316
264 Ga0316183_1208293
265 Ga0316181_1124639
266 Ga0316182_1357509
267 Ga0307509_10013886
268 Ga0307412_10343739
269 Ga0307414_10173208
270 Ga0307414_10542828
271 Ga0307414_11020316
272 Ga0307414_11331125
273 Ga0307415_102037195
274 Ga0373927_0026980
275 Ga0395899_0015826
276 Ga0395900_0218453
277 Ga0395898_0007001
278 Ga0395898_0709502
279 Ga0395901_0001623
280 Ga0439466_0003059
281 Ga0451789_0893209
282 Ga0451807_1950477
283 Ga0451807_2127080
284 Ga0451839_1531635
285 Ga0439449_0062035
286 Ga0439462_0050472
287 Ga0453683_0001832
288 Ga0453684_0290086
289 Ga0451576_0006455
290 Ga0495606_0093500
291 Ga0495608_0618451
292 Ga0495610_0002618
293 Ga0495630_0639764
294 Ga0495681_0187234
295 Ga0496118_0175258
296 Ga0501291_007645
297 Ga0501217_027975
298 Ga0501217_161783
299 Ga0501223_100474
300 Ga0501227_093120
301 Ga0501240_006522
302 Ga0501242_023535
303 Ga0501243_092141
304 Ga0501249_022100
305 Ga0501257_048953
306 Ga0501259_011402
307 Ga0501261_102016
308 Ga0501219_000015
309 Ga0501225_0001984
310 Ga0501225_0017592
311 Ga0501245_007506
312 Ga0501270_116296
313 Ga0501276_003800
314 Ga0501284_00001
315 nmdc:mga08y16_76273_c1
316 Ga0500651_0497858
317 Ga0500608_000292
318 2857630238
319 2910248337
320 2954018809

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07883

Cupin_2

Cupin domain

84

153

0.91

PF02311

AraC_binding

AraC-like ligand binding domain

87

160

0.88

PF00190

Cupin_1

Cupin

58

171

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2f4p-assembly2.cif.gz_C crystal structure of a cupin-like protein (tm1010) from thermotoga maritima msb8 at 1.90 a resolution 0.9747 38 165
2ozj-assembly2.cif.gz_B-3 crystal structure of a cupin superfamily protein (dsy2733) from desulfitobacterium hafniense dcb-2 at 1.60 a resolution 0.9441 55 143
3rns-assembly1.cif.gz_A cupin 2 conserved barrel domain protein from leptotrichia buccalis 0.9349 53 143
2f4p-assembly2.cif.gz_C crystal structure of a cupin-like protein (tm1010) from thermotoga maritima msb8 at 1.90 a resolution 0.9318 38 165
3fjs-assembly2.cif.gz_D crystal structure of a putative biosynthetic protein with rmlc-like cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a resolution 0.9255 57 143
ID Description Score Start End Superfamily
2f4pA00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9464 39 165 2.60.120.10
3fjsA00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9273 57 143 2.60.120.10
af_A0A0P0VIM4_38_317_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9141 68 141 2.60.120.10
3rnsA01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9105 55 144 2.60.120.10
af_P17410_9_96_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.909 69 141 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A520HZG1-F1-model_v4 Cupin domain-containing protein 1.003 71 162
AF-A0A2G6UNS4-F1-model_v4 Quercetin dioxygenase-like cupin family protein 0.9862 38 163 GO:0051213
AF-A0A328BUQ1-F1-model_v4 Cupin domain-containing protein 0.9843 38 165
AF-A0A0J0YAD3-F1-model_v4 Cupin 0.9842 38 161
AF-A0A5M8QTV0-F1-model_v4 Cupin domain-containing protein 0.9832 38 165

Map