F226034

General Info

Members Datasets Scaffolds Average Seq Length
156 124 312 355

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221587|2643944915
Length 401
Sequence PGLSVRMKLTLSYAGFLAVAGALLLAVVWAFLLRYVPDTSKGLLGISPNRYLLVRTFAPAAAIAMAFLLVFGLVGGWLLAGRMLAPLTRITAAARLAGSGSLSHRVGMEGRRDEFRELADAFDTMLEQLESHVDEQQRFAANASHELRTPLAISQALLDVARRDPTRDRAELLERLQAVNTRAIDLTEALLLLSRSGRGNVTRERVDLSLVAEEAAETLLPLAEQRGITLTVTGGATPVGGSAQLLLRMVTNLVQNAVVHNLPAGPAGPARPARRAGRAGPAGPAGRARPAGQAGPAGPAEPAGGIVTVHTEARGDTGVLRVENTGRPVPPELVPALIEPFRRGTERVRTDEHAGVGLGLAIVQSIVRAHDGTLELVPRPEGGLRVTVRLPGAPSGGEPAR

Samples

Sample ID Description Type Environment
1 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
2 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
6 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
7 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
10 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
11 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
12 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
13 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
14 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
15 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
16 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
21 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
22 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
23 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
24 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
25 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
26 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
27 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
28 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
29 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
30 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
31 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
32 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
33 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
34 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
35 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
36 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
37 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
38 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
39 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
40 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
41 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
42 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
43 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
44 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
45 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
46 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
47 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
48 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
49 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
50 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
51 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
52 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
53 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
54 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
55 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
56 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
57 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
58 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
59 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
60 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
61 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
62 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
66 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
67 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
68 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
69 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
70 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
71 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
72 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
73 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
74 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
87 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
100 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
101 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
102 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
103 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
104 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
105 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
110 2558860280 Kutzneria sp. 744 Isolate Unclassified
111 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
112 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
113 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
114 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
115 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
116 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
117 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
118 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
119 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
120 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
121 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
122 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
123 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
124 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.74
Metatranscriptomes 0
Isolates 10.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.05
Nodule 0
Rhizoplane 8.33
Rhizosphere 65.38
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10005579 3300001990 Bacteria 4336
2 Ga0070671_100012662 3300005355 Bacteria 6799
3 Ga0070714_100122636 3300005435 Bacteria 2313
4 Ga0070713_100032041 3300005436 Bacteria 4194
5 Ga0070663_100008708 3300005455 Bacteria 6255
6 Ga0081538_10017457 3300005981 Bacteria 5446
7 Ga0075364_10004483 3300006051 Bacteria 8044
8 Ga0075364_10032638 3300006051 Bacteria 3348
9 Ga0075367_10032729 3300006178 Bacteria 2993
10 Ga0075366_10000663 3300006195 Bacteria 16198
11 Ga0105245_10126587 3300009098 Bacteria 2392
12 Ga0105245_10169322 3300009098 Bacteria 2079
13 Ga0105237_10273962 3300009545 Bacteria 1690
14 Ga0157370_10226496 3300013104 Bacteria 1731
15 Ga0157372_10283403 3300013307 Bacteria 1927
16 Ga0157372_10305689 3300013307 Bacteria 1850
17 Ga0163161_10095722 3300017792 Bacteria 2203
18 Ga0209758_1005727 3300025297 Bacteria 9364
19 Ga0207680_10000964 3300025903 Bacteria 13587
20 Ga0207664_10002144 3300025929 Bacteria 12981
21 Ga0207644_10003978 3300025931 Bacteria 9599
22 Ga0207678_10000270 3300026067 Bacteria 47047
23 Ga0265318_10042793 3300028577 Bacteria 1718
24 Ga0265336_10032591 3300028666 Bacteria 1616
25 Ga0307517_10007410 3300028786 Bacteria 15998
26 Ga0307515_10000275 3300028794 Bacteria 125944
27 Ga0307515_10013486 3300028794 Bacteria 15269
28 Ga0307511_10000095 3300030521 Bacteria 76051
29 Ga0265340_10080141 3300031247 Bacteria 1538
30 Ga0307513_10002556 3300031456 Bacteria 25135
31 Ga0307513_10034673 3300031456 Bacteria 5659
32 Ga0307516_10050840 3300031730 Bacteria 4064
33 Ga0307516_10128329 3300031730 Bacteria 2318
34 Ga0307412_10238471 3300031911 Bacteria 1405
35 Ga0307409_100107888 3300031995 Bacteria 2327
36 Ga0307416_100024319 3300032002 Bacteria 4418
37 Ga0307416_100072385 3300032002 Bacteria 2869
38 Ga0307415_100040367 3300032126 Bacteria 3091
39 Ga0395900_0148086 3300037418 Bacteria 2400
40 Ga0395898_0001242 3300037466 Bacteria 37957
41 Ga0395898_0183382 3300037466 Bacteria 2000
42 Ga0395905_0192715 3300037471 Bacteria 1912
43 Ga0395901_0105776 3300038443 Bacteria 2954
44 Ga0439439_0000790 3300041406 Bacteria 5745
45 Ga0451853_2586596 3300041512 Bacteria 6065
46 Ga0439433_0020535 3300041999 Bacteria 1475
47 Ga0466965_0103049 3300044683 Bacteria 1461
48 Ga0466966_0012463 3300044684 Bacteria 5632
49 Ga0466966_0066548 3300044684 Bacteria 2264
50 Ga0466961_0015989 3300044693 Bacteria 4817
51 Ga0466971_0144606 3300044719 Bacteria 1108
52 Ga0466968_0028066 3300044735 Bacteria 2319
53 Ga0466970_0000588 3300044765 Bacteria 17795
54 Ga0466970_0011667 3300044765 Bacteria 4483
55 Ga0466970_0080893 3300044765 Bacteria 1756
56 Ga0466957_0003284 3300044842 Bacteria 8859
57 Ga0466958_0054279 3300045836 Bacteria 2430
58 Ga0495629_0001493 3300046459 Bacteria 18395
59 Ga0495629_0001628 3300046459 Bacteria 17645
60 Ga0495639_0002461 3300046475 Bacteria 8091
61 Ga0495662_0010176 3300046476 Bacteria 4609
62 Ga0495594_0081387 3300046499 Bacteria 1808
63 Ga0495630_0023116 3300046517 Bacteria 4594
64 Ga0495657_0102993 3300046675 Bacteria 1816
65 Ga0495613_0008456 3300046689 Bacteria 7636
66 Ga0495613_0027459 3300046689 Bacteria 4235
67 Ga0495672_0004851 3300047320 Bacteria 10836
68 Ga0495676_0027668 3300047321 Bacteria 4858
69 Ga0495680_0004513 3300047322 Bacteria 13304
70 Ga0495686_0101760 3300047472 Bacteria 1732
71 Ga0496105_0068808 3300048908 Bacteria 2925
72 Ga0496108_0052365 3300048911 Bacteria 3420
73 Ga0496108_0179129 3300048911 Bacteria 1835
74 Ga0496109_0040409 3300048912 Bacteria 4225
75 Ga0496109_0062907 3300048912 Bacteria 3394
76 Ga0496109_0120671 3300048912 Bacteria 2442
77 Ga0496110_0019687 3300048913 Bacteria 5686
78 Ga0496110_0299594 3300048913 Bacteria 1464
79 Ga0496111_0041977 3300048914 Bacteria 3283
80 Ga0496111_0081299 3300048914 Bacteria 2365
81 Ga0496114_0070790 3300048917 Bacteria 2930
82 Ga0496115_0000087 3300048918 Bacteria 86513
83 Ga0496115_0169655 3300048918 Bacteria 1805
84 Ga0496117_0010089 3300048920 Bacteria 8672
85 Ga0496118_0011328 3300048921 Bacteria 8718
86 Ga0496119_0001908 3300048922 Bacteria 23881
87 Ga0496119_0007394 3300048922 Bacteria 9908
88 Ga0496120_0046801 3300048923 Bacteria 2498
89 Ga0496122_0000387 3300048925 Bacteria 93665
90 Ga0496123_0000219 3300048926 Bacteria 116445
91 Ga0496124_0005718 3300048927 Bacteria 13856
92 Ga0496125_0060440 3300048928 Bacteria 3045
93 Ga0496125_0072013 3300048928 Bacteria 2696
94 Ga0496126_0061685 3300048929 Bacteria 3367
95 Ga0496126_0143437 3300048929 Bacteria 2053
96 Ga0501031_0063786 3300049568 Bacteria 2400
97 Ga0501031_0103844 3300049568 Bacteria 1855
98 Ga0501032_0014294 3300049569 Bacteria 5622
99 Ga0501033_0037623 3300049570 Bacteria 3621
100 Ga0501033_0057847 3300049570 Bacteria 2864
101 Ga0501034_0002715 3300049571 Bacteria 20849
102 Ga0501034_0039794 3300049571 Bacteria 4761
103 Ga0501036_0004932 3300049572 Bacteria 10786
104 Ga0501037_0064687 3300049573 Bacteria 2665
105 Ga0501038_0012412 3300049574 Bacteria 7787
106 Ga0501039_0067590 3300049575 Bacteria 2775
107 Ga0501042_0274409 3300049578 Bacteria 1217
108 Ga0501043_0003828 3300049579 Bacteria 12376
109 Ga0501043_0005427 3300049579 Bacteria 10302
110 Ga0501047_0087979 3300049581 Bacteria 2983
111 Ga0501048_0217313 3300049582 Bacteria 1355
112 Ga0501067_0017700 3300049583 Bacteria 3945
113 Ga0501068_0015001 3300049584 Bacteria 4441
114 Ga0501070_0006953 3300049586 Bacteria 9624
115 Ga0501070_0012951 3300049586 Bacteria 7029
116 Ga0501070_0026896 3300049586 Bacteria 4825
117 Ga0501071_0029255 3300049587 Bacteria 3887
118 Ga0501071_0104525 3300049587 Bacteria 2090
119 Ga0501072_0217338 3300049588 Bacteria 1523
120 Ga0501073_0154288 3300049589 Bacteria 1592
121 Ga0501074_0108074 3300049590 Bacteria 1991
122 Ga0501074_0114653 3300049590 Bacteria 1928
123 Ga0501079_0102902 3300049741 Bacteria 2215
124 Ga0501079_0124030 3300049741 Bacteria 2009
125 Ga0501080_0093519 3300049742 Bacteria 2792
126 Ga0501083_0007534 3300049744 Bacteria 7713
127 Ga0501035_0002888 3300049822 Bacteria 16562
128 Ga0501035_0038681 3300049822 Bacteria 4319
129 Ga0501044_0003318 3300049823 Bacteria 18133
130 Ga0501045_0300589 3300049824 Bacteria 1195
131 nmdc:mga07m45_35544_c1 3300050496 Bacteria 2771
132 Ga0495655_0005478 3300053083 Bacteria 2245
133 Ga0495595_0092519 3300053084 Bacteria 1452
134 Ga0500566_0003366 3300053094 Bacteria 9546
135 Ga0500660_012109 3300053100 Bacteria 4656
136 Ga0500556_0000569 3300053104 Bacteria 24500
137 Ga0500600_0045265 3300053149 Bacteria 2518
138 Ga0500616_0000641 3300053153 Bacteria 42089
139 Ga0501082_0211800 3300060353 Bacteria 1686
140 Ga0466962_0035366 3300061719 Bacteria 2391
141 2643944915 2643221587 Bacteria 7586415
142 2559423568 2558860280 Bacteria 11429938
143 2644431814 2643221677 Bacteria 7584031
144 2644502556 2643221690 Bacteria 4654705
145 2808846229 2808606359 Bacteria 9866990
146 2812361825 2811994879 Bacteria 9313447
147 2819741852 2818991472 Bacteria 10089953
148 2862180036 2862178590 Bacteria 8583590
149 2918502196 2918501144 Bacteria 8668083
150 2929218873 2929212328 Bacteria 7708288
151 2946064329 2946064051 Bacteria 8957905
152 2995727313 2995726249 Bacteria 3470435
153 8003315642 8003314358 Bacteria 10575343
154 8047713138 8047710418 Bacteria 11023148
155 8053953508 8053945823 Bacteria 8962862
156 8057571311 8057568493 Bacteria 7221719
157 JGI24737J22298_10005579
158 Ga0070671_100012662
159 Ga0070714_100122636
160 Ga0070713_100032041
161 Ga0070663_100008708
162 Ga0081538_10017457
163 Ga0075364_10004483
164 Ga0075364_10032638
165 Ga0075367_10032729
166 Ga0075366_10000663
167 Ga0105245_10126587
168 Ga0105245_10169322
169 Ga0105237_10273962
170 Ga0157370_10226496
171 Ga0157372_10283403
172 Ga0157372_10305689
173 Ga0163161_10095722
174 Ga0209758_1005727
175 Ga0207680_10000964
176 Ga0207664_10002144
177 Ga0207644_10003978
178 Ga0207678_10000270
179 Ga0265318_10042793
180 Ga0265336_10032591
181 Ga0307517_10007410
182 Ga0307515_10000275
183 Ga0307515_10013486
184 Ga0307511_10000095
185 Ga0265340_10080141
186 Ga0307513_10002556
187 Ga0307513_10034673
188 Ga0307516_10050840
189 Ga0307516_10128329
190 Ga0307412_10238471
191 Ga0307409_100107888
192 Ga0307416_100024319
193 Ga0307416_100072385
194 Ga0307415_100040367
195 Ga0395900_0148086
196 Ga0395898_0001242
197 Ga0395898_0183382
198 Ga0395905_0192715
199 Ga0395901_0105776
200 Ga0439439_0000790
201 Ga0451853_2586596
202 Ga0439433_0020535
203 Ga0466965_0103049
204 Ga0466966_0012463
205 Ga0466966_0066548
206 Ga0466961_0015989
207 Ga0466971_0144606
208 Ga0466968_0028066
209 Ga0466970_0000588
210 Ga0466970_0011667
211 Ga0466970_0080893
212 Ga0466957_0003284
213 Ga0466958_0054279
214 Ga0495629_0001493
215 Ga0495629_0001628
216 Ga0495639_0002461
217 Ga0495662_0010176
218 Ga0495594_0081387
219 Ga0495630_0023116
220 Ga0495657_0102993
221 Ga0495613_0008456
222 Ga0495613_0027459
223 Ga0495672_0004851
224 Ga0495676_0027668
225 Ga0495680_0004513
226 Ga0495686_0101760
227 Ga0496105_0068808
228 Ga0496108_0052365
229 Ga0496108_0179129
230 Ga0496109_0040409
231 Ga0496109_0062907
232 Ga0496109_0120671
233 Ga0496110_0019687
234 Ga0496110_0299594
235 Ga0496111_0041977
236 Ga0496111_0081299
237 Ga0496114_0070790
238 Ga0496115_0000087
239 Ga0496115_0169655
240 Ga0496117_0010089
241 Ga0496118_0011328
242 Ga0496119_0001908
243 Ga0496119_0007394
244 Ga0496120_0046801
245 Ga0496122_0000387
246 Ga0496123_0000219
247 Ga0496124_0005718
248 Ga0496125_0060440
249 Ga0496125_0072013
250 Ga0496126_0061685
251 Ga0496126_0143437
252 Ga0501031_0063786
253 Ga0501031_0103844
254 Ga0501032_0014294
255 Ga0501033_0037623
256 Ga0501033_0057847
257 Ga0501034_0002715
258 Ga0501034_0039794
259 Ga0501036_0004932
260 Ga0501037_0064687
261 Ga0501038_0012412
262 Ga0501039_0067590
263 Ga0501042_0274409
264 Ga0501043_0003828
265 Ga0501043_0005427
266 Ga0501047_0087979
267 Ga0501048_0217313
268 Ga0501067_0017700
269 Ga0501068_0015001
270 Ga0501070_0006953
271 Ga0501070_0012951
272 Ga0501070_0026896
273 Ga0501071_0029255
274 Ga0501071_0104525
275 Ga0501072_0217338
276 Ga0501073_0154288
277 Ga0501074_0108074
278 Ga0501074_0114653
279 Ga0501079_0102902
280 Ga0501079_0124030
281 Ga0501080_0093519
282 Ga0501083_0007534
283 Ga0501035_0002888
284 Ga0501035_0038681
285 Ga0501044_0003318
286 Ga0501045_0300589
287 nmdc:mga07m45_35544_c1
288 Ga0495655_0005478
289 Ga0495595_0092519
290 Ga0500566_0003366
291 Ga0500660_012109
292 Ga0500556_0000569
293 Ga0500600_0045265
294 Ga0500616_0000641
295 Ga0501082_0211800
296 Ga0466962_0035366
297 2643944915
298 2559423568
299 2644431814
300 2644502556
301 2808846229
302 2812361825
303 2819741852
304 2862180036
305 2918502196
306 2929218873
307 2946064329
308 2995727313
309 8003315642
310 8047713138
311 8053953508
312 8057571311

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00672

HAMP

HAMP domain

78

131

0.97

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

135

199

0.94

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

241

394

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
3a0z-assembly1.cif.gz_A catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 4: isopropanol, orthorombic) 0.9066 213 365
3a0z-assembly2.cif.gz_B catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 4: isopropanol, orthorombic) 0.8978 213 368
8dx0-assembly2.cif.gz_B vansc ca domain 0.8962 216 365
3cgy-assembly3.cif.gz_C crystal structure of salmonella sensor kinase phoq catalytic domain in complex with radicicol 0.8933 216 364
3a0z-assembly2.cif.gz_B catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 4: isopropanol, orthorombic) 0.892 213 368
ID Description Score Start End Superfamily
af_P30847_309_465_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.917 214 365 3.30.565.10
af_P77485_332_480_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.9169 214 364 3.30.565.10
af_P77485_332_480_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.9053 214 364 3.30.565.10
af_Q2FXN7_398_551_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.9018 212 365 3.30.565.10
af_P9WGK5_228_381_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.9016 214 368 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A558BS17-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8848 135 366 GO:0000155
GO:0000156
GO:0007234
GO:0030295
AF-A0A3M1BQP1-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.874 174 364 GO:0000155
GO:0004721
GO:0005886
GO:0016036
AF-A0A853UCL5-F1-model_v4 deleted 0.869 142 371
AF-A0A521ZUS9-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8644 136 365 GO:0000155
GO:0000156
GO:0007234
GO:0016020
GO:0030295
AF-A0A2T4JQY8-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8627 183 375 GO:0000155

Map