F233146

General Info

Members Datasets Scaffolds Average Seq Length
159 128 147 387

Family's Representative Sequence

Representative Sequence 3300049571|Ga0501034_0044844|Ga0501034_0044844_2342_3634
Length 425
Sequence MAVDGTAAGRDVRQAPRGSILNDPTFRSIVVQLLLAAALVAFVWWIAHNTIVNLRRLNIASGFDFLWERSGFDIGQTLIRYTQDSTYGRALVVGFLNTLLVAALGIFFATILGLILGIARLSRNWLVAKLAAVYVEVIRNVPVLLQLLFWYKAVLSVLPNPKQGFILQGDVDPLAPFTWLLRQAGIEAAGPSGLTFHMPTIALNNRGLLLPVDFTATTIAFLAALAAAVLLSVWARARQRRTGAQFPSFRVGLALVVLVPLATFLLTGSPLTFDSPTLKGFNFVGGVAIKPEFMALLVGLSLYTATYIGEIVRAGILAVSWGQTEAAYALGLRRGQALRQVVIPQALRVIIPPLTSQYLNLTKNSSLAVAVGYPDLVSVFAGTTLNQTGQAVEIIFLTMLIYLVISLVTSVLMNIFNRRVALKER

Samples

Sample ID Description Type Environment
1 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
2 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
3 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
4 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
5 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
6 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
7 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
8 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
9 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
10 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
35 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
50 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
51 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
52 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
55 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
56 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
57 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
58 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
60 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
61 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
62 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
63 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
73 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
74 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
75 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
76 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
77 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
78 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
83 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
84 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
85 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
86 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
87 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
91 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
95 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
106 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
115 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
116 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
117 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
121 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
122 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
123 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
124 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
125 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
126 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
127 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
128 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.19
Metatranscriptomes 1.26
Isolates 7.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.14
Nodule 0
Rhizoplane 8.18
Rhizosphere 73.58
Stem 0
Stem Tuber 0
Unclassified 15.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065165_1019243 3300005262 Bacteria 2446
2 Ga0065715_10095350 3300005293 Bacteria 4104
3 Ga0070682_100024648 3300005337 Bacteria 3582
4 Ga0070709_10001903 3300005434 Bacteria 11338
5 Ga0070709_10004305 3300005434 Bacteria 7676
6 Ga0070714_100038125 3300005435 Bacteria 4041
7 Ga0070714_100048132 3300005435 Bacteria 3625
8 Ga0070713_100006881 3300005436 Bacteria 7929
9 Ga0070713_100079539 3300005436 Bacteria 2793
10 Ga0070710_10002420 3300005437 Bacteria 8849
11 Ga0070681_10037934 3300005458 Bacteria 4832
12 Ga0070706_100095646 3300005467 Bacteria 2757
13 Ga0070698_100080183 3300005471 Bacteria 3259
14 Ga0070696_100060479 3300005546 Bacteria 2649
15 Ga0068860_100000738 3300005843 Bacteria 37292
16 Ga0081540_1005936 3300005983 Bacteria 9016
17 Ga0070717_10064288 3300006028 Bacteria 3047
18 Ga0070716_100027835 3300006173 Bacteria 3041
19 Ga0070712_100010489 3300006175 Bacteria 5849
20 Ga0075430_100000043 3300006846 Bacteria 66210
21 Ga0075433_10046132 3300006852 Bacteria 3789
22 Ga0105245_10270634 3300009098 Bacteria 1657
23 Ga0105237_10002443 3300009545 Bacteria 23062
24 Ga0157369_10011845 3300013105 Bacteria 9907
25 Ga0157372_10157767 3300013307 Bacteria 2621
26 Ga0206354_11036963 3300020081 Bacteria 1421
27 Ga0213873_10005763 3300021358 Bacteria 2397
28 Ga0213876_10025016 3300021384 Bacteria 3152
29 Ga0213875_10000393 3300021388 Bacteria 38600
30 Ga0213875_10003797 3300021388 Bacteria 8495
31 Ga0209564_1000598 3300025295 Bacteria 56491
32 Ga0207699_10007281 3300025906 Bacteria 5404
33 Ga0207654_10113860 3300025911 Bacteria 1687
34 Ga0207707_10084739 3300025912 Bacteria 2768
35 Ga0207707_10332462 3300025912 Bacteria 1311
36 Ga0207693_10001194 3300025915 Bacteria 23199
37 Ga0207693_10051219 3300025915 Bacteria 3240
38 Ga0207660_10217120 3300025917 Bacteria 1499
39 Ga0207646_10155000 3300025922 Bacteria 2066
40 Ga0207694_10063161 3300025924 Bacteria 2885
41 Ga0207700_10029651 3300025928 Bacteria 3863
42 Ga0207664_10034500 3300025929 Bacteria 3897
43 Ga0207639_10167443 3300026041 Bacteria 1858
44 Ga0268264_10000043 3300028381 Bacteria 371761
45 Ga0265319_1004514 3300028563 Bacteria 6872
46 Ga0265318_10023461 3300028577 Bacteria 2459
47 Ga0265323_10003732 3300028653 Bacteria 6659
48 Ga0265336_10000296 3300028666 Bacteria 33994
49 Ga0265338_10000423 3300028800 Bacteria 75580
50 Ga0265324_10002418 3300029957 Bacteria 9600
51 Ga0307408_100036068 3300031548 Bacteria 3474
52 Ga0307508_10000001 3300031616 Bacteria 553635
53 Ga0316576_10041505 3300031727 Bacteria 3312
54 Ga0316576_10115484 3300031727 Bacteria 2014
55 Ga0316588_1002359 3300033528 Bacteria 3282
56 Ga0373954_0003650 3300035118 Bacteria 6549
57 Ga0373956_0004169 3300035119 Bacteria 5797
58 Ga0373955_0000862 3300035172 Bacteria 12983
59 Ga0316574_0003270 3300035398 Bacteria 8323
60 Ga0373933_0000911 3300035724 Bacteria 18062
61 Ga0373937_0010534 3300036401 Bacteria 8073
62 Ga0373937_0040418 3300036401 Bacteria 4251
63 Ga0316584_0041389 3300036712 Bacteria 3434
64 Ga0395899_0000013 3300037312 Bacteria 510397
65 Ga0395899_0030646 3300037312 Bacteria 4044
66 Ga0395900_0005074 3300037418 Bacteria 13816
67 Ga0395898_0025852 3300037466 Bacteria 5910
68 Ga0436364_0803305 3300037853 Bacteria 3086
69 Ga0436364_0828807 3300037853 Bacteria 5189
70 Ga0436364_1373616 3300037853 Bacteria 99108
71 Ga0395901_0041897 3300038443 Bacteria 4746
72 Ga0395901_0048219 3300038443 Bacteria 4423
73 Ga0400483_093437 3300039062 Bacteria 26072
74 Ga0436365_1252958 3300039437 Bacteria 2130
75 Ga0436365_1361379 3300039437 Bacteria 4478
76 Ga0436360_0305560 3300039438 Bacteria 1581
77 Ga0436360_0729373 3300039438 Bacteria 4167
78 Ga0436360_1024389 3300039438 Bacteria 1521
79 Ga0436361_1057393 3300039447 Bacteria 3867
80 Ga0436363_0915654 3300039450 Bacteria 1485
81 Ga0436362_1020437 3300039453 Bacteria 3698
82 Ga0439465_0035378 3300041413 Bacteria 1601
83 Ga0466964_0025397 3300044706 Bacteria 2313
84 Ga0453684_0005396 3300044712 Bacteria 25382
85 Ga0451576_0135134 3300045051 Bacteria 2571
86 Ga0466967_0052204 3300045976 Bacteria 3587
87 Ga0466967_0223206 3300045976 Bacteria 1791
88 Ga0495651_0060601 3300046462 Bacteria 2898
89 Ga0495582_0003929 3300046473 Bacteria 8345
90 Ga0495654_0002779 3300046530 Bacteria 11033
91 Ga0495587_0028264 3300046536 Bacteria 3410
92 Ga0495622_0015356 3300046557 Bacteria 3559
93 Ga0495657_0021702 3300046675 Bacteria 4605
94 Ga0495680_0002894 3300047322 Bacteria 17254
95 Ga0495675_0036557 3300047444 Bacteria 3131
96 Ga0496100_0029906 3300048903 Bacteria 3374
97 Ga0496101_0001390 3300048904 Bacteria 14492
98 Ga0496102_0058959 3300048905 Bacteria 3509
99 Ga0496102_0087934 3300048905 Bacteria 2871
100 Ga0496106_0001159 3300048909 Bacteria 19561
101 Ga0496106_0323702 3300048909 Bacteria 1237
102 Ga0496108_0021898 3300048911 Bacteria 5254
103 Ga0496109_0018273 3300048912 Bacteria 6158
104 Ga0496109_0163881 3300048912 Bacteria 2083
105 Ga0496110_0012924 3300048913 Bacteria 6884
106 Ga0496112_0024766 3300048915 Bacteria 5754
107 Ga0496112_0120253 3300048915 Bacteria 2596
108 Ga0496113_0003651 3300048916 Bacteria 9258
109 Ga0496117_0006409 3300048920 Bacteria 11930
110 Ga0496119_0001497 3300048922 Bacteria 27969
111 Ga0496121_0000001 3300048924 Bacteria 1830318
112 Ga0496121_0043057 3300048924 Bacteria 3916
113 Ga0496121_0059936 3300048924 Bacteria 3135
114 Ga0496122_0047086 3300048925 Bacteria 3332
115 Ga0496124_0078054 3300048927 Bacteria 2729
116 Ga0496125_0000001 3300048928 Bacteria 1766138
117 Ga0496126_0025311 3300048929 Bacteria 5712
118 Ga0501031_0028705 3300049568 Bacteria 3627
119 Ga0501032_0008996 3300049569 Bacteria 7261
120 Ga0501033_0011199 3300049570 Bacteria 6870
121 Ga0501034_0044844 3300049571 Bacteria 4470
122 Ga0501034_0293219 3300049571 Bacteria 1564
123 Ga0501036_0024067 3300049572 Bacteria 5133
124 Ga0501038_0023553 3300049574 Bacteria 5502
125 Ga0501038_0055570 3300049574 Bacteria 3400
126 Ga0501038_0067869 3300049574 Bacteria 3033
127 Ga0501039_0030870 3300049575 Bacteria 4132
128 Ga0501047_0012926 3300049581 Bacteria 7907
129 Ga0501067_0042548 3300049583 Bacteria 2522
130 Ga0501070_0014332 3300049586 Bacteria 6672
131 Ga0501070_0075678 3300049586 Bacteria 2787
132 Ga0501073_0002986 3300049589 Bacteria 12681
133 Ga0501073_0016883 3300049589 Bacteria 5287
134 Ga0501080_0046947 3300049742 Bacteria 4020
135 Ga0501035_0018942 3300049822 Bacteria 6339
136 Ga0501044_0007383 3300049823 Bacteria 12088
137 Ga0501044_0037183 3300049823 Bacteria 5089
138 Ga0501044_0125063 3300049823 Bacteria 2569
139 nmdc:mga00v17_25162_c1 3300050491 Bacteria 3458
140 nmdc:mga00v17_27960_c1 3300050491 Bacteria 3297
141 nmdc:mga0qj67_80_c1 3300050509 Bacteria 66211
142 nmdc:mga0a205_231185_c1 3300050515 Bacteria 1732
143 Ga0495612_0042692 3300053078 Bacteria 1852
144 Ga0495595_0001238 3300053084 Bacteria 9939
145 Ga0495619_0005408 3300053085 Bacteria 8093
146 Ga0495619_0036907 3300053085 Bacteria 3184
147 Ga0500556_0000009 3300053104 Bacteria 288111

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049742 Ga0501080_0046947 Ga0501080_0046947_1896_2951 292
2 3300049571 Ga0501034_0293219 Ga0501034_0293219_10_1068 320
3 3300048922 Ga0496119_0001497 Ga0496119_0001497_20018_21145 347
4 3300025912 Ga0207707_10332462 Ga0207707_103324621 349
5 3300039438 Ga0436360_0305560 Ga0436360_0305560_306_1496 350
6 3300021358 Ga0213873_10005763 Ga0213873_100057632 351
7 3300021384 Ga0213876_10025016 Ga0213876_100250162 351
8 3300039437 Ga0436365_1361379 Ga0436365_1361379_2555_3736 351
9 3300039453 Ga0436362_1020437 Ga0436362_1020437_2001_3182 351
10 3300028563 Ga0265319_1004514 Ga0265319_10045145 353
11 3300028577 Ga0265318_10023461 Ga0265318_100234612 353
12 3300028653 Ga0265323_10003732 Ga0265323_100037324 353
13 3300028666 Ga0265336_10000296 Ga0265336_100002967 353
14 3300028800 Ga0265338_10000423 Ga0265338_1000042321 353
15 3300029957 Ga0265324_10002418 Ga0265324_100024184 353
16 3300039437 Ga0436365_1252958 Ga0436365_1252958_27_1175 353
17 3300006846 Ga0075430_100000043 Ga0075430_10000004363 355
18 3300050509 nmdc:mga0qj67_80_c1 nmdc:mga0qj67_80_c1_61558_62832 355
19 3300037312 Ga0395899_0000013 Ga0395899_0000013_325407_326519 356
20 3300033528 Ga0316588_1002359 Ga0316588_10023592 357
21 3300036712 Ga0316584_0041389 Ga0316584_0041389_2123_3229 357
22 3300048903 Ga0496100_0029906 Ga0496100_0029906_286_1413 357
23 3300048904 Ga0496101_0001390 Ga0496101_0001390_5141_6268 357
24 3300048905 Ga0496102_0087934 Ga0496102_0087934_1151_2278 357
25 3300048909 Ga0496106_0001159 Ga0496106_0001159_3755_4882 357
26 3300048911 Ga0496108_0021898 Ga0496108_0021898_2009_3136 357
27 3300048912 Ga0496109_0163881 Ga0496109_0163881_632_1759 357
28 3300048913 Ga0496110_0012924 Ga0496110_0012924_2921_4048 357
29 3300048915 Ga0496112_0120253 Ga0496112_0120253_336_1463 357
30 3300049589 Ga0501073_0016883 Ga0501073_0016883_2450_3628 359
31 3300021388 Ga0213875_10003797 Ga0213875_100037975 362
32 3300037853 Ga0436364_0828807 Ga0436364_0828807_3470_4669 362
33 3300031727 Ga0316576_10041505 Ga0316576_100415053 363
34 3300035398 Ga0316574_0003270 Ga0316574_0003270_456_1637 363
35 3300039447 Ga0436361_1057393 Ga0436361_1057393_638_1816 364
36 3300039450 Ga0436363_0915654 Ga0436363_0915654_32_1222 364
37 3300045976 Ga0466967_0052204 Ga0466967_0052204_1741_2946 364
38 3300048916 Ga0496113_0003651 Ga0496113_0003651_4932_6059 364
39 3300005983 Ga0081540_1005936 Ga0081540_10059366 367
40 3300039438 Ga0436360_1024389 Ga0436360_1024389_186_1367 367
41 3300005435 Ga0070714_100048132 Ga0070714_1000481322 368
42 3300005436 Ga0070713_100079539 Ga0070713_1000795392 368
43 3300025929 Ga0207664_10034500 Ga0207664_100345003 368
44 3300053104 Ga0500556_0000009 Ga0500556_0000009_279658_280848 368
45 3300041413 Ga0439465_0035378 Ga0439465_0035378_390_1532 369
46 3300005843 Ga0068860_100000738 Ga0068860_1000007383 370
47 3300009545 Ga0105237_10002443 Ga0105237_100024439 370
48 3300028381 Ga0268264_10000043 Ga0268264_10000043233 370
49 3300049568 Ga0501031_0028705 Ga0501031_0028705_2166_3455 370
50 3300049569 Ga0501032_0008996 Ga0501032_0008996_70_1359 370
51 3300049570 Ga0501033_0011199 Ga0501033_0011199_1267_2556 370
52 3300049572 Ga0501036_0024067 Ga0501036_0024067_2018_3307 370
53 3300049574 Ga0501038_0055570 Ga0501038_0055570_853_2142 370
54 3300049575 Ga0501039_0030870 Ga0501039_0030870_1020_2309 370
55 3300049581 Ga0501047_0012926 Ga0501047_0012926_4472_5761 370
56 3300049586 Ga0501070_0075678 Ga0501070_0075678_354_1643 370
57 3300049822 Ga0501035_0018942 Ga0501035_0018942_3829_5118 370
58 3300049823 Ga0501044_0037183 Ga0501044_0037183_2566_3855 370
59 3300031616 Ga0307508_10000001 Ga0307508_10000001447 372
60 3300048924 Ga0496121_0043057 Ga0496121_0043057_1410_2615 372
61 3300048924 Ga0496121_0059936 Ga0496121_0059936_633_1838 372
62 3300013105 Ga0157369_10011845 Ga0157369_100118454 373
63 3300020081 Ga0206354_11036963 Ga0206354_110369632 373
64 3300025915 Ga0207693_10051219 Ga0207693_100512192 373
65 3300026041 Ga0207639_10167443 Ga0207639_101674431 373
66 3300005293 Ga0065715_10095350 Ga0065715_100953503 375
67 3300005337 Ga0070682_100024648 Ga0070682_1000246483 375
68 3300005434 Ga0070709_10001903 Ga0070709_100019036 375
69 3300005436 Ga0070713_100006881 Ga0070713_1000068815 375
70 3300005458 Ga0070681_10037934 Ga0070681_100379343 375
71 3300005546 Ga0070696_100060479 Ga0070696_1000604792 375
72 3300006173 Ga0070716_100027835 Ga0070716_1000278352 375
73 3300006175 Ga0070712_100010489 Ga0070712_1000104893 375
74 3300006852 Ga0075433_10046132 Ga0075433_100461323 375
75 3300009098 Ga0105245_10270634 Ga0105245_102706341 375
76 3300025911 Ga0207654_10113860 Ga0207654_101138602 375
77 3300025912 Ga0207707_10084739 Ga0207707_100847392 375
78 3300025915 Ga0207693_10001194 Ga0207693_1000119414 375
79 3300025924 Ga0207694_10063161 Ga0207694_100631612 375
80 3300025928 Ga0207700_10029651 Ga0207700_100296513 375
81 3300046473 Ga0495582_0003929 Ga0495582_0003929_1971_3194 375
82 3300048905 Ga0496102_0058959 Ga0496102_0058959_2012_3205 375
83 3300048909 Ga0496106_0323702 Ga0496106_0323702_16_1209 375
84 3300048929 Ga0496126_0025311 Ga0496126_0025311_2016_3221 375
85 3300050515 nmdc:mga0a205_231185_c1 nmdc:mga0a205_231185_c1_144_1337 375
86 3300037853 Ga0436364_0803305 Ga0436364_0803305_1802_2983 377
87 3300039062 Ga0400483_093437 Ga0400483_093437_6512_7783 377
88 3300048912 Ga0496109_0018273 Ga0496109_0018273_4125_5291 377
89 3300048915 Ga0496112_0024766 Ga0496112_0024766_2785_3951 377
90 3300044712 Ga0453684_0005396 Ga0453684_0005396_15657_16826 378
91 3300045051 Ga0451576_0135134 Ga0451576_0135134_914_2125 378
92 iso_pu_bacteria 2889790730 2889794300 379
93 iso_pu_bacteria 2889914905 2889916741 379
94 iso_pu_bacteria 2919450847 2919455895 381
95 iso_pu_bacteria 8001845381 8001849476 381
96 iso_pu_bacteria 8057160832 8057162429 381
97 3300005435 Ga0070714_100038125 Ga0070714_1000381252 382
98 3300005437 Ga0070710_10002420 Ga0070710_100024209 382
99 3300005467 Ga0070706_100095646 Ga0070706_1000956462 382
100 3300005471 Ga0070698_100080183 Ga0070698_1000801831 382
101 3300006028 Ga0070717_10064288 Ga0070717_100642883 382
102 3300021388 Ga0213875_10000393 Ga0213875_1000039334 382
103 3300025922 Ga0207646_10155000 Ga0207646_101550002 382
104 3300031727 Ga0316576_10115484 Ga0316576_101154841 382
105 3300037853 Ga0436364_1373616 Ga0436364_1373616_37327_38511 382
106 3300039438 Ga0436360_0729373 Ga0436360_0729373_1018_2199 382
107 iso_pu_bacteria 2523231067 2523469057 382
108 iso_pu_bacteria 2738543031 2739347479 382
109 iso_pu_bacteria 2929138655 2929139861 382
110 3300013307 Ga0157372_10157767 Ga0157372_101577673 383
111 3300025917 Ga0207660_10217120 Ga0207660_102171202 383
112 3300037312 Ga0395899_0030646 Ga0395899_0030646_1502_2689 383
113 3300037418 Ga0395900_0005074 Ga0395900_0005074_1521_2708 383
114 3300037466 Ga0395898_0025852 Ga0395898_0025852_2759_3946 383
115 3300038443 Ga0395901_0041897 Ga0395901_0041897_996_2183 383
116 3300038443 Ga0395901_0048219 Ga0395901_0048219_3197_4384 383
117 iso_pu_bacteria 2565956521 2566037582 383
118 iso_pu_bacteria 2648501241 2649121787 383
119 iso_pu_bacteria 2651869818 2652976322 383
120 iso_pu_bacteria 2917554339 2917556162 383
121 3300049571 Ga0501034_0044844 Ga0501034_0044844_2342_3634 384
122 3300049574 Ga0501038_0067869 Ga0501038_0067869_703_1995 384
123 3300049586 Ga0501070_0014332 Ga0501070_0014332_2621_3913 384
124 3300049823 Ga0501044_0125063 Ga0501044_0125063_611_1903 384
125 3300035118 Ga0373954_0003650 Ga0373954_0003650_1806_2999 385
126 3300035119 Ga0373956_0004169 Ga0373956_0004169_1860_3053 385
127 3300035172 Ga0373955_0000862 Ga0373955_0000862_8425_9618 385
128 3300035724 Ga0373933_0000911 Ga0373933_0000911_2518_3711 385
129 3300036401 Ga0373937_0010534 Ga0373937_0010534_4451_5644 385
130 3300036401 Ga0373937_0040418 Ga0373937_0040418_1157_2350 385
131 3300046462 Ga0495651_0060601 Ga0495651_0060601_1014_2207 385
132 3300046536 Ga0495587_0028264 Ga0495587_0028264_1938_3131 385
133 3300046675 Ga0495657_0021702 Ga0495657_0021702_1661_2854 385
134 3300047322 Ga0495680_0002894 Ga0495680_0002894_13903_15096 385
135 3300047444 Ga0495675_0036557 Ga0495675_0036557_86_1279 385
136 3300053078 Ga0495612_0042692 Ga0495612_0042692_643_1836 385
137 3300053084 Ga0495595_0001238 Ga0495595_0001238_1597_2790 385
138 3300053085 Ga0495619_0005408 Ga0495619_0005408_3935_5128 385
139 3300053085 Ga0495619_0036907 Ga0495619_0036907_804_1997 385
140 3300048920 Ga0496117_0006409 Ga0496117_0006409_5971_7164 386
141 3300048924 Ga0496121_0000001 Ga0496121_0000001_1242320_1243513 386
142 3300048927 Ga0496124_0078054 Ga0496124_0078054_178_1371 386
143 3300048928 Ga0496125_0000001 Ga0496125_0000001_1401397_1402590 386
144 3300050491 nmdc:mga00v17_25162_c1 nmdc:mga00v17_25162_c1_1199_2392 386
145 3300046530 Ga0495654_0002779 Ga0495654_0002779_1907_3103 387
146 3300049574 Ga0501038_0023553 Ga0501038_0023553_124_1323 388
147 3300049583 Ga0501067_0042548 Ga0501067_0042548_94_1293 388
148 3300049589 Ga0501073_0002986 Ga0501073_0002986_149_1348 388
149 3300049823 Ga0501044_0007383 Ga0501044_0007383_9057_10256 388
150 3300005262 Ga0065165_1019243 Ga0065165_10192432 390
151 3300005434 Ga0070709_10004305 Ga0070709_100043055 390
152 3300025295 Ga0209564_1000598 Ga0209564_10005984 390
153 3300025906 Ga0207699_10007281 Ga0207699_100072814 390
154 3300031548 Ga0307408_100036068 Ga0307408_1000360682 390
155 3300044706 Ga0466964_0025397 Ga0466964_0025397_1076_2281 390
156 3300045976 Ga0466967_0223206 Ga0466967_0223206_302_1507 390
157 3300046557 Ga0495622_0015356 Ga0495622_0015356_2129_3340 390
158 3300048925 Ga0496122_0047086 Ga0496122_0047086_702_1907 390
159 3300050491 nmdc:mga00v17_27960_c1 nmdc:mga00v17_27960_c1_52_1257 390

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

241

422

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ymu-assembly1.cif.gz_C crystal structure of an amino acid abc transporter complex with arginines and atps 0.8553 87 383
4ymu-assembly1.cif.gz_C crystal structure of an amino acid abc transporter complex with arginines and atps 0.8111 87 383
3dhw-assembly1.cif.gz_B crystal structure of methionine importer metni 0.7899 91 373
3dhw-assembly1.cif.gz_B crystal structure of methionine importer metni 0.7588 91 373
3tuz-assembly2.cif.gz_F inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form 0.702 88 379
ID Description Score Start End Superfamily
af_Q2FX86_270_484_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8784 87 386 1.10.3720.10
af_P52094_1_222_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8711 87 385 1.10.3720.10
4ymsD00 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8644 87 384 1.10.3720.10
af_P0AFT2_3_219_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8622 87 387 1.10.3720.10
af_P0AEQ6_1_218_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8489 87 390 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A7V0XI53-F1-model_v4 Transporter substrate-binding domain-containing protein 0.932 87 384 GO:0015276
GO:0043190
AF-A0A0J6QYZ9-F1-model_v4 deleted 0.9277 87 390
AF-A0A2N2XNG7-F1-model_v4 ABC transporter substrate-binding protein 0.9267 87 384 GO:0006865
GO:0022857
GO:0043190
AF-A0A348UQY6-F1-model_v4 Amino acid ABC transporter 0.9225 87 384 GO:0015276
GO:0043190
AF-A0A7X7TFW8-F1-model_v4 ABC transporter permease subunit 0.9098 87 388 GO:0006865
GO:0022857
GO:0043190

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pLDDT pTM Quality
79.46 0.71 High
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Predicted Structure (AlphaFold2)

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