F217353

General Info

Members Datasets Scaffolds Average Seq Length
153 116 306 481

Family's Representative Sequence

Representative Sequence 3300031344|Ga0265316_10000359|Ga0265316_1000035951
Length 545
Sequence MKTFEPSTEYRAVIGFEIHVELATKSKMFGRAANNPDQKEPNMDIDEVNTAQPGTLPVANKEAIRLAAMVGLALNCTIDEWSKFDRKHYFYPDLPKGYQISQYDQPISREGYLDVELAINTTPSANAATPPLQEGNTAVAVSPPGTGGVPRDPSAEALAKVEAGGGGRIKRIGITRAHLEEDAGKNVHPEGLPYSLVDYNRAGCALLEIVTEPEIESGEEAKIFLTELRNIIRYLGASDCDMEKGTMRCEPNISVRKPGETTLPKYKVEVKNINSFKFAEAAINYEIARQTEILKEGKIPKQVTMGWNEKDNCTVEQRSKEEANDYRYFPDPDLPVLQFTKEYLNKLRAEMPELPAQKRKRFSEEYGLPGADVENLVNWKELAGYFEQVVSEIEEWMEQEPGLERNALIKQAANWCLQDFSAMLNSKLINPSDSTVKPENFAELLKLIQQSKVSVSAAKTVFKTMFEKGGEPLSIVSDLGLEQTSDTGAISSAIDKVLAANAKAVTDYKAGAEKSFGFLVGQTMKELKGKGNPQMINELLRKKLS

Samples

Sample ID Description Type Environment
1 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
36 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
56 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
57 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
58 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
59 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
62 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
63 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
64 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
65 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
66 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
67 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
68 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
69 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
70 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
73 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
79 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
83 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
84 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
85 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
92 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
93 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
99 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
108 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
109 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
110 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
111 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
112 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
113 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
114 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
115 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
116 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.8
Nodule 0
Rhizoplane 1.31
Rhizosphere 86.27
Stem 0
Stem Tuber 0
Unclassified 3.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265316_10000359 3300031344 Bacteria 51479
2 JGI24740J21852_10032934 3300001979 Bacteria 1651
3 rootH2_10006847 3300003320 Bacteria 155484
4 rootL2_10381856 3300003322 Bacteria 1901
5 Ga0065715_10090924 3300005293 Bacteria 6309
6 Ga0070680_100007440 3300005336 Bacteria 8353
7 Ga0070689_100072466 3300005340 Bacteria 2692
8 Ga0070689_100076517 3300005340 Bacteria 2622
9 Ga0070667_100000538 3300005367 Bacteria 37780
10 Ga0070708_100002041 3300005445 Bacteria 15543
11 Ga0070706_100011192 3300005467 Bacteria 8329
12 Ga0070706_100014353 3300005467 Bacteria 7321
13 Ga0070707_100102886 3300005468 Bacteria 2767
14 Ga0070679_100003692 3300005530 Bacteria 14022
15 Ga0070679_100032784 3300005530 Bacteria 5141
16 Ga0070665_100006725 3300005548 Bacteria 11685
17 Ga0068855_100000002 3300005563 Bacteria 616881
18 Ga0068855_100012546 3300005563 Bacteria 10227
19 Ga0068857_100008772 3300005577 Bacteria 8758
20 Ga0068856_100165859 3300005614 Bacteria 2220
21 Ga0068864_100053472 3300005618 Bacteria 3484
22 Ga0068863_100010307 3300005841 Bacteria 9082
23 Ga0068858_100109648 3300005842 Bacteria 2577
24 Ga0068860_100001059 3300005843 Bacteria 30348
25 Ga0081455_10000001 3300005937 Bacteria 603871
26 Ga0081455_10023168 3300005937 Bacteria 5782
27 Ga0070717_10099815 3300006028 Bacteria 2463
28 Ga0075365_10000047 3300006038 Bacteria 39360
29 Ga0075364_10026461 3300006051 Bacteria 3701
30 Ga0097621_100000003 3300006237 Bacteria 164830
31 Ga0068871_100000013 3300006358 Bacteria 102533
32 Ga0105240_10000164 3300009093 Bacteria 135111
33 Ga0105240_10000272 3300009093 Bacteria 102351
34 Ga0105240_10005294 3300009093 Bacteria 19262
35 Ga0105240_10103966 3300009093 Bacteria 3449
36 Ga0105241_10046290 3300009174 Bacteria 3303
37 Ga0105237_10000139 3300009545 Bacteria 102251
38 Ga0105238_10037712 3300009551 Bacteria 4912
39 Ga0105032_100005 3300009979 Bacteria 119893
40 Ga0105239_10004097 3300010375 Bacteria 17527
41 Ga0105239_10189954 3300010375 Bacteria 2299
42 Ga0157379_10016895 3300014968 Bacteria 6423
43 Ga0157376_10000139 3300014969 Bacteria 49554
44 Ga0213872_10024224 3300021361 Unclassified 2791
45 Ga0207684_10006445 3300025910 Bacteria 10696
46 Ga0207695_10000201 3300025913 Bacteria 165092
47 Ga0207695_10001161 3300025913 Bacteria 45666
48 Ga0207695_10002395 3300025913 Bacteria 27799
49 Ga0207695_10098295 3300025913 Bacteria 2926
50 Ga0207671_10000120 3300025914 Bacteria 120786
51 Ga0207693_10052896 3300025915 Unclassified 3186
52 Ga0207660_10020061 3300025917 Bacteria 4480
53 Ga0207660_10041325 3300025917 Bacteria 3231
54 Ga0207652_10002343 3300025921 Bacteria 16042
55 Ga0207652_10018465 3300025921 Bacteria 5721
56 Ga0207652_10025489 3300025921 Bacteria 4918
57 Ga0207652_10074433 3300025921 Bacteria 2957
58 Ga0207646_10054724 3300025922 Unclassified 3568
59 Ga0207664_10186091 3300025929 Bacteria 1786
60 Ga0207670_10044097 3300025936 Bacteria 2949
61 Ga0207665_10121155 3300025939 Bacteria 1848
62 Ga0207667_10000005 3300025949 Bacteria 715503
63 Ga0207658_10000464 3300025986 Bacteria 37957
64 Ga0207703_10071391 3300026035 Bacteria 2868
65 Ga0207676_10043907 3300026095 Bacteria 3445
66 Ga0207674_10014079 3300026116 Bacteria 8836
67 Ga0207675_100166530 3300026118 Bacteria 2105
68 Ga0209983_1003583 3300027665 Bacteria 3296
69 Ga0209974_10003860 3300027876 Bacteria 5371
70 Ga0268266_10009373 3300028379 Bacteria 8628
71 Ga0268266_10009981 3300028379 Bacteria 8335
72 Ga0265326_10000303 3300028558 Bacteria 21740
73 Ga0265326_10006413 3300028558 Bacteria 3657
74 Ga0265334_10000049 3300028573 Bacteria 89091
75 Ga0265334_10003503 3300028573 Bacteria 7115
76 Ga0265334_10042771 3300028573 Bacteria 1765
77 Ga0265318_10000020 3300028577 Bacteria 166887
78 Ga0265322_10011247 3300028654 Bacteria 2596
79 Ga0265336_10000047 3300028666 Bacteria 123576
80 Ga0265338_10000003 3300028800 Bacteria 733923
81 Ga0265338_10000039 3300028800 Bacteria 236135
82 Ga0265338_10046753 3300028800 Bacteria 3962
83 Ga0265324_10002299 3300029957 Bacteria 9937
84 Ga0316183_1098265 3300030742 Bacteria 22103
85 Ga0316183_1166784 3300030742 Bacteria 15216
86 Ga0316183_1179740 3300030742 Bacteria 2557
87 Ga0316181_1091006 3300030744 Bacteria 31360
88 Ga0316182_1006876 3300030745 Bacteria 4120
89 Ga0316182_1187982 3300030745 Bacteria 8059
90 Ga0265330_10000011 3300031235 Bacteria 183176
91 Ga0265332_10000079 3300031238 Bacteria 83722
92 Ga0265328_10001957 3300031239 Bacteria 9364
93 Ga0265320_10000043 3300031240 Bacteria 124028
94 Ga0265325_10035072 3300031241 Unclassified 2666
95 Ga0265331_10000035 3300031250 Bacteria 199191
96 Ga0265316_10001283 3300031344 Bacteria 27008
97 Ga0307509_10128662 3300031507 Bacteria 2493
98 Ga0265313_10000010 3300031595 Bacteria 166869
99 Ga0265313_10018239 3300031595 Bacteria 3949
100 Ga0265313_10050271 3300031595 Bacteria 2001
101 Ga0316579_10048684 3300031691 Bacteria 1980
102 Ga0265314_10000094 3300031711 Bacteria 134574
103 Ga0265342_10055914 3300031712 Bacteria 2341
104 Ga0307516_10000078 3300031730 Bacteria 106523
105 Ga0307405_10012194 3300031731 Bacteria 4538
106 Ga0316577_10019316 3300031733 Bacteria 3770
107 Ga0307410_10010637 3300031852 Bacteria 5223
108 Ga0307410_10056062 3300031852 Bacteria 2678
109 Ga0307406_10000001 3300031901 Bacteria 638191
110 Ga0307406_10001552 3300031901 Bacteria 12680
111 Ga0307411_10039821 3300032005 Bacteria 2976
112 Ga0373950_0000128 3300034818 Bacteria 13063
113 Ga0373923_0068376 3300035111 Bacteria 1521
114 Ga0373961_0000529 3300035241 Bacteria 14535
115 Ga0373935_0000122 3300035692 Bacteria 35062
116 Ga0373927_0008128 3300035695 Bacteria 7079
117 Ga0316582_0018039 3300036647 Bacteria 4098
118 Ga0395905_0016720 3300037471 Bacteria 6972
119 Ga0316581_0012076 3300037588 Bacteria 2427
120 Ga0436361_0501855 3300039447 Bacteria 2055
121 Ga0436361_0596349 3300039447 Bacteria 19429
122 Ga0439447_008601 3300041407 Bacteria 3153
123 Ga0439431_0012591 3300041997 Bacteria 1945
124 Ga0439446_0000324 3300042156 Bacteria 9172
125 Ga0451577_0146862 3300042876 Bacteria 2121
126 Ga0453684_0002764 3300044712 Bacteria 41528
127 Ga0453684_0023900 3300044712 Bacteria 8968
128 Ga0453684_0063485 3300044712 Bacteria 4724
129 Ga0453684_0096864 3300044712 Bacteria 3623
130 Ga0453684_0178877 3300044712 Bacteria 2492
131 Ga0451576_0000626 3300045051 Bacteria 73620
132 Ga0451576_0361840 3300045051 Unclassified 1519
133 Ga0495638_0000227 3300046460 Bacteria 77425
134 Ga0495605_0005363 3300046474 Bacteria 7474
135 Ga0495660_0008149 3300046810 Bacteria 6151
136 Ga0496114_0000769 3300048917 Bacteria 23963
137 Ga0496115_0001629 3300048918 Bacteria 16161
138 Ga0501034_0024029 3300049571 Bacteria 6202
139 Ga0501067_0001369 3300049583 Bacteria 13193
140 Ga0501073_0000431 3300049589 Bacteria 28778
141 nmdc:mga00v17_12702_c1 3300050491 Bacteria 4651
142 nmdc:mga0yw44_9_c1 3300050492 Bacteria 178503
143 Ga0500643_006566 3300053087 Bacteria 4842
144 Ga0500644_0000001 3300053088 Bacteria 529637
145 Ga0500641_0004185 3300053096 Bacteria 5093
146 Ga0500650_0000005 3300053098 Bacteria 119336
147 Ga0500562_000001 3300053108 Bacteria 1178987
148 Ga0500569_000006 3300053109 Bacteria 77425
149 Ga0500642_0008755 3300053130 Bacteria 3481
150 Ga0500655_001322 3300053133 Bacteria 4697
151 Ga0500655_003655 3300053133 Bacteria 2771
152 Ga0500577_0000005 3300053142 Bacteria 158177
153 Ga0500616_0000098 3300053153 Bacteria 177051
154 Ga0265316_10000359
155 JGI24740J21852_10032934
156 rootH2_10006847
157 rootL2_10381856
158 Ga0065715_10090924
159 Ga0070680_100007440
160 Ga0070689_100072466
161 Ga0070689_100076517
162 Ga0070667_100000538
163 Ga0070708_100002041
164 Ga0070706_100011192
165 Ga0070706_100014353
166 Ga0070707_100102886
167 Ga0070679_100003692
168 Ga0070679_100032784
169 Ga0070665_100006725
170 Ga0068855_100000002
171 Ga0068855_100012546
172 Ga0068857_100008772
173 Ga0068856_100165859
174 Ga0068864_100053472
175 Ga0068863_100010307
176 Ga0068858_100109648
177 Ga0068860_100001059
178 Ga0081455_10000001
179 Ga0081455_10023168
180 Ga0070717_10099815
181 Ga0075365_10000047
182 Ga0075364_10026461
183 Ga0097621_100000003
184 Ga0068871_100000013
185 Ga0105240_10000164
186 Ga0105240_10000272
187 Ga0105240_10005294
188 Ga0105240_10103966
189 Ga0105241_10046290
190 Ga0105237_10000139
191 Ga0105238_10037712
192 Ga0105032_100005
193 Ga0105239_10004097
194 Ga0105239_10189954
195 Ga0157379_10016895
196 Ga0157376_10000139
197 Ga0213872_10024224
198 Ga0207684_10006445
199 Ga0207695_10000201
200 Ga0207695_10001161
201 Ga0207695_10002395
202 Ga0207695_10098295
203 Ga0207671_10000120
204 Ga0207693_10052896
205 Ga0207660_10020061
206 Ga0207660_10041325
207 Ga0207652_10002343
208 Ga0207652_10018465
209 Ga0207652_10025489
210 Ga0207652_10074433
211 Ga0207646_10054724
212 Ga0207664_10186091
213 Ga0207670_10044097
214 Ga0207665_10121155
215 Ga0207667_10000005
216 Ga0207658_10000464
217 Ga0207703_10071391
218 Ga0207676_10043907
219 Ga0207674_10014079
220 Ga0207675_100166530
221 Ga0209983_1003583
222 Ga0209974_10003860
223 Ga0268266_10009373
224 Ga0268266_10009981
225 Ga0265326_10000303
226 Ga0265326_10006413
227 Ga0265334_10000049
228 Ga0265334_10003503
229 Ga0265334_10042771
230 Ga0265318_10000020
231 Ga0265322_10011247
232 Ga0265336_10000047
233 Ga0265338_10000003
234 Ga0265338_10000039
235 Ga0265338_10046753
236 Ga0265324_10002299
237 Ga0316183_1098265
238 Ga0316183_1166784
239 Ga0316183_1179740
240 Ga0316181_1091006
241 Ga0316182_1006876
242 Ga0316182_1187982
243 Ga0265330_10000011
244 Ga0265332_10000079
245 Ga0265328_10001957
246 Ga0265320_10000043
247 Ga0265325_10035072
248 Ga0265331_10000035
249 Ga0265316_10001283
250 Ga0307509_10128662
251 Ga0265313_10000010
252 Ga0265313_10018239
253 Ga0265313_10050271
254 Ga0316579_10048684
255 Ga0265314_10000094
256 Ga0265342_10055914
257 Ga0307516_10000078
258 Ga0307405_10012194
259 Ga0316577_10019316
260 Ga0307410_10010637
261 Ga0307410_10056062
262 Ga0307406_10000001
263 Ga0307406_10001552
264 Ga0307411_10039821
265 Ga0373950_0000128
266 Ga0373923_0068376
267 Ga0373961_0000529
268 Ga0373935_0000122
269 Ga0373927_0008128
270 Ga0316582_0018039
271 Ga0395905_0016720
272 Ga0316581_0012076
273 Ga0436361_0501855
274 Ga0436361_0596349
275 Ga0439447_008601
276 Ga0439431_0012591
277 Ga0439446_0000324
278 Ga0451577_0146862
279 Ga0453684_0002764
280 Ga0453684_0023900
281 Ga0453684_0063485
282 Ga0453684_0096864
283 Ga0453684_0178877
284 Ga0451576_0000626
285 Ga0451576_0361840
286 Ga0495638_0000227
287 Ga0495605_0005363
288 Ga0495660_0008149
289 Ga0496114_0000769
290 Ga0496115_0001629
291 Ga0501034_0024029
292 Ga0501067_0001369
293 Ga0501073_0000431
294 nmdc:mga00v17_12702_c1
295 nmdc:mga0yw44_9_c1
296 Ga0500643_006566
297 Ga0500644_0000001
298 Ga0500641_0004185
299 Ga0500650_0000005
300 Ga0500562_000001
301 Ga0500569_000006
302 Ga0500642_0008755
303 Ga0500655_001322
304 Ga0500655_003655
305 Ga0500577_0000005
306 Ga0500616_0000098

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02637

GatB_Yqey

GatB domain

401

544

0.98

PF02934

GatB_N

GatB/GatE catalytic domain

12

345

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3kfu-assembly1.cif.gz_I crystal structure of the transamidosome 0.9058 10 405
2g5h-assembly1.cif.gz_B structure of trna-dependent amidotransferase gatcab 0.9008 10 404
4n0i-assembly1.cif.gz_B crystal structure of s. cerevisiae mitochondrial gatfab in complex with glutamine 0.8952 10 304
4n0i-assembly1.cif.gz_B crystal structure of s. cerevisiae mitochondrial gatfab in complex with glutamine 0.8892 10 304
3h0l-assembly2.cif.gz_E structure of trna-dependent amidotransferase gatcab from aquifex aeolicus 0.8867 8 418
ID Description Score Start End Superfamily
af_Q9VCD0_451_513_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9514 425 486 1.10.10.410
af_M0R4L6_495_556_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9445 423 486 1.10.10.410
af_Q99JT1_495_556_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9371 423 486 1.10.10.410
af_Q2FWZ0_412_475_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9326 423 485 1.10.10.410
af_M0R4L6_495_556_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9303 423 486 1.10.10.410
ID Description Score Start End GO Terms
AF-A0A096XMB0-F1-model_v4 Glutamyl-tRNA amidotransferase subunit B 0.9838 159 262 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681
AF-A0A660MAK3-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 0.9788 76 262 GO:0005524
GO:0006412
GO:0016740
GO:0016884
AF-A0A3B0PIM6-F1-model_v4 deleted 0.9756 8 291
AF-A0A258BLK5-F1-model_v4 Glutamyl-tRNA amidotransferase 0.9742 1 227 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681
AF-W0FDS0-F1-model_v4 Glutamyl-tRNA amidotransferase subnunit B 0.972 159 288 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681

Map