F234001

General Info

Members Datasets Scaffolds Average Seq Length
160 124 320 425

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100097902|Ga0070708_1000979023
Length 484
Sequence MAILDELSARGLLADVTDRAGLAELLASPPVSLYAGYDPTSTSLHVGNLVPTILLKRFQLAGHRPIVVVGGATGMIGDPSGKSDERNLLDEATLAANVAGIRAQLANLLDFDDPKTGAAMTNNFDWTRGVSYLSFLRDYGKHLTINYMTAKDSVQNRLGLDGIVVHTKHGEIVHVDDVVAELAGRRAPELIGTPIGELVDRARGTIARASGEISVDLRTTESADGSIVVVGVRELKSGISYTEFSYMLLQAFDFVQLHRSHGCRLQVGGSDQWGNITAGCELARKLGEPTLFGLTAPLLLDSSGQKMGKTATGERVWLDAARTSPFDFYKYWFNVADGEAPGLLKMFSLRPLDELTELLHEHDRDRAKRVAQRELARALTGWVHGASAIAGIEAANRVMFGGDLTGLTDADLAQLAGTIPTLLARTVTASKGAARRLVEQGGAYVNNRKVSGIEHRVTLADLATETMLVVRSGKKDHHFVRMVR

Samples

Sample ID Description Type Environment
1 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
58 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
82 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
83 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
84 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
85 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
86 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
87 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
88 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
90 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
93 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
94 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
95 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
96 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
107 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
108 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
109 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
112 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
113 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
114 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
115 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
116 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
117 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
118 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
119 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
120 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
121 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
122 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
123 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
124 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.75
Metatranscriptomes 0
Isolates 1.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.5
Nodule 0
Rhizoplane 3.75
Rhizosphere 81.88
Stem 0
Stem Tuber 0
Unclassified 0.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070708_100097902 3300005445 Bacteria 2682
2 JGI25406J46586_10021160 3300003203 Bacteria 2616
3 Ga0070658_10144822 3300005327 Bacteria 1986
4 Ga0070670_100011681 3300005331 Bacteria 7511
5 Ga0070682_100090455 3300005337 Bacteria 2001
6 Ga0068868_100005174 3300005338 Bacteria 9156
7 Ga0070689_100003308 3300005340 Bacteria 10701
8 Ga0070689_100145274 3300005340 Bacteria 1910
9 Ga0070661_100065458 3300005344 Bacteria 2671
10 Ga0070668_100107043 3300005347 Bacteria 2222
11 Ga0070671_100000487 3300005355 Bacteria 27666
12 Ga0070688_100034992 3300005365 Bacteria 3048
13 Ga0070667_100003082 3300005367 Bacteria 14328
14 Ga0070694_100084562 3300005444 Bacteria 2214
15 Ga0070694_100107727 3300005444 Bacteria 1981
16 Ga0070708_100043368 3300005445 Bacteria 3953
17 Ga0070663_100004898 3300005455 Bacteria 7905
18 Ga0070706_100030331 3300005467 Bacteria 4982
19 Ga0070706_100187992 3300005467 Bacteria 1930
20 Ga0070707_100003815 3300005468 Bacteria 14210
21 Ga0070698_100198843 3300005471 Bacteria 1940
22 Ga0070679_100014559 3300005530 Bacteria 7557
23 Ga0070684_100023254 3300005535 Bacteria 5180
24 Ga0070665_100012204 3300005548 Bacteria 8663
25 Ga0070665_100020045 3300005548 Bacteria 6713
26 Ga0070665_100070724 3300005548 Bacteria 3496
27 Ga0070704_100119846 3300005549 Bacteria 2019
28 Ga0068855_100090798 3300005563 Bacteria 3524
29 Ga0070664_100003447 3300005564 Bacteria 12778
30 Ga0068854_100093675 3300005578 Bacteria 2239
31 Ga0068856_100118095 3300005614 Bacteria 2653
32 Ga0068852_100034168 3300005616 Bacteria 4229
33 Ga0068859_100152977 3300005617 Bacteria 2383
34 Ga0068864_100006491 3300005618 Bacteria 9581
35 Ga0068861_100052451 3300005719 Bacteria 3100
36 Ga0068861_100153061 3300005719 Bacteria 1894
37 Ga0068863_100005635 3300005841 Bacteria 12299
38 Ga0068862_100065107 3300005844 Bacteria 3139
39 Ga0068862_100129309 3300005844 Bacteria 2232
40 Ga0081455_10000032 3300005937 Bacteria 146266
41 Ga0081539_10000007 3300005985 Bacteria 532790
42 Ga0075363_100056328 3300006048 Bacteria 2107
43 Ga0075369_10042967 3300006186 Bacteria 1938
44 Ga0097621_100025116 3300006237 Bacteria 4659
45 Ga0075429_100020886 3300006880 Bacteria 5682
46 Ga0075429_100060269 3300006880 Bacteria 3306
47 Ga0075436_100107152 3300006914 Bacteria 1949
48 Ga0097620_100152979 3300006931 Bacteria 2383
49 Ga0075435_100080868 3300007076 Bacteria 2668
50 Ga0111539_10013234 3300009094 Bacteria 10312
51 Ga0111539_10019811 3300009094 Bacteria 8292
52 Ga0111539_10322493 3300009094 Bacteria 1798
53 Ga0105245_10000031 3300009098 Bacteria 151832
54 Ga0105245_10006415 3300009098 Bacteria 10352
55 Ga0105245_10129783 3300009098 Bacteria 2363
56 Ga0105248_10040077 3300009177 Bacteria 5250
57 Ga0105248_10175680 3300009177 Bacteria 2414
58 Ga0105238_10027032 3300009551 Bacteria 5848
59 Ga0105249_10102141 3300009553 Bacteria 2698
60 Ga0105239_10051878 3300010375 Bacteria 4496
61 Ga0105239_10214148 3300010375 Bacteria 2160
62 Ga0105239_10240139 3300010375 Bacteria 2033
63 Ga0105246_10254288 3300011119 Bacteria 1396
64 Ga0157369_10271595 3300013105 Bacteria 1767
65 Ga0157374_10004113 3300013296 Bacteria 12213
66 Ga0157374_10038455 3300013296 Bacteria 4398
67 Ga0157378_10223468 3300013297 Bacteria 1791
68 Ga0163162_10010082 3300013306 Bacteria 9185
69 Ga0157375_10002930 3300013308 Bacteria 14805
70 Ga0163163_10007498 3300014325 Bacteria 9630
71 Ga0157380_10002409 3300014326 Bacteria 12583
72 Ga0157379_10016761 3300014968 Bacteria 6448
73 Ga0157376_10042165 3300014969 Bacteria 3740
74 Ga0213876_10062968 3300021384 Unclassified 1958
75 Ga0207688_10006739 3300025901 Bacteria 6248
76 Ga0207645_10087074 3300025907 Bacteria 2007
77 Ga0207643_10006444 3300025908 Bacteria 6283
78 Ga0207662_10170193 3300025918 Bacteria 1396
79 Ga0207652_10046896 3300025921 Bacteria 3690
80 Ga0207646_10043631 3300025922 Bacteria 4026
81 Ga0207650_10018863 3300025925 Bacteria 4846
82 Ga0207687_10008545 3300025927 Bacteria 6697
83 Ga0207687_10012449 3300025927 Bacteria 5557
84 Ga0207687_10087161 3300025927 Bacteria 2268
85 Ga0207670_10010301 3300025936 Bacteria 5378
86 Ga0207691_10050161 3300025940 Bacteria 3822
87 Ga0207689_10033391 3300025942 Bacteria 4276
88 Ga0207689_10084565 3300025942 Bacteria 2608
89 Ga0207712_10051968 3300025961 Bacteria 2869
90 Ga0207677_10211158 3300026023 Bacteria 1550
91 Ga0207708_10021085 3300026075 Bacteria 4916
92 Ga0207641_10011258 3300026088 Bacteria 7336
93 Ga0207648_10034163 3300026089 Bacteria 4484
94 Ga0207676_10061290 3300026095 Bacteria 2978
95 Ga0207675_100001360 3300026118 Bacteria 24505
96 Ga0207675_100098869 3300026118 Bacteria 2748
97 Ga0207675_100158580 3300026118 Bacteria 2157
98 Ga0207683_10054919 3300026121 Bacteria 3493
99 Ga0207683_10087203 3300026121 Bacteria 2775
100 Ga0207428_10010180 3300027907 Bacteria 8406
101 Ga0207428_10010828 3300027907 Bacteria 8123
102 Ga0268266_10155895 3300028379 Bacteria 2062
103 Ga0307517_10074611 3300028786 Bacteria 2989
104 Ga0307515_10098407 3300028794 Bacteria 3563
105 Ga0265332_10028529 3300031238 Bacteria 2442
106 Ga0307513_10083759 3300031456 Bacteria 3278
107 Ga0307509_10018373 3300031507 Bacteria 8018
108 Ga0307509_10116117 3300031507 Bacteria 2667
109 Ga0307516_10054289 3300031730 Bacteria 3916
110 Ga0307406_10012064 3300031901 Bacteria 4916
111 Ga0307415_100048532 3300032126 Bacteria 2865
112 Ga0307415_100133470 3300032126 Bacteria 1884
113 Ga0373927_0003321 3300035695 Bacteria 11572
114 Ga0373937_0004124 3300036401 Bacteria 12328
115 Ga0373937_0011482 3300036401 Bacteria 7776
116 Ga0373925_0000330 3300037068 Bacteria 49273
117 Ga0395898_0147962 3300037466 Bacteria 2248
118 Ga0395901_0086802 3300038443 Bacteria 3271
119 Ga0436365_1653772 3300039437 Bacteria 1586
120 Ga0436365_1723118 3300039437 Bacteria 4926
121 Ga0451577_0001009 3300042876 Bacteria 40997
122 Ga0466972_0003989 3300044658 Bacteria 7352
123 Ga0466972_0064450 3300044658 Bacteria 1754
124 Ga0453684_0000117 3300044712 Bacteria 348119
125 Ga0453684_0041032 3300044712 Bacteria 6268
126 Ga0495634_0124463 3300046642 Bacteria 1649
127 Ga0496108_0181300 3300048911 Bacteria 1824
128 Ga0496109_0103523 3300048912 Bacteria 2642
129 Ga0496109_0150359 3300048912 Bacteria 2180
130 Ga0496112_0002324 3300048915 Bacteria 15255
131 Ga0496113_0111921 3300048916 Bacteria 2126
132 Ga0496114_0059546 3300048917 Bacteria 3190
133 Ga0501042_0072900 3300049578 Bacteria 2457
134 Ga0501046_0088108 3300049580 Bacteria 2391
135 Ga0501047_0012897 3300049581 Bacteria 7917
136 Ga0501047_0057176 3300049581 Bacteria 3772
137 Ga0501070_0161154 3300049586 Bacteria 1849
138 Ga0501216_001425 3300049660 Bacteria 3227
139 Ga0501227_000255 3300049665 Bacteria 10889
140 Ga0501225_0003912 3300049705 Bacteria 4459
141 Ga0501083_0095183 3300049744 Bacteria 1965
142 Ga0501044_0024382 3300049823 Bacteria 6423
143 nmdc:mga09592_116372_c1 3300050508 Bacteria 2294
144 nmdc:mga09592_67851_c1 3300050508 Bacteria 3025
145 nmdc:mga08y16_14496_c1 3300050511 Bacteria 8292
146 nmdc:mga08y16_8566_c1 3300050511 Bacteria 10717
147 Ga0495601_0027802 3300053077 Bacteria 3499
148 Ga0500583_0035615 3300053092 Bacteria 2222
149 Ga0500566_0054433 3300053094 Bacteria 2281
150 Ga0500640_070687 3300053095 Bacteria 1497
151 Ga0500554_000842 3300053102 Bacteria 6025
152 Ga0500572_015984 3300053111 Bacteria 1902
153 Ga0500595_001228 3300053119 Bacteria 14142
154 Ga0500614_001666 3300053123 Bacteria 5202
155 Ga0500568_0000075 3300053139 Bacteria 94413
156 Ga0500568_0002869 3300053139 Bacteria 9910
157 Ga0500568_0015342 3300053139 Bacteria 3432
158 Ga0530510_0074195 3300061734 Bacteria 2470
159 2558914152 2558860112 Bacteria 9931328
160 2870785437 2870782633 Bacteria 9624083
161 Ga0070708_100097902
162 JGI25406J46586_10021160
163 Ga0070658_10144822
164 Ga0070670_100011681
165 Ga0070682_100090455
166 Ga0068868_100005174
167 Ga0070689_100003308
168 Ga0070689_100145274
169 Ga0070661_100065458
170 Ga0070668_100107043
171 Ga0070671_100000487
172 Ga0070688_100034992
173 Ga0070667_100003082
174 Ga0070694_100084562
175 Ga0070694_100107727
176 Ga0070708_100043368
177 Ga0070663_100004898
178 Ga0070706_100030331
179 Ga0070706_100187992
180 Ga0070707_100003815
181 Ga0070698_100198843
182 Ga0070679_100014559
183 Ga0070684_100023254
184 Ga0070665_100012204
185 Ga0070665_100020045
186 Ga0070665_100070724
187 Ga0070704_100119846
188 Ga0068855_100090798
189 Ga0070664_100003447
190 Ga0068854_100093675
191 Ga0068856_100118095
192 Ga0068852_100034168
193 Ga0068859_100152977
194 Ga0068864_100006491
195 Ga0068861_100052451
196 Ga0068861_100153061
197 Ga0068863_100005635
198 Ga0068862_100065107
199 Ga0068862_100129309
200 Ga0081455_10000032
201 Ga0081539_10000007
202 Ga0075363_100056328
203 Ga0075369_10042967
204 Ga0097621_100025116
205 Ga0075429_100020886
206 Ga0075429_100060269
207 Ga0075436_100107152
208 Ga0097620_100152979
209 Ga0075435_100080868
210 Ga0111539_10013234
211 Ga0111539_10019811
212 Ga0111539_10322493
213 Ga0105245_10000031
214 Ga0105245_10006415
215 Ga0105245_10129783
216 Ga0105248_10040077
217 Ga0105248_10175680
218 Ga0105238_10027032
219 Ga0105249_10102141
220 Ga0105239_10051878
221 Ga0105239_10214148
222 Ga0105239_10240139
223 Ga0105246_10254288
224 Ga0157369_10271595
225 Ga0157374_10004113
226 Ga0157374_10038455
227 Ga0157378_10223468
228 Ga0163162_10010082
229 Ga0157375_10002930
230 Ga0163163_10007498
231 Ga0157380_10002409
232 Ga0157379_10016761
233 Ga0157376_10042165
234 Ga0213876_10062968
235 Ga0207688_10006739
236 Ga0207645_10087074
237 Ga0207643_10006444
238 Ga0207662_10170193
239 Ga0207652_10046896
240 Ga0207646_10043631
241 Ga0207650_10018863
242 Ga0207687_10008545
243 Ga0207687_10012449
244 Ga0207687_10087161
245 Ga0207670_10010301
246 Ga0207691_10050161
247 Ga0207689_10033391
248 Ga0207689_10084565
249 Ga0207712_10051968
250 Ga0207677_10211158
251 Ga0207708_10021085
252 Ga0207641_10011258
253 Ga0207648_10034163
254 Ga0207676_10061290
255 Ga0207675_100001360
256 Ga0207675_100098869
257 Ga0207675_100158580
258 Ga0207683_10054919
259 Ga0207683_10087203
260 Ga0207428_10010180
261 Ga0207428_10010828
262 Ga0268266_10155895
263 Ga0307517_10074611
264 Ga0307515_10098407
265 Ga0265332_10028529
266 Ga0307513_10083759
267 Ga0307509_10018373
268 Ga0307509_10116117
269 Ga0307516_10054289
270 Ga0307406_10012064
271 Ga0307415_100048532
272 Ga0307415_100133470
273 Ga0373927_0003321
274 Ga0373937_0004124
275 Ga0373937_0011482
276 Ga0373925_0000330
277 Ga0395898_0147962
278 Ga0395901_0086802
279 Ga0436365_1653772
280 Ga0436365_1723118
281 Ga0451577_0001009
282 Ga0466972_0003989
283 Ga0466972_0064450
284 Ga0453684_0000117
285 Ga0453684_0041032
286 Ga0495634_0124463
287 Ga0496108_0181300
288 Ga0496109_0103523
289 Ga0496109_0150359
290 Ga0496112_0002324
291 Ga0496113_0111921
292 Ga0496114_0059546
293 Ga0501042_0072900
294 Ga0501046_0088108
295 Ga0501047_0012897
296 Ga0501047_0057176
297 Ga0501070_0161154
298 Ga0501216_001425
299 Ga0501227_000255
300 Ga0501225_0003912
301 Ga0501083_0095183
302 Ga0501044_0024382
303 nmdc:mga09592_116372_c1
304 nmdc:mga09592_67851_c1
305 nmdc:mga08y16_14496_c1
306 nmdc:mga08y16_8566_c1
307 Ga0495601_0027802
308 Ga0500583_0035615
309 Ga0500566_0054433
310 Ga0500640_070687
311 Ga0500554_000842
312 Ga0500572_015984
313 Ga0500595_001228
314 Ga0500614_001666
315 Ga0500568_0000075
316 Ga0500568_0002869
317 Ga0500568_0015342
318 Ga0530510_0074195
319 2558914152
320 2870785437

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

27

167

0.96

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

225

401

0.94

PF22421

SYY_C-terminal

Tyrosine--tRNA ligase SYY-like C-terminal domain

407

480

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1tyb-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9393 1 318
1tyc-assembly1.cif.gz_A-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9392 1 318
2ts1-assembly1.cif.gz_A structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.9392 1 318
1tyd-assembly1.cif.gz_E-2 structure of tyrosyl-trna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.9391 1 318
1tya-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9387 1 318
ID Description Score Start End Superfamily
af_Q54WD9_272_382_1.10.240.10 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9711 224 326 1.10.240.10
af_P48527_296_399_1.10.240.10 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9619 224 326 1.10.240.10
2pidA02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9615 241 322 1.10.240.10
2pidB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9613 241 322 1.10.240.10
3zxiB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9612 241 318 1.10.240.10
ID Description Score Start End GO Terms
AF-A0A269XEI3-F1-model_v4 Tyrosine--tRNA ligase 0.9547 225 317 GO:0004831
GO:0005524
GO:0005829
GO:0006418
AF-A0A645F7T5-F1-model_v4 Tyrosine--tRNA ligase 1 (EC 6.1.1.1) 0.9532 206 424 GO:0003723
GO:0004831
GO:0005524
GO:0005739
GO:0005829
GO:0006437
AF-A0A6P0VUA0-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) 0.9523 285 424 GO:0003723
GO:0004831
GO:0005829
GO:0043039
AF-A0A3R7R6T3-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS) 0.9504 1 424 GO:0003723
GO:0004831
GO:0005524
GO:0005829
GO:0006437
AF-W4TNA0-F1-model_v4 deleted 0.949 222 318

Map