F234530

General Info

Members Datasets Scaffolds Average Seq Length
160 138 321 531

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10031206|Ga0105248_100312063
Length 611
Sequence MPRRVNGSHFSRPPRLIAIGPTVDPLRQANDKPVIRRSDLGNRIRLRCAEPAGGMSRSGVLGADMVQTRFLVFALVVVATLGCAVLAPMEPVAAWALLPLLFLTALGIYDLVQRRHAILRNYPLTGHLRFLLEAVRPEIRQYFIEGERDALPFSQDQRAMVYKRAKGINDAQPFGTLLDVREPGYAWISHSIRPGAIESHDFRIAVGGPRCRQPYSLSVYNISGTSFGALSGPAIMALNRGAKLGGFAQNTGEGSISPWHRVHGGDLVWQVATGYFGCRTPEGRFDPDKFREVAADPQVKMIEVKLSQGAKPGHGGVLPKAKLTEEIARTRGVAMDCDCVSPARHSAFSTPLELMGFLDRLRELSGGKPVGLKLAVGHRSEFLAMVKAMLATGITPDFIVVDGSEGGTGAAPVELSNNVGMPLFDALNFVHNALVGAGLRGAVRIGASGKLISAFDLAQAFAFGADYALSARGFMFALGCIQARNCHTNRCPTGIATQDPGRSRAIDVPDKAQRIANFHENTLRALAELLESAGLDTPARLAPRYLHIRQPDGRALNGSVRYPATPAGGLLDGQCPADLLEDWTRAQAGSFDLAECPEDAPAARLVEVGSA

Samples

Sample ID Description Type Environment
1 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
29 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
36 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
37 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
58 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
59 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
60 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
61 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
68 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
75 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
76 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
77 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
78 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
79 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
83 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
84 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
85 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
86 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
87 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
88 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
89 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
90 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
94 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
95 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
96 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
97 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
100 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
101 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
102 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
112 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
113 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
114 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
119 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
120 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
121 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
122 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
123 2643221570 Acidovorax sp. Root568 Isolate Unclassified
124 2643221585 Pelomonas sp. Root662 Isolate Unclassified
125 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
126 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
127 2643221656 Pelomonas sp. Root405 Isolate Unclassified
128 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
129 2738541337 Pelomonas sp. BT06 Isolate Unclassified
130 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
131 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
132 2902792274 Mycolicibacterium sp. P9-64 Isolate Unclassified
133 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
134 2919513703 Luteimonas sp. 3794 Isolate Unclassified
135 2919675420 Luteimonas terrae 4099 Isolate Unclassified
136 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
137 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
138 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.38
Metatranscriptomes 0
Isolates 10.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.62
Nodule 0
Rhizoplane 1.88
Rhizosphere 68.12
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105248_10031206 3300009177 Bacteria 5956
2 SwRhRL2b_contig_3658833 2162886007 Bacteria 11580
3 rootH1_10001382 3300003316 Bacteria 13286
4 rootL2_10026272 3300003322 Bacteria 4194
5 rootH1_10095650 3300003323 Bacteria 4521
6 rootH1_10152757 3300003316 Bacteria 1324
7 rootH1_10152757 3300003323 Bacteria 10956
8 Ga0055526_1000258 3300003771 Bacteria 44725
9 Ga0055531_10000247 3300003794 Bacteria 58229
10 Ga0065704_10070157 3300005289 Bacteria 211668
11 Ga0070658_10025989 3300005327 Bacteria 4697
12 Ga0070666_10025489 3300005335 Bacteria 3856
13 Ga0070668_100003911 3300005347 Bacteria 11002
14 Ga0070669_100000291 3300005353 Bacteria 39339
15 Ga0070671_100015301 3300005355 Bacteria 6196
16 Ga0070667_100000160 3300005367 Bacteria 83754
17 Ga0070679_100011790 3300005530 Bacteria 8336
18 Ga0070684_100074676 3300005535 Bacteria 2988
19 Ga0070665_100000101 3300005548 Bacteria 159353
20 Ga0068859_100022955 3300005617 Bacteria 6257
21 Ga0068863_100032421 3300005841 Bacteria 4981
22 Ga0068863_100074058 3300005841 Bacteria 3221
23 Ga0068858_100000397 3300005842 Bacteria 45633
24 Ga0068860_100005319 3300005843 Bacteria 13065
25 Ga0068860_100029409 3300005843 Bacteria 5285
26 Ga0068862_100003464 3300005844 Bacteria 13574
27 Ga0081455_10005080 3300005937 Bacteria 14528
28 Ga0081455_10012064 3300005937 Bacteria 8644
29 Ga0075369_10007353 3300006186 Bacteria 4191
30 Ga0075369_10009385 3300006186 Bacteria 3799
31 Ga0075366_10003120 3300006195 Bacteria 8668
32 Ga0075370_10005176 3300006353 Bacteria 6443
33 Ga0097620_100022955 3300006931 Bacteria 6257
34 Ga0105251_10002929 3300009011 Bacteria 12791
35 Ga0105244_10002049 3300009036 Bacteria 15522
36 Ga0105245_10073955 3300009098 Bacteria 3100
37 Ga0105247_10006220 3300009101 Bacteria 7404
38 Ga0105243_10063552 3300009148 Bacteria 2958
39 Ga0105249_10112266 3300009553 Bacteria 2578
40 Ga0157370_10125475 3300013104 Bacteria 2396
41 Ga0213872_10000371 3300021361 Bacteria 37677
42 Ga0213872_10039709 3300021361 Bacteria 2147
43 Ga0207425_1000417 3300025245 Bacteria 28632
44 Ga0209564_1000026 3300025295 Bacteria 519154
45 Ga0209051_1012847 3300025303 Bacteria 4026
46 Ga0209257_1000016 3300025304 Bacteria 908015
47 Ga0209257_1023462 3300025304 Bacteria 2168
48 Ga0207655_1003166 3300025728 Bacteria 12424
49 Ga0207713_1002253 3300025735 Bacteria 14260
50 Ga0207680_10008182 3300025903 Bacteria 5124
51 Ga0207652_10002433 3300025921 Bacteria 15718
52 Ga0207681_10000224 3300025923 Bacteria 44695
53 Ga0207644_10001440 3300025931 Bacteria 15329
54 Ga0207644_10078248 3300025931 Bacteria 2437
55 Ga0207711_10018829 3300025941 Bacteria 5740
56 Ga0207679_10048493 3300025945 Bacteria 3092
57 Ga0207658_10002872 3300025986 Bacteria 12342
58 Ga0207658_10014520 3300025986 Bacteria 5393
59 Ga0207703_10001606 3300026035 Bacteria 20452
60 Ga0207678_10144620 3300026067 Bacteria 2030
61 Ga0207641_10002819 3300026088 Bacteria 15805
62 Ga0207641_10013881 3300026088 Bacteria 6607
63 Ga0268265_10014778 3300028380 Bacteria 5327
64 Ga0268264_10053741 3300028381 Bacteria 3361
65 Ga0268264_10072700 3300028381 Bacteria 2916
66 Ga0265318_10000277 3300028577 Bacteria 42980
67 Ga0307515_10138147 3300028794 Bacteria 2633
68 Ga0265338_10018691 3300028800 Bacteria 7406
69 Ga0316182_1039899 3300030745 Bacteria 5267
70 Ga0265328_10003625 3300031239 Bacteria 6811
71 Ga0265325_10035669 3300031241 Bacteria 2640
72 Ga0265329_10002970 3300031242 Bacteria 7538
73 Ga0265340_10001462 3300031247 Bacteria 13544
74 Ga0265339_10018682 3300031249 Bacteria 4083
75 Ga0307513_10024374 3300031456 Bacteria 7039
76 Ga0307408_100000073 3300031548 Bacteria 113106
77 Ga0307408_100000111 3300031548 Bacteria 90575
78 Ga0265313_10000919 3300031595 Bacteria 29443
79 Ga0265313_10003039 3300031595 Bacteria 13944
80 Ga0265314_10010876 3300031711 Bacteria 7564
81 Ga0265342_10005945 3300031712 Bacteria 9183
82 Ga0265342_10015965 3300031712 Bacteria 4921
83 Ga0307516_10011776 3300031730 Bacteria 9485
84 Ga0307516_10127740 3300031730 Bacteria 2325
85 Ga0307405_10061970 3300031731 Bacteria 2366
86 Ga0307410_10005733 3300031852 Bacteria 6618
87 Ga0307409_100061583 3300031995 Bacteria 2933
88 Ga0307414_10099361 3300032004 Bacteria 2186
89 Ga0307411_10000227 3300032005 Bacteria 18298
90 Ga0316583_10011053 3300032133 Bacteria 3251
91 Ga0373948_0000970 3300034817 Bacteria 3850
92 Ga0373939_0000331 3300035114 Bacteria 12114
93 Ga0373931_0000423 3300035691 Bacteria 17314
94 Ga0373947_0045451 3300035725 Bacteria 2628
95 Ga0316584_0026208 3300036712 Bacteria 4283
96 Ga0395905_0004744 3300037471 Bacteria 14046
97 Ga0436361_0440135 3300039447 Bacteria 4329
98 Ga0436361_0706587 3300039447 Bacteria 37451
99 Ga0436361_0831528 3300039447 Bacteria 14819
100 Ga0439465_0012066 3300041413 Bacteria 2706
101 Ga0451837_0146660 3300041494 Bacteria 8922
102 Ga0451839_0507954 3300041496 Bacteria 3714
103 Ga0450888_000218 3300042126 Bacteria 5154
104 Ga0450890_001015 3300042127 Bacteria 4071
105 Ga0450891_000110 3300042129 Bacteria 7226
106 Ga0450892_000179 3300042130 Bacteria 7266
107 Ga0450889_000773 3300042144 Bacteria 3435
108 Ga0450893_0001424 3300042532 Bacteria 3660
109 Ga0453684_0000298 3300044712 Bacteria 209777
110 Ga0495638_0077735 3300046460 Bacteria 2020
111 Ga0495650_0000411 3300046471 Bacteria 69989
112 Ga0495596_0000294 3300046500 Bacteria 33153
113 Ga0495610_0004854 3300046512 Bacteria 9781
114 Ga0495654_0006035 3300046530 Bacteria 6955
115 Ga0495597_0003181 3300046542 Bacteria 9810
116 Ga0495686_0009360 3300047472 Bacteria 7064
117 Ga0495626_0000001 3300048091 Bacteria 1077129
118 Ga0495626_0001951 3300048091 Bacteria 15322
119 Ga0496103_0061905 3300048906 Bacteria 2329
120 Ga0496108_0048515 3300048911 Bacteria 3550
121 Ga0496114_0020692 3300048917 Bacteria 5341
122 Ga0496117_0094158 3300048920 Bacteria 1918
123 Ga0496120_0064980 3300048923 Bacteria 2024
124 Ga0496121_0007488 3300048924 Bacteria 13186
125 Ga0496125_0088119 3300048928 Bacteria 2341
126 Ga0496125_0107540 3300048928 Bacteria 2032
127 Ga0496126_0027909 3300048929 Bacteria 5384
128 Ga0501300_000846 3300049523 Bacteria 4657
129 Ga0501033_0048775 3300049570 Bacteria 3145
130 Ga0501046_0022067 3300049580 Bacteria 5248
131 Ga0501233_006057 3300049668 Bacteria 2261
132 Ga0501235_006422 3300049669 Bacteria 2560
133 Ga0501229_000967 3300049706 Bacteria 3262
134 Ga0501262_000789 3300049759 Bacteria 3652
135 Ga0501044_0066858 3300049823 Bacteria 3664
136 Ga0501044_0123409 3300049823 Bacteria 2589
137 Ga0501044_0137448 3300049823 Bacteria 2434
138 nmdc:mga07m45_236_c1 3300050496 Bacteria 22214
139 nmdc:mga07m45_28661_c1 3300050496 Bacteria 3073
140 nmdc:mga05p37_92740_c1 3300050507 Bacteria 3721
141 nmdc:mga0sz30_671_c2 3300050516 Bacteria 5725
142 Ga0500642_0000709 3300053130 Bacteria 9858
143 Ga0500652_000633 3300053131 Bacteria 12031
144 Ga0500645_000128 3300053730 Bacteria 59444
145 2643741615 2643221544 Bacteria 5886209
146 2643868305 2643221570 Bacteria 5103772
147 2643935033 2643221585 Bacteria 5812563
148 2644220363 2643221639 Bacteria 6649903
149 2644259289 2643221646 Bacteria 6433402
150 2644316520 2643221656 Bacteria 5809961
151 2738708144 2738541274 Bacteria 6909446
152 2739053547 2738541337 Bacteria 6183410
153 2739334703 2738543028 Bacteria 6917070
154 2895881038 2895880812 Bacteria 11255272
155 2902795789 2902792274 Bacteria 7270173
156 2902803830 2902799365 Bacteria 5419524
157 2919516336 2919513703 Bacteria 3844312
158 2919676825 2919675420 Bacteria 3969095
159 2919709273 2919709256 Bacteria 4318106
160 2932423085 2932422444 Bacteria 4678430
161 2939589367 2939582691 Bacteria 7088898
162 Ga0105248_10031206
163 SwRhRL2b_contig_3658833
164 rootH1_10001382
165 rootL2_10026272
166 rootH1_10095650
167 rootH1_10152757
168 Ga0055526_1000258
169 Ga0055531_10000247
170 Ga0065704_10070157
171 Ga0070658_10025989
172 Ga0070666_10025489
173 Ga0070668_100003911
174 Ga0070669_100000291
175 Ga0070671_100015301
176 Ga0070667_100000160
177 Ga0070679_100011790
178 Ga0070684_100074676
179 Ga0070665_100000101
180 Ga0068859_100022955
181 Ga0068863_100032421
182 Ga0068863_100074058
183 Ga0068858_100000397
184 Ga0068860_100005319
185 Ga0068860_100029409
186 Ga0068862_100003464
187 Ga0081455_10005080
188 Ga0081455_10012064
189 Ga0075369_10007353
190 Ga0075369_10009385
191 Ga0075366_10003120
192 Ga0075370_10005176
193 Ga0097620_100022955
194 Ga0105251_10002929
195 Ga0105244_10002049
196 Ga0105245_10073955
197 Ga0105247_10006220
198 Ga0105243_10063552
199 Ga0105249_10112266
200 Ga0157370_10125475
201 Ga0213872_10000371
202 Ga0213872_10039709
203 Ga0207425_1000417
204 Ga0209564_1000026
205 Ga0209051_1012847
206 Ga0209257_1000016
207 Ga0209257_1023462
208 Ga0207655_1003166
209 Ga0207713_1002253
210 Ga0207680_10008182
211 Ga0207652_10002433
212 Ga0207681_10000224
213 Ga0207644_10001440
214 Ga0207644_10078248
215 Ga0207711_10018829
216 Ga0207679_10048493
217 Ga0207658_10002872
218 Ga0207658_10014520
219 Ga0207703_10001606
220 Ga0207678_10144620
221 Ga0207641_10002819
222 Ga0207641_10013881
223 Ga0268265_10014778
224 Ga0268264_10053741
225 Ga0268264_10072700
226 Ga0265318_10000277
227 Ga0307515_10138147
228 Ga0265338_10018691
229 Ga0316182_1039899
230 Ga0265328_10003625
231 Ga0265325_10035669
232 Ga0265329_10002970
233 Ga0265340_10001462
234 Ga0265339_10018682
235 Ga0307513_10024374
236 Ga0307408_100000073
237 Ga0307408_100000111
238 Ga0265313_10000919
239 Ga0265313_10003039
240 Ga0265314_10010876
241 Ga0265342_10005945
242 Ga0265342_10015965
243 Ga0307516_10011776
244 Ga0307516_10127740
245 Ga0307405_10061970
246 Ga0307410_10005733
247 Ga0307409_100061583
248 Ga0307414_10099361
249 Ga0307411_10000227
250 Ga0316583_10011053
251 Ga0373948_0000970
252 Ga0373939_0000331
253 Ga0373931_0000423
254 Ga0373947_0045451
255 Ga0316584_0026208
256 Ga0395905_0004744
257 Ga0436361_0440135
258 Ga0436361_0706587
259 Ga0436361_0831528
260 Ga0439465_0012066
261 Ga0451837_0146660
262 Ga0451839_0507954
263 Ga0450888_000218
264 Ga0450890_001015
265 Ga0450891_000110
266 Ga0450892_000179
267 Ga0450889_000773
268 Ga0450893_0001424
269 Ga0453684_0000298
270 Ga0495638_0077735
271 Ga0495650_0000411
272 Ga0495596_0000294
273 Ga0495610_0004854
274 Ga0495654_0006035
275 Ga0495597_0003181
276 Ga0495686_0009360
277 Ga0495626_0000001
278 Ga0495626_0001951
279 Ga0496103_0061905
280 Ga0496108_0048515
281 Ga0496114_0020692
282 Ga0496117_0094158
283 Ga0496120_0064980
284 Ga0496121_0007488
285 Ga0496125_0088119
286 Ga0496125_0107540
287 Ga0496126_0027909
288 Ga0501300_000846
289 Ga0501033_0048775
290 Ga0501046_0022067
291 Ga0501233_006057
292 Ga0501235_006422
293 Ga0501229_000967
294 Ga0501262_000789
295 Ga0501044_0066858
296 Ga0501044_0123409
297 Ga0501044_0137448
298 nmdc:mga07m45_236_c1
299 nmdc:mga07m45_28661_c1
300 nmdc:mga05p37_92740_c1
301 nmdc:mga0sz30_671_c2
302 Ga0500642_0000709
303 Ga0500652_000633
304 Ga0500645_000128
305 2643741615
306 2643868305
307 2643935033
308 2644220363
309 2644259289
310 2644316520
311 2738708144
312 2739053547
313 2739334703
314 2895881038
315 2902795789
316 2902803830
317 2919516336
318 2919676825
319 2919709273
320 2932423085
321 2939589367

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01645

Glu_synthase

Conserved region in glutamate synthase

210

536

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6s6s-assembly1.cif.gz_B structure of azospirillum brasilense glutamate synthase in a4b4 oligomeric state. 0.7954 79 502
7mfm-assembly1.cif.gz_G glutamate synthase, glutamate dehydrogenase counter-enzyme complex 0.7919 152 518
1ea0-assembly1.cif.gz_A alpha subunit of a. brasilense glutamate synthase 0.7752 84 514
6s6t-assembly1.cif.gz_B structure of azospirillum brasilense glutamate synthase in a4b3 oligomeric state 0.7748 84 501
1lm1-assembly1.cif.gz_A structural studies on the synchronization of catalytic centers in glutamate synthase: native enzyme 0.7487 84 505
ID Description Score Start End Superfamily
af_Q2FVF4_136_524_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9264 122 494 3.20.20.70
af_Q2FVF4_136_524_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.887 122 494 3.20.20.70
af_Q58746_138_506_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8221 125 474 3.20.20.70
1ea0A03 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7886 75 501 3.20.20.70
1ea0A03 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7849 75 501 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3B9IGI7-F1-model_v4 FMN-binding glutamate synthase family protein 0.9813 155 528 GO:0006537
GO:0015930
AF-A0A6I7WFN1-F1-model_v4 FMN-binding glutamate synthase family protein 0.9807 157 327 GO:0006537
GO:0015930
AF-A0A7Z9P136-F1-model_v4 FMN-binding glutamate synthase family protein 0.9797 120 525 GO:0006537
GO:0015930
AF-A0A059G7E6-F1-model_v4 Glutamate synthase 0.9794 158 527 GO:0006537
GO:0015930
AF-A0A4Q6DUA9-F1-model_v4 FMN-binding glutamate synthase family protein 0.9787 154 494 GO:0006537
GO:0015930

Map