F232175

General Info

Members Datasets Scaffolds Average Seq Length
159 116 151 276

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10352400|Ga0157374_103524002
Length 314
Sequence MHDNGMTNNMCYFIPKFAYCMIDKMDLFTKTCFGCSKLITNNYSTSFSLGIKAFDKRFRDAIYAIYGFVRYADEIVDTFHNQDKAALIAGFGEETFKAIEQGISLNPVLQSFQVTVNRYRLANELIEAFLRSMEMDLDKTVYTEDGYQQYIYGSAEVIGLMCLRVFCEEDETLYNALLPKARSLGSAFQKINFLRDLRSDFEDRGRMYFPGVNFNHFSESDKKAIEADIKIDFDDALAGIRQLPQGTRLGVYIAYVYYLQLFKKIADTPAAALIQKRIRVPDTQKMALYAKAVLQQKLNMIGSLRCSYFCSRSR

Samples

Sample ID Description Type Environment
1 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
2 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
3 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
4 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
5 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
6 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
7 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
8 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
49 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
50 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
70 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
86 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
87 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
88 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
89 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
92 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
96 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
97 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
107 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
108 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
112 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
115 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
116 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.6
Metatranscriptomes 0
Isolates 4.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.29
Nodule 0
Rhizoplane 0.63
Rhizosphere 84.91
Stem 0
Stem Tuber 0
Unclassified 8.18

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1009696 3300001904 Unclassified 1582
2 rootH2_10001535 3300003320 Bacteria 91957
3 rootH2_10024039 3300003320 Bacteria 38953
4 rootH1_10307517 3300003323 Unclassified 1222
5 rootH1_10318169 3300003323 Bacteria 2647
6 Ga0065714_10074252 3300005288 Bacteria 3064
7 Ga0065704_10174906 3300005289 Bacteria 1269
8 Ga0070676_10001528 3300005328 Bacteria 11703
9 Ga0070683_100140261 3300005329 Bacteria 2290
10 Ga0068868_100045584 3300005338 Bacteria 3430
11 Ga0068868_100052890 3300005338 Bacteria 3198
12 Ga0070660_100106776 3300005339 Bacteria 2224
13 Ga0070673_100020438 3300005364 Bacteria 4777
14 Ga0070673_100650442 3300005364 Bacteria 965
15 Ga0070659_100003735 3300005366 Bacteria 10858
16 Ga0070659_100131504 3300005366 Bacteria 2033
17 Ga0070662_100001673 3300005457 Bacteria 13641
18 Ga0070662_100264702 3300005457 Bacteria 1386
19 Ga0068867_100008600 3300005459 Bacteria 7207
20 Ga0070684_100170910 3300005535 Unclassified 1974
21 Ga0070672_100129226 3300005543 Bacteria 2075
22 Ga0070665_100000178 3300005548 Bacteria 113002
23 Ga0068855_100073326 3300005563 Bacteria 3977
24 Ga0068855_100379533 3300005563 Bacteria 1552
25 Ga0068857_100754041 3300005577 Bacteria 927
26 Ga0068856_100066917 3300005614 Bacteria 3550
27 Ga0068852_100016941 3300005616 Bacteria 5701
28 Ga0068866_10024763 3300005718 Bacteria 2813
29 Ga0075366_10000118 3300006195 Bacteria 32499
30 Ga0075366_10000120 3300006195 Bacteria 32483
31 Ga0097621_100002043 3300006237 Bacteria 13804
32 Ga0068871_100003586 3300006358 Bacteria 10667
33 Ga0075428_100340453 3300006844 Unclassified 1610
34 Ga0068865_100000129 3300006881 Bacteria 39057
35 Ga0105240_10287323 3300009093 Bacteria 1887
36 Ga0105241_10007734 3300009174 Bacteria 7901
37 Ga0105241_10009796 3300009174 Bacteria 7041
38 Ga0105241_10174283 3300009174 Bacteria 1779
39 Ga0105242_10024500 3300009176 Bacteria 4767
40 Ga0105237_10006951 3300009545 Bacteria 12476
41 Ga0105238_10012421 3300009551 Bacteria 8590
42 Ga0105239_10078993 3300010375 Bacteria 3621
43 Ga0105239_10098835 3300010375 Bacteria 3226
44 Ga0157373_10000090 3300013100 Bacteria 78142
45 Ga0157373_10120146 3300013100 Bacteria 1847
46 Ga0157371_10013069 3300013102 Bacteria 6321
47 Ga0157371_10264673 3300013102 Bacteria 1240
48 Ga0157370_10005848 3300013104 Bacteria 13740
49 Ga0157369_10046073 3300013105 Bacteria 4740
50 Ga0157369_10058798 3300013105 Bacteria 4146
51 Ga0157374_10002197 3300013296 Bacteria 16450
52 Ga0157374_10096431 3300013296 Bacteria 2829
53 Ga0157374_10352400 3300013296 Bacteria 1463
54 Ga0157378_10041670 3300013297 Bacteria 4073
55 Ga0157372_10000030 3300013307 Bacteria 179925
56 Ga0157372_10018368 3300013307 Bacteria 7516
57 Ga0157372_10075529 3300013307 Bacteria 3803
58 Ga0157372_10640735 3300013307 Unclassified 1238
59 Ga0157380_10000243 3300014326 Bacteria 32734
60 Ga0157377_10173800 3300014745 Bacteria 1349
61 Ga0209026_1000304 3300025250 Bacteria 53704
62 Ga0207642_10106160 3300025899 Unclassified 1421
63 Ga0207647_10017463 3300025904 Bacteria 4877
64 Ga0207645_10000099 3300025907 Bacteria 64087
65 Ga0207654_10010320 3300025911 Bacteria 4754
66 Ga0207654_10038783 3300025911 Bacteria 2675
67 Ga0207695_10000048 3300025913 Bacteria 421800
68 Ga0207695_10007718 3300025913 Bacteria 13624
69 Ga0207695_10026207 3300025913 Bacteria 6508
70 Ga0207671_10002527 3300025914 Bacteria 19488
71 Ga0207671_10024222 3300025914 Bacteria 4568
72 Ga0207694_10020085 3300025924 Bacteria 5052
73 Ga0207690_10000123 3300025932 Bacteria 64409
74 Ga0207690_10150335 3300025932 Bacteria 1726
75 Ga0207706_10000138 3300025933 Bacteria 79643
76 Ga0207706_10294831 3300025933 Bacteria 1414
77 Ga0207704_10000015 3300025938 Bacteria 163572
78 Ga0207661_10106883 3300025944 Bacteria 2359
79 Ga0207667_10008279 3300025949 Bacteria 12371
80 Ga0207651_10007149 3300025960 Bacteria 5932
81 Ga0207677_10005540 3300026023 Bacteria 6858
82 Ga0207677_10026179 3300026023 Bacteria 3654
83 Ga0207639_10038020 3300026041 Bacteria 3578
84 Ga0207702_10004978 3300026078 Bacteria 11667
85 Ga0207648_10015352 3300026089 Bacteria 7046
86 Ga0207698_10016860 3300026142 Bacteria 4938
87 Ga0268266_10000098 3300028379 Bacteria 182784
88 Ga0307517_10001604 3300028786 Bacteria 37610
89 Ga0307515_10054601 3300028794 Bacteria 5861
90 Ga0307412_10601206 3300031911 Unclassified 931
91 Ga0307414_10054849 3300032004 Bacteria 2787
92 Ga0307411_10009510 3300032005 Bacteria 5116
93 Ga0307510_10012029 3300033180 Bacteria 10257
94 Ga0395899_0000394 3300037312 Bacteria 51861
95 Ga0395899_0106834 3300037312 Bacteria 2015
96 Ga0395900_0001213 3300037418 Bacteria 31865
97 Ga0395900_0062859 3300037418 Bacteria 3816
98 Ga0395898_0133719 3300037466 Bacteria 2375
99 Ga0395905_0002112 3300037471 Bacteria 22578
100 Ga0395901_0001041 3300038443 Bacteria 29939
101 Ga0436361_0995481 3300039447 Bacteria 23100
102 Ga0451577_0011587 3300042876 Bacteria 8331
103 Ga0451577_0161541 3300042876 Bacteria 2017
104 Ga0451577_0588380 3300042876 Unclassified 1010
105 Ga0453683_0038298 3300044673 Bacteria 3014
106 Ga0453684_0002532 3300044712 Bacteria 44022
107 Ga0453684_0002939 3300044712 Bacteria 39971
108 Ga0453684_0017686 3300044712 Bacteria 11015
109 Ga0453684_0025043 3300044712 Bacteria 8683
110 Ga0453684_0268555 3300044712 Bacteria 1951
111 Ga0451576_0012810 3300045051 Bacteria 9410
112 Ga0451576_0035783 3300045051 Bacteria 5266
113 Ga0451576_0036896 3300045051 Bacteria 5179
114 Ga0451576_0068772 3300045051 Bacteria 3685
115 Ga0451576_0098842 3300045051 Unclassified 3035
116 Ga0495638_0000015 3300046460 Bacteria 414645
117 Ga0495583_0105315 3300046506 Bacteria 1200
118 Ga0495606_0005383 3300046507 Bacteria 12275
119 Ga0495631_0004751 3300046518 Bacteria 7174
120 Ga0495668_0155859 3300046616 Bacteria 1251
121 Ga0495625_0182575 3300046660 Bacteria 1394
122 Ga0495649_0017256 3300046694 Bacteria 4075
123 Ga0495683_0034963 3300047323 Bacteria 2554
124 Ga0495686_0000005 3300047472 Bacteria 827143
125 Ga0496115_0124544 3300048918 Bacteria 2122
126 Ga0496125_0000310 3300048928 Bacteria 95700
127 Ga0496126_0112809 3300048929 Bacteria 2367
128 Ga0501031_0008174 3300049568 Bacteria 6809
129 Ga0501032_0017859 3300049569 Bacteria 4977
130 Ga0501033_0000034 3300049570 Bacteria 152329
131 Ga0501034_0000823 3300049571 Bacteria 46187
132 Ga0501034_0008038 3300049571 Bacteria 11191
133 Ga0501036_0023073 3300049572 Bacteria 5237
134 Ga0501037_0003401 3300049573 Bacteria 11573
135 Ga0501038_0024914 3300049574 Bacteria 5332
136 Ga0501039_0001332 3300049575 Bacteria 18060
137 Ga0501043_0000923 3300049579 Bacteria 26062
138 Ga0501198_011046 3300049649 Bacteria 1342
139 Ga0501223_000391 3300049663 Bacteria 10802
140 Ga0501241_000370 3300049758 Bacteria 9874
141 Ga0501035_0002384 3300049822 Bacteria 18456
142 Ga0501044_0012839 3300049823 Bacteria 9069
143 Ga0501045_0000118 3300049824 Bacteria 40712
144 nmdc:mga00v17_266324_c1 3300050491 Bacteria 1112
145 nmdc:mga0k408_189_c1 3300050493 Bacteria 32515
146 nmdc:mga0k408_334635_c1 3300050493 Bacteria 903
147 nmdc:mga0k408_60_c1 3300050493 Bacteria 54928
148 Ga0500608_007801 3300053122 Bacteria 4452
149 Ga0500604_0004533 3300053151 Bacteria 3682
150 Ga0500622_0000003 3300053156 Bacteria 613483
151 Ga0500622_0000008 3300053156 Bacteria 423636

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049663 Ga0501223_000391 Ga0501223_000391_6931_7638 220
2 3300050491 nmdc:mga00v17_266324_c1 nmdc:mga00v17_266324_c1_20_763 244
3 3300050493 nmdc:mga0k408_189_c1 nmdc:mga0k408_189_c1_26277_27020 244
4 3300046506 Ga0495583_0105315 Ga0495583_0105315_21_782 253
5 3300046694 Ga0495649_0017256 Ga0495649_0017256_835_1665 259
6 3300006195 Ga0075366_10000120 Ga0075366_1000012027 260
7 3300050493 nmdc:mga0k408_60_c1 nmdc:mga0k408_60_c1_26573_27403 260
8 3300028786 Ga0307517_10001604 Ga0307517_1000160416 261
9 3300046518 Ga0495631_0004751 Ga0495631_0004751_278_1108 261
10 3300049649 Ga0501198_011046 Ga0501198_011046_189_1034 261
11 3300033180 Ga0307510_10012029 Ga0307510_100120295 262
12 3300046660 Ga0495625_0182575 Ga0495625_0182575_400_1230 262
13 3300047323 Ga0495683_0034963 Ga0495683_0034963_1414_2244 262
14 3300013104 Ga0157370_10005848 Ga0157370_100058484 263
15 3300031911 Ga0307412_10601206 Ga0307412_106012061 263
16 3300044712 Ga0453684_0002939 Ga0453684_0002939_25059_25853 264
17 3300044712 Ga0453684_0268555 Ga0453684_0268555_749_1543 264
18 3300048918 Ga0496115_0124544 Ga0496115_0124544_476_1312 266
19 3300048928 Ga0496125_0000310 Ga0496125_0000310_18543_19379 266
20 3300048929 Ga0496126_0112809 Ga0496126_0112809_561_1397 266
21 3300005289 Ga0065704_10174906 Ga0065704_101749061 269
22 3300049570 Ga0501033_0000034 Ga0501033_0000034_124274_125116 270
23 3300005366 Ga0070659_100003735 Ga0070659_1000037355 271
24 3300005577 Ga0068857_100754041 Ga0068857_1007540411 271
25 3300025932 Ga0207690_10000123 Ga0207690_1000012355 271
26 iso_pu_bacteria 2839989709 2839992394 273
27 iso_pu_bacteria 2852623160 2852625227 273
28 iso_pu_bacteria 2884933994 2884934241 273
29 iso_pu_bacteria 2902048731 2902050000 274
30 iso_pu_bacteria 2911138879 2911139846 274
31 3300049571 Ga0501034_0000823 Ga0501034_0000823_37116_37946 276
32 3300053122 Ga0500608_007801 Ga0500608_007801_875_1705 276
33 iso_pu_bacteria 2739367866 2740033589 276
34 iso_pu_bacteria 2884634485 2884635695 276
35 3300001904 JGI24736J21556_1009696 JGI24736J21556_10096963 277
36 3300003320 rootH2_10001535 rootH2_1000153585 277
37 3300003320 rootH2_10024039 rootH2_1002403921 277
38 3300003323 rootH1_10307517 rootH1_103075171 277
39 3300003323 rootH1_10318169 rootH1_103181692 277
40 3300005288 Ga0065714_10074252 Ga0065714_100742522 277
41 3300005328 Ga0070676_10001528 Ga0070676_100015288 277
42 3300005329 Ga0070683_100140261 Ga0070683_1001402612 277
43 3300005338 Ga0068868_100045584 Ga0068868_1000455843 277
44 3300005338 Ga0068868_100052890 Ga0068868_1000528902 277
45 3300005339 Ga0070660_100106776 Ga0070660_1001067763 277
46 3300005364 Ga0070673_100020438 Ga0070673_1000204384 277
47 3300005364 Ga0070673_100650442 Ga0070673_1006504421 277
48 3300005366 Ga0070659_100131504 Ga0070659_1001315042 277
49 3300005457 Ga0070662_100001673 Ga0070662_1000016739 277
50 3300005457 Ga0070662_100264702 Ga0070662_1002647022 277
51 3300005459 Ga0068867_100008600 Ga0068867_1000086004 277
52 3300005535 Ga0070684_100170910 Ga0070684_1001709101 277
53 3300005543 Ga0070672_100129226 Ga0070672_1001292263 277
54 3300005548 Ga0070665_100000178 Ga0070665_10000017835 277
55 3300005563 Ga0068855_100073326 Ga0068855_1000733263 277
56 3300005563 Ga0068855_100379533 Ga0068855_1003795332 277
57 3300005614 Ga0068856_100066917 Ga0068856_1000669172 277
58 3300005616 Ga0068852_100016941 Ga0068852_1000169414 277
59 3300005718 Ga0068866_10024763 Ga0068866_100247632 277
60 3300006195 Ga0075366_10000118 Ga0075366_1000011836 277
61 3300006237 Ga0097621_100002043 Ga0097621_10000204311 277
62 3300006358 Ga0068871_100003586 Ga0068871_1000035867 277
63 3300006844 Ga0075428_100340453 Ga0075428_1003404532 277
64 3300006881 Ga0068865_100000129 Ga0068865_1000001298 277
65 3300009093 Ga0105240_10287323 Ga0105240_102873232 277
66 3300009174 Ga0105241_10007734 Ga0105241_100077345 277
67 3300009174 Ga0105241_10009796 Ga0105241_100097966 277
68 3300009174 Ga0105241_10174283 Ga0105241_101742832 277
69 3300009176 Ga0105242_10024500 Ga0105242_100245003 277
70 3300009545 Ga0105237_10006951 Ga0105237_1000695110 277
71 3300009551 Ga0105238_10012421 Ga0105238_100124217 277
72 3300010375 Ga0105239_10078993 Ga0105239_100789933 277
73 3300010375 Ga0105239_10098835 Ga0105239_100988353 277
74 3300013100 Ga0157373_10000090 Ga0157373_1000009043 277
75 3300013100 Ga0157373_10120146 Ga0157373_101201462 277
76 3300013102 Ga0157371_10013069 Ga0157371_100130694 277
77 3300013102 Ga0157371_10264673 Ga0157371_102646732 277
78 3300013105 Ga0157369_10046073 Ga0157369_100460733 277
79 3300013105 Ga0157369_10058798 Ga0157369_100587984 277
80 3300013296 Ga0157374_10002197 Ga0157374_1000219713 277
81 3300013296 Ga0157374_10096431 Ga0157374_100964314 277
82 3300013296 Ga0157374_10352400 Ga0157374_103524002 277
83 3300013297 Ga0157378_10041670 Ga0157378_100416704 277
84 3300013307 Ga0157372_10000030 Ga0157372_10000030148 277
85 3300013307 Ga0157372_10018368 Ga0157372_100183685 277
86 3300013307 Ga0157372_10075529 Ga0157372_100755293 277
87 3300013307 Ga0157372_10640735 Ga0157372_106407352 277
88 3300014326 Ga0157380_10000243 Ga0157380_100002439 277
89 3300014745 Ga0157377_10173800 Ga0157377_101738002 277
90 3300025250 Ga0209026_1000304 Ga0209026_100030450 277
91 3300025899 Ga0207642_10106160 Ga0207642_101061602 277
92 3300025904 Ga0207647_10017463 Ga0207647_100174635 277
93 3300025907 Ga0207645_10000099 Ga0207645_1000009935 277
94 3300025911 Ga0207654_10010320 Ga0207654_100103206 277
95 3300025911 Ga0207654_10038783 Ga0207654_100387832 277
96 3300025913 Ga0207695_10000048 Ga0207695_10000048145 277
97 3300025913 Ga0207695_10007718 Ga0207695_1000771811 277
98 3300025913 Ga0207695_10026207 Ga0207695_100262075 277
99 3300025914 Ga0207671_10002527 Ga0207671_100025274 277
100 3300025914 Ga0207671_10024222 Ga0207671_100242223 277
101 3300025924 Ga0207694_10020085 Ga0207694_100200853 277
102 3300025932 Ga0207690_10150335 Ga0207690_101503352 277
103 3300025933 Ga0207706_10000138 Ga0207706_1000013812 277
104 3300025933 Ga0207706_10294831 Ga0207706_102948313 277
105 3300025938 Ga0207704_10000015 Ga0207704_1000001539 277
106 3300025944 Ga0207661_10106883 Ga0207661_101068832 277
107 3300025949 Ga0207667_10008279 Ga0207667_1000827910 277
108 3300025960 Ga0207651_10007149 Ga0207651_100071497 277
109 3300026023 Ga0207677_10005540 Ga0207677_100055406 277
110 3300026023 Ga0207677_10026179 Ga0207677_100261793 277
111 3300026041 Ga0207639_10038020 Ga0207639_100380202 277
112 3300026078 Ga0207702_10004978 Ga0207702_100049785 277
113 3300026089 Ga0207648_10015352 Ga0207648_100153526 277
114 3300026142 Ga0207698_10016860 Ga0207698_100168603 277
115 3300028379 Ga0268266_10000098 Ga0268266_1000009881 277
116 3300028794 Ga0307515_10054601 Ga0307515_100546013 277
117 3300032004 Ga0307414_10054849 Ga0307414_100548492 277
118 3300032005 Ga0307411_10009510 Ga0307411_100095104 277
119 3300032005 Ga0307411_10009510 Ga0307411_100095105 277
120 3300037312 Ga0395899_0000394 Ga0395899_0000394_37539_38393 277
121 3300037312 Ga0395899_0106834 Ga0395899_0106834_1031_1864 277
122 3300037418 Ga0395900_0001213 Ga0395900_0001213_15931_16764 277
123 3300037418 Ga0395900_0062859 Ga0395900_0062859_2286_3119 277
124 3300037466 Ga0395898_0133719 Ga0395898_0133719_792_1625 277
125 3300037471 Ga0395905_0002112 Ga0395905_0002112_16767_17600 277
126 3300038443 Ga0395901_0001041 Ga0395901_0001041_9287_10120 277
127 3300039447 Ga0436361_0995481 Ga0436361_0995481_1252_2085 277
128 3300042876 Ga0451577_0011587 Ga0451577_0011587_947_1789 277
129 3300042876 Ga0451577_0161541 Ga0451577_0161541_585_1427 277
130 3300042876 Ga0451577_0588380 Ga0451577_0588380_103_942 277
131 3300044673 Ga0453683_0038298 Ga0453683_0038298_358_1200 277
132 3300044712 Ga0453684_0002532 Ga0453684_0002532_42581_43423 277
133 3300044712 Ga0453684_0017686 Ga0453684_0017686_1306_2160 277
134 3300044712 Ga0453684_0025043 Ga0453684_0025043_1500_2339 277
135 3300045051 Ga0451576_0012810 Ga0451576_0012810_856_1710 277
136 3300045051 Ga0451576_0035783 Ga0451576_0035783_1303_2139 277
137 3300045051 Ga0451576_0036896 Ga0451576_0036896_2563_3405 277
138 3300045051 Ga0451576_0068772 Ga0451576_0068772_2772_3614 277
139 3300045051 Ga0451576_0098842 Ga0451576_0098842_1088_1921 277
140 3300046460 Ga0495638_0000015 Ga0495638_0000015_275267_276103 277
141 3300046507 Ga0495606_0005383 Ga0495606_0005383_5119_5961 277
142 3300046616 Ga0495668_0155859 Ga0495668_0155859_292_1137 277
143 3300047472 Ga0495686_0000005 Ga0495686_0000005_370974_371807 277
144 3300049568 Ga0501031_0008174 Ga0501031_0008174_3497_4339 277
145 3300049569 Ga0501032_0017859 Ga0501032_0017859_1434_2276 277
146 3300049571 Ga0501034_0008038 Ga0501034_0008038_4399_5241 277
147 3300049572 Ga0501036_0023073 Ga0501036_0023073_3735_4577 277
148 3300049573 Ga0501037_0003401 Ga0501037_0003401_4126_4968 277
149 3300049574 Ga0501038_0024914 Ga0501038_0024914_4386_5228 277
150 3300049575 Ga0501039_0001332 Ga0501039_0001332_70_912 277
151 3300049579 Ga0501043_0000923 Ga0501043_0000923_9062_9904 277
152 3300049758 Ga0501241_000370 Ga0501241_000370_7754_8593 277
153 3300049822 Ga0501035_0002384 Ga0501035_0002384_10915_11757 277
154 3300049823 Ga0501044_0012839 Ga0501044_0012839_4267_5109 277
155 3300049824 Ga0501045_0000118 Ga0501045_0000118_12349_13191 277
156 3300050493 nmdc:mga0k408_334635_c1 nmdc:mga0k408_334635_c1_20_865 277
157 3300053151 Ga0500604_0004533 Ga0500604_0004533_952_1788 277
158 3300053156 Ga0500622_0000003 Ga0500622_0000003_268602_269438 277
159 3300053156 Ga0500622_0000008 Ga0500622_0000008_64285_65121 277

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

40

284

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hd1-assembly1.cif.gz_A crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius 0.8644 3 243
3adz-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp 0.8491 4 271
3acx-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bph-673 0.8489 5 271
4ea1-assembly1.cif.gz_A co-crystal structure of dehydrosqualene synthase (crtm) from s. aureus with sq-109 0.8444 5 271
3vje-assembly2.cif.gz_B crystal structure of the y248a mutant of c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus in complex with zaragozic acid a 0.8426 5 271
ID Description Score Start End Superfamily
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.87 4 268 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8606 5 271 1.10.600.10
4hd1A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8484 3 243 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8311 4 268 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8288 5 271 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A259HJ97-F1-model_v4 Phytoene synthase 1.001 1 111 GO:0008299
AF-A0A1B6CT17-F1-model_v4 Bifunctional lycopene cyclase/phytoene synthase (EC 2.5.1.32) (EC 5.5.1.19) 0.9983 3 264 GO:0004311
GO:0016020
GO:0016117
GO:0016767
GO:0016872
GO:0045436
GO:0051996
GO:0065008
AF-A0A2D5QIT1-F1-model_v4 Phytoene synthase 0.9973 2 269 GO:0004311
GO:0016117
GO:0051996
AF-A0A3B9AKC1-F1-model_v4 Phytoene synthase 0.9971 2 277 GO:0004311
GO:0016117
GO:0051996
AF-A0A7T9HVC1-F1-model_v4 deleted 0.9969 2 277

Feature Viewer

pLDDT pTM Quality
95.51 0.92 High
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Predicted Structure (AlphaFold2)

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