F229184

General Info

Members Datasets Scaffolds Average Seq Length
158 100 158 210

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100079375|Ga0070706_1000793753
Length 199
Sequence VKPQEPIVFAIDDDASMREALSRLFRSIGMRAQIFASAQDFLVFKRPDTPACLVLDVRLPGLSGLDLQRELAAADCAIPIIFITGHGDIPMSVQAMKAGAVEFLTKPFRDQELLDAIHQAIERDCANRKSQAEIVEQREREVLGLVVSGLLNKQIAAKLGTTEFTVKIQRRGVMQKMRAASLAELVRMAEKLGIPSPKD

Samples

Sample ID Description Type Environment
1 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
86 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
87 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
90 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
91 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
99 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
100 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.63
Nodule 0
Rhizoplane 1.9
Rhizosphere 95.57
Stem 0
Stem Tuber 0
Unclassified 1.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25404J52841_10036142 3300003659 Bacteria 1051
2 Ga0065707_10009125 3300005295 Bacteria 3070
3 Ga0068869_100585623 3300005334 Bacteria 941
4 Ga0070668_100254764 3300005347 Bacteria 1458
5 Ga0070669_100665979 3300005353 Bacteria 877
6 Ga0070675_100197953 3300005354 Bacteria 1743
7 Ga0070674_100794229 3300005356 Bacteria 817
8 Ga0070673_100213419 3300005364 Bacteria 1668
9 Ga0070667_100348974 3300005367 Bacteria 1339
10 Ga0070714_100876496 3300005435 Unclassified 871
11 Ga0070713_100495799 3300005436 Bacteria 1152
12 Ga0070694_100394252 3300005444 Bacteria 1082
13 Ga0070708_100003285 3300005445 Bacteria 12629
14 Ga0070708_100020747 3300005445 Bacteria 5547
15 Ga0070708_100036325 3300005445 Bacteria 4297
16 Ga0070708_100036695 3300005445 Bacteria 4275
17 Ga0070708_100590888 3300005445 Bacteria 1047
18 Ga0070663_100439917 3300005455 Bacteria 1073
19 Ga0070706_100079375 3300005467 Bacteria 3037
20 Ga0070706_100107638 3300005467 Bacteria 2593
21 Ga0070706_100290702 3300005467 Bacteria 1525
22 Ga0070706_100491493 3300005467 Bacteria 1142
23 Ga0070707_100117670 3300005468 Bacteria 2579
24 Ga0070698_100021531 3300005471 Bacteria 6752
25 Ga0070698_100038169 3300005471 Bacteria 4949
26 Ga0070698_100582813 3300005471 Bacteria 1059
27 Ga0070699_100003515 3300005518 Bacteria 13851
28 Ga0070699_100036703 3300005518 Bacteria 4239
29 Ga0070699_100086631 3300005518 Bacteria 2734
30 Ga0070699_100248174 3300005518 Bacteria 1590
31 Ga0070699_100307811 3300005518 Bacteria 1422
32 Ga0070697_100035740 3300005536 Bacteria 4010
33 Ga0070697_100080191 3300005536 Bacteria 2688
34 Ga0070697_100106596 3300005536 Bacteria 2331
35 Ga0070697_100271021 3300005536 Bacteria 1455
36 Ga0070672_100035397 3300005543 Bacteria 3796
37 Ga0070695_100077133 3300005545 Bacteria 2195
38 Ga0070704_100519847 3300005549 Bacteria 1036
39 Ga0068857_100050517 3300005577 Bacteria 3688
40 Ga0068857_100295699 3300005577 Bacteria 1492
41 Ga0070702_100240305 3300005615 Bacteria 1222
42 Ga0068864_100578208 3300005618 Unclassified 1088
43 Ga0068861_100092000 3300005719 Bacteria 2395
44 Ga0068863_100453825 3300005841 Bacteria 1258
45 Ga0068860_100241584 3300005843 Bacteria 1757
46 Ga0081455_10060437 3300005937 Bacteria 3195
47 Ga0081538_10066707 3300005981 Bacteria 2015
48 Ga0081540_1018538 3300005983 Bacteria 4264
49 Ga0081539_10000021 3300005985 Bacteria 360643
50 Ga0070717_10048432 3300006028 Bacteria 3486
51 Ga0070716_100447129 3300006173 Unclassified 941
52 Ga0075428_100011432 3300006844 Bacteria 9874
53 Ga0075431_100005935 3300006847 Bacteria 12085
54 Ga0075431_100091966 3300006847 Bacteria 3131
55 Ga0075433_10000944 3300006852 Bacteria 20524
56 Ga0075433_10009650 3300006852 Bacteria 7724
57 Ga0075433_10300808 3300006852 Bacteria 1420
58 Ga0075433_10489918 3300006852 Bacteria 1082
59 Ga0075434_100007710 3300006871 Bacteria 9965
60 Ga0075434_100036973 3300006871 Bacteria 4831
61 Ga0075434_100191390 3300006871 Bacteria 2066
62 Ga0075429_100019528 3300006880 Bacteria 5872
63 Ga0075429_100171542 3300006880 Unclassified 1900
64 Ga0068865_100860556 3300006881 Bacteria 786
65 Ga0075436_100002649 3300006914 Bacteria 12306
66 Ga0075435_100076029 3300007076 Bacteria 2751
67 Ga0111539_10193597 3300009094 Bacteria 2372
68 Ga0114129_10001644 3300009147 Bacteria 30370
69 Ga0114129_10009995 3300009147 Bacteria 13525
70 Ga0114129_10012409 3300009147 Bacteria 12129
71 Ga0114129_10014155 3300009147 Bacteria 11365
72 Ga0114129_10015969 3300009147 Bacteria 10677
73 Ga0114129_10166238 3300009147 Bacteria 3010
74 Ga0114129_10761355 3300009147 Bacteria 1239
75 Ga0105243_10158333 3300009148 Bacteria 1950
76 Ga0105241_10799963 3300009174 Bacteria 868
77 Ga0105242_10128357 3300009176 Bacteria 2185
78 Ga0105242_10582408 3300009176 Bacteria 1078
79 Ga0105237_10690714 3300009545 Bacteria 1027
80 Ga0105237_10998204 3300009545 Bacteria 844
81 Ga0105249_10227762 3300009553 Bacteria 1837
82 Ga0105239_10529843 3300010375 Bacteria 1341
83 Ga0105246_10306144 3300011119 Bacteria 1285
84 Ga0157374_10162854 3300013296 Bacteria 2173
85 Ga0157378_10256613 3300013297 Bacteria 1676
86 Ga0163162_10489657 3300013306 Bacteria 1361
87 Ga0157380_10865058 3300014326 Bacteria 927
88 Ga0157377_10300761 3300014745 Bacteria 1059
89 Ga0163161_10562099 3300017792 Bacteria 936
90 Ga0207684_10013098 3300025910 Bacteria 7178
91 Ga0207684_10049331 3300025910 Bacteria 3571
92 Ga0207646_10067727 3300025922 Bacteria 3187
93 Ga0207646_10321036 3300025922 Bacteria 1399
94 Ga0207664_10295482 3300025929 Bacteria 1424
95 Ga0207686_10179961 3300025934 Bacteria 1499
96 Ga0207709_10000056 3300025935 Bacteria 221962
97 Ga0207689_10134454 3300025942 Bacteria 2036
98 Ga0207651_10306345 3300025960 Bacteria 1323
99 Ga0207651_10756923 3300025960 Bacteria 859
100 Ga0207658_10519991 3300025986 Bacteria 1062
101 Ga0207677_10171087 3300026023 Bacteria 1698
102 Ga0207678_10414367 3300026067 Bacteria 1168
103 Ga0207641_10180386 3300026088 Bacteria 1934
104 Ga0207676_10543101 3300026095 Bacteria 1109
105 Ga0207674_10120533 3300026116 Bacteria 2591
106 Ga0207674_10314051 3300026116 Bacteria 1516
107 Ga0207675_100275073 3300026118 Bacteria 1635
108 Ga0207698_10231106 3300026142 Bacteria 1679
109 Ga0268266_10916601 3300028379 Bacteria 848
110 Ga0268265_10139817 3300028380 Bacteria 2026
111 Ga0268264_10348772 3300028381 Bacteria 1408
112 Ga0307513_10366611 3300031456 Bacteria 1184
113 Ga0373940_0027659 3300035088 Bacteria 1492
114 Ga0395900_0026988 3300037418 Bacteria 5879
115 Ga0395898_0031568 3300037466 Bacteria 5292
116 Ga0395905_0122323 3300037471 Bacteria 2447
117 Ga0395905_0280704 3300037471 Bacteria 1552
118 Ga0395901_0000605 3300038443 Bacteria 41775
119 Ga0436365_1573003 3300039437 Bacteria 2036
120 Ga0436360_0106927 3300039438 Bacteria 1699
121 Ga0436360_0168583 3300039438 Unclassified 1943
122 Ga0436361_0107513 3300039447 Bacteria 827
123 Ga0436361_0958785 3300039447 Bacteria 1872
124 Ga0436361_1016199 3300039447 Bacteria 1251
125 Ga0436362_1048762 3300039453 Bacteria 6814
126 Ga0453683_0002290 3300044673 Bacteria 15099
127 Ga0495669_0043256 3300046684 Bacteria 2005
128 Ga0496102_0199324 3300048905 Bacteria 1887
129 Ga0496109_0657663 3300048912 Bacteria 985
130 Ga0496110_0822492 3300048913 Bacteria 834
131 Ga0496125_0003602 3300048928 Bacteria 18591
132 nmdc:mga05p37_164127_c1 3300050507 Bacteria 2711
133 nmdc:mga05p37_18766_c1 3300050507 Bacteria 8358
134 nmdc:mga05p37_30341_c1 3300050507 Bacteria 6597
135 nmdc:mga05p37_3315_c1 3300050507 Bacteria 18784
136 nmdc:mga05p37_36158_c1 3300050507 Bacteria 6059
137 nmdc:mga05p37_435598_c1 3300050507 Bacteria 1522
138 nmdc:mga05p37_5726_c1 3300050507 Bacteria 14614
139 nmdc:mga05p37_672491_c1 3300050507 Bacteria 1155
140 nmdc:mga05p37_747496_c1 3300050507 Bacteria 1078
141 nmdc:mga05p37_86970_c2 3300050507 Bacteria 3195
142 nmdc:mga09592_133126_c1 3300050508 Bacteria 2140
143 nmdc:mga09592_444191_c1 3300050508 Bacteria 1119
144 nmdc:mga0qj67_496702_c1 3300050509 Bacteria 981
145 nmdc:mga06r32_12233_c1 3300050510 Bacteria 7739
146 nmdc:mga06r32_31734_c1 3300050510 Bacteria 4965
147 nmdc:mga0n895_109489_c1 3300050512 Bacteria 2777
148 nmdc:mga0n895_13900_c1 3300050512 Bacteria 7288
149 nmdc:mga0n895_28683_c1 3300050512 Bacteria 5298
150 nmdc:mga0rr50_21654_c1 3300050513 Bacteria 4394
151 nmdc:mga0rr50_68888_c1 3300050513 Bacteria 2691
152 nmdc:mga0rr50_698302_c1 3300050513 Bacteria 866
153 nmdc:mga08x19_51435_c1 3300050514 Bacteria 2647
154 nmdc:mga0a205_12470_c1 3300050515 Bacteria 7866
155 nmdc:mga0a205_346342_c1 3300050515 Bacteria 1354
156 nmdc:mga0a205_41906_c1 3300050515 Bacteria 4410
157 nmdc:mga0a205_7093_c2 3300050515 Bacteria 7070
158 Ga0500556_0001325 3300053104 Bacteria 11007

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039437 Ga0436365_1573003 Ga0436365_1573003_1314_1853 179
2 3300048905 Ga0496102_0199324 Ga0496102_0199324_35_580 181
3 3300009176 Ga0105242_10582408 Ga0105242_105824082 198
4 3300011119 Ga0105246_10306144 Ga0105246_103061441 198
5 3300013297 Ga0157378_10256613 Ga0157378_102566132 198
6 3300028379 Ga0268266_10916601 Ga0268266_109166011 198
7 3300028380 Ga0268265_10139817 Ga0268265_101398172 198
8 3300005467 Ga0070706_100079375 Ga0070706_1000793753 199
9 3300053104 Ga0500556_0001325 Ga0500556_0001325_357_962 201
10 3300005543 Ga0070672_100035397 Ga0070672_1000353972 202
11 3300006028 Ga0070717_10048432 Ga0070717_100484323 202
12 3300009545 Ga0105237_10690714 Ga0105237_106907142 202
13 3300037471 Ga0395905_0280704 Ga0395905_0280704_928_1542 202
14 3300005334 Ga0068869_100585623 Ga0068869_1005856232 203
15 3300005353 Ga0070669_100665979 Ga0070669_1006659791 203
16 3300005455 Ga0070663_100439917 Ga0070663_1004399172 203
17 3300005577 Ga0068857_100295699 Ga0068857_1002956992 203
18 3300005615 Ga0070702_100240305 Ga0070702_1002403051 203
19 3300009148 Ga0105243_10158333 Ga0105243_101583333 203
20 3300009174 Ga0105241_10799963 Ga0105241_107999631 203
21 3300009545 Ga0105237_10998204 Ga0105237_109982042 203
22 3300010375 Ga0105239_10529843 Ga0105239_105298432 203
23 3300013296 Ga0157374_10162854 Ga0157374_101628542 203
24 3300014326 Ga0157380_10865058 Ga0157380_108650581 203
25 3300014745 Ga0157377_10300761 Ga0157377_103007611 203
26 3300025942 Ga0207689_10134454 Ga0207689_101344545 203
27 3300025960 Ga0207651_10756923 Ga0207651_107569231 203
28 3300026023 Ga0207677_10171087 Ga0207677_101710872 203
29 3300026067 Ga0207678_10414367 Ga0207678_104143672 203
30 3300026116 Ga0207674_10314051 Ga0207674_103140512 203
31 3300048912 Ga0496109_0657663 Ga0496109_0657663_216_827 203
32 3300048913 Ga0496110_0822492 Ga0496110_0822492_32_643 203
33 3300005356 Ga0070674_100794229 Ga0070674_1007942291 204
34 3300006881 Ga0068865_100860556 Ga0068865_1008605561 204
35 3300025935 Ga0207709_10000056 Ga0207709_1000005640 204
36 3300039438 Ga0436360_0106927 Ga0436360_0106927_655_1269 204
37 3300039453 Ga0436362_1048762 Ga0436362_1048762_340_954 204
38 3300046684 Ga0495669_0043256 Ga0495669_0043256_1331_1963 204
39 3300050507 nmdc:mga05p37_747496_c1 nmdc:mga05p37_747496_c1_350_982 204
40 3300026142 Ga0207698_10231106 Ga0207698_102311062 205
41 3300039447 Ga0436361_0107513 Ga0436361_0107513_158_775 205
42 3300048928 Ga0496125_0003602 Ga0496125_0003602_782_1417 205
43 3300005295 Ga0065707_10009125 Ga0065707_100091251 207
44 3300005445 Ga0070708_100036325 Ga0070708_1000363252 207
45 3300050507 nmdc:mga05p37_672491_c1 nmdc:mga05p37_672491_c1_49_672 207
46 3300005354 Ga0070675_100197953 Ga0070675_1001979532 208
47 3300005364 Ga0070673_100213419 Ga0070673_1002134192 208
48 3300005435 Ga0070714_100876496 Ga0070714_1008764961 208
49 3300005436 Ga0070713_100495799 Ga0070713_1004957991 208
50 3300005467 Ga0070706_100107638 Ga0070706_1001076383 208
51 3300005471 Ga0070698_100038169 Ga0070698_1000381692 208
52 3300005471 Ga0070698_100582813 Ga0070698_1005828132 208
53 3300005518 Ga0070699_100086631 Ga0070699_1000866314 208
54 3300005536 Ga0070697_100080191 Ga0070697_1000801913 208
55 3300005536 Ga0070697_100106596 Ga0070697_1001065962 208
56 3300005577 Ga0068857_100050517 Ga0068857_1000505171 208
57 3300005618 Ga0068864_100578208 Ga0068864_1005782082 208
58 3300005937 Ga0081455_10060437 Ga0081455_100604373 208
59 3300005981 Ga0081538_10066707 Ga0081538_100667072 208
60 3300006852 Ga0075433_10009650 Ga0075433_100096505 208
61 3300006852 Ga0075433_10300808 Ga0075433_103008082 208
62 3300006871 Ga0075434_100007710 Ga0075434_1000077106 208
63 3300006871 Ga0075434_100191390 Ga0075434_1001913902 208
64 3300006880 Ga0075429_100171542 Ga0075429_1001715422 208
65 3300009147 Ga0114129_10012409 Ga0114129_100124096 208
66 3300009147 Ga0114129_10014155 Ga0114129_1001415513 208
67 3300009147 Ga0114129_10166238 Ga0114129_101662382 208
68 3300009147 Ga0114129_10761355 Ga0114129_107613552 208
69 3300025910 Ga0207684_10049331 Ga0207684_100493312 208
70 3300025922 Ga0207646_10321036 Ga0207646_103210362 208
71 3300025929 Ga0207664_10295482 Ga0207664_102954822 208
72 3300025960 Ga0207651_10306345 Ga0207651_103063452 208
73 3300026095 Ga0207676_10543101 Ga0207676_105431012 208
74 3300026116 Ga0207674_10120533 Ga0207674_101205331 208
75 3300039438 Ga0436360_0168583 Ga0436360_0168583_1138_1767 208
76 3300039447 Ga0436361_0958785 Ga0436361_0958785_474_1100 208
77 3300044673 Ga0453683_0002290 Ga0453683_0002290_3533_4159 208
78 3300050507 nmdc:mga05p37_164127_c1 nmdc:mga05p37_164127_c1_1940_2566 208
79 3300050507 nmdc:mga05p37_36158_c1 nmdc:mga05p37_36158_c1_1708_2334 208
80 3300050507 nmdc:mga05p37_5726_c1 nmdc:mga05p37_5726_c1_4739_5365 208
81 3300050507 nmdc:mga05p37_86970_c2 nmdc:mga05p37_86970_c2_1302_1928 208
82 3300050508 nmdc:mga09592_133126_c1 nmdc:mga09592_133126_c1_680_1306 208
83 3300050512 nmdc:mga0n895_109489_c1 nmdc:mga0n895_109489_c1_1062_1688 208
84 3300050512 nmdc:mga0n895_28683_c1 nmdc:mga0n895_28683_c1_4491_5117 208
85 3300050515 nmdc:mga0a205_7093_c2 nmdc:mga0a205_7093_c2_1727_2353 208
86 3300005467 Ga0070706_100290702 Ga0070706_1002907021 209
87 3300005518 Ga0070699_100248174 Ga0070699_1002481742 209
88 3300006173 Ga0070716_100447129 Ga0070716_1004471291 209
89 3300050507 nmdc:mga05p37_435598_c1 nmdc:mga05p37_435598_c1_331_1047 209
90 3300003659 JGI25404J52841_10036142 JGI25404J52841_100361421 211
91 3300005347 Ga0070668_100254764 Ga0070668_1002547641 211
92 3300005367 Ga0070667_100348974 Ga0070667_1003489741 211
93 3300005444 Ga0070694_100394252 Ga0070694_1003942522 211
94 3300005445 Ga0070708_100003285 Ga0070708_1000032856 211
95 3300005445 Ga0070708_100020747 Ga0070708_1000207475 211
96 3300005445 Ga0070708_100036695 Ga0070708_1000366952 211
97 3300005445 Ga0070708_100590888 Ga0070708_1005908881 211
98 3300005467 Ga0070706_100491493 Ga0070706_1004914931 211
99 3300005468 Ga0070707_100117670 Ga0070707_1001176703 211
100 3300005471 Ga0070698_100021531 Ga0070698_1000215315 211
101 3300005518 Ga0070699_100003515 Ga0070699_1000035157 211
102 3300005518 Ga0070699_100036703 Ga0070699_1000367032 211
103 3300005518 Ga0070699_100307811 Ga0070699_1003078111 211
104 3300005536 Ga0070697_100035740 Ga0070697_1000357404 211
105 3300005536 Ga0070697_100271021 Ga0070697_1002710213 211
106 3300005545 Ga0070695_100077133 Ga0070695_1000771332 211
107 3300005549 Ga0070704_100519847 Ga0070704_1005198471 211
108 3300005719 Ga0068861_100092000 Ga0068861_1000920002 211
109 3300005841 Ga0068863_100453825 Ga0068863_1004538252 211
110 3300005843 Ga0068860_100241584 Ga0068860_1002415841 211
111 3300005983 Ga0081540_1018538 Ga0081540_10185383 211
112 3300005985 Ga0081539_10000021 Ga0081539_1000002130 211
113 3300006844 Ga0075428_100011432 Ga0075428_1000114327 211
114 3300006847 Ga0075431_100005935 Ga0075431_1000059355 211
115 3300006847 Ga0075431_100091966 Ga0075431_1000919662 211
116 3300006852 Ga0075433_10000944 Ga0075433_100009448 211
117 3300006852 Ga0075433_10489918 Ga0075433_104899182 211
118 3300006871 Ga0075434_100036973 Ga0075434_1000369732 211
119 3300006880 Ga0075429_100019528 Ga0075429_1000195288 211
120 3300006914 Ga0075436_100002649 Ga0075436_1000026499 211
121 3300007076 Ga0075435_100076029 Ga0075435_1000760292 211
122 3300009094 Ga0111539_10193597 Ga0111539_101935972 211
123 3300009147 Ga0114129_10001644 Ga0114129_1000164424 211
124 3300009147 Ga0114129_10009995 Ga0114129_100099956 211
125 3300009147 Ga0114129_10015969 Ga0114129_100159694 211
126 3300009176 Ga0105242_10128357 Ga0105242_101283573 211
127 3300009553 Ga0105249_10227762 Ga0105249_102277621 211
128 3300013306 Ga0163162_10489657 Ga0163162_104896572 211
129 3300017792 Ga0163161_10562099 Ga0163161_105620991 211
130 3300025910 Ga0207684_10013098 Ga0207684_100130982 211
131 3300025922 Ga0207646_10067727 Ga0207646_100677272 211
132 3300025934 Ga0207686_10179961 Ga0207686_101799613 211
133 3300025986 Ga0207658_10519991 Ga0207658_105199912 211
134 3300026088 Ga0207641_10180386 Ga0207641_101803862 211
135 3300026118 Ga0207675_100275073 Ga0207675_1002750732 211
136 3300028381 Ga0268264_10348772 Ga0268264_103487722 211
137 3300031456 Ga0307513_10366611 Ga0307513_103666112 211
138 3300035088 Ga0373940_0027659 Ga0373940_0027659_488_1123 211
139 3300037418 Ga0395900_0026988 Ga0395900_0026988_4540_5193 211
140 3300037466 Ga0395898_0031568 Ga0395898_0031568_3955_4608 211
141 3300037471 Ga0395905_0122323 Ga0395905_0122323_1537_2277 211
142 3300038443 Ga0395901_0000605 Ga0395901_0000605_31953_32606 211
143 3300039447 Ga0436361_1016199 Ga0436361_1016199_516_1151 211
144 3300050507 nmdc:mga05p37_18766_c1 nmdc:mga05p37_18766_c1_5229_5879 211
145 3300050507 nmdc:mga05p37_30341_c1 nmdc:mga05p37_30341_c1_5395_6045 211
146 3300050507 nmdc:mga05p37_3315_c1 nmdc:mga05p37_3315_c1_5209_5919 211
147 3300050508 nmdc:mga09592_444191_c1 nmdc:mga09592_444191_c1_211_954 211
148 3300050509 nmdc:mga0qj67_496702_c1 nmdc:mga0qj67_496702_c1_219_860 211
149 3300050510 nmdc:mga06r32_12233_c1 nmdc:mga06r32_12233_c1_6814_7464 211
150 3300050510 nmdc:mga06r32_31734_c1 nmdc:mga06r32_31734_c1_816_1466 211
151 3300050512 nmdc:mga0n895_13900_c1 nmdc:mga0n895_13900_c1_1527_2177 211
152 3300050513 nmdc:mga0rr50_21654_c1 nmdc:mga0rr50_21654_c1_2346_2996 211
153 3300050513 nmdc:mga0rr50_68888_c1 nmdc:mga0rr50_68888_c1_777_1442 211
154 3300050513 nmdc:mga0rr50_698302_c1 nmdc:mga0rr50_698302_c1_38_676 211
155 3300050514 nmdc:mga08x19_51435_c1 nmdc:mga08x19_51435_c1_599_1249 211
156 3300050515 nmdc:mga0a205_12470_c1 nmdc:mga0a205_12470_c1_2637_3287 211
157 3300050515 nmdc:mga0a205_346342_c1 nmdc:mga0a205_346342_c1_595_1248 211
158 3300050515 nmdc:mga0a205_41906_c1 nmdc:mga0a205_41906_c1_3255_3920 211

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

135

189

0.99

PF00072

Response_reg

Response regulator receiver domain

8

118

0.98

PF06490

FleQ

Flagellar regulatory protein FleQ

7

122

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9797 142 204
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.9785 140 203
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9784 140 204
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9758 140 204
4wul-assembly1.cif.gz_B crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.97 144 204
ID Description Score Start End Superfamily
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9907 143 201 1.10.10.10
af_P52106_149_214_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9775 143 199 1.10.10.10
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9765 143 201 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9656 140 204 1.10.10.10
4if4D02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9655 139 204 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2A2XU91-F1-model_v4 DNA-binding response regulator 0.9609 5 204 GO:0000160
GO:0003677
GO:0006355
AF-Q1LCE9-F1-model_v4 Two component transcriptional regulator, LuxR family 0.9559 5 208 GO:0000160
GO:0006355
AF-A0A7X2IEH3-F1-model_v4 Response regulator transcription factor 0.9534 4 207 GO:0000160
GO:0003677
GO:0006355
AF-A0A4R8IHT5-F1-model_v4 LuxR family two component transcriptional regulator 0.9502 3 202 GO:0000160
GO:0003677
GO:0006355
AF-A0A0Q6V3M6-F1-model_v4 LuxR family transcriptional regulator 0.9479 2 202 GO:0000160
GO:0006355

Feature Viewer

pLDDT pTM Quality
88.17 0.77 High
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Predicted Structure (AlphaFold2)

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