F212952

General Info

Members Datasets Scaffolds Average Seq Length
151 112 140 520

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2517572101|2517763536
Length 558
Sequence TAGALPGAASRPVNFADMPELVADAVPDRLAPPQAGDLYRPSFLPDLLIAALGRNPDRPAVYIGDVALTAAEVAAEISRYAQAYASVGLRVGSRTAMLSPNRPEVLFAMGANMITGCRSTSLHPLGSLDDHVYVLTDAEVETLVVDEKFAERAAEYVRRVPTLRQVVTFGSTDLGPNLLELAARFGPKPLKAPDVGPDDVGGLTYTGGTTGKPKGVMGTYRGAAAMTNIQLTEWQWPDEPRFLMCTPLSHAGAAFFIPVLLRGGCLVVLPGFDPGLVIEAIEKYKINSTMLVPTMIYVLLDHPKLATTDVSSLKTIYYGAAAMAPARLVEAIGRFGPIFFQYYGQSESPMTITVLRKEEHDLSRPERLASCGRPVPWVRVALLDEDGNEVPDGEPGEICVRGPLNCGGYWKLPEQTAELFRHGWLHTGDIARRDAEGFLYIVDRKKDMVISGGFNIFPREVEDVLATHPAVAAAAVIGVPDEKWGEAVKAVVVRRPGVTTPEDVLTGELTALVRDRKGSHHAPKTVDYADSIPVSPLGKPDKKALRARYWSDTTRQVN

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2517572101 Frankia sp. DC12 Isolate Nodule
3 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
4 2687453737 Frankia sp. BMG5.36 Isolate Nodule
5 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
6 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
31 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
37 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
40 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
41 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
42 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
43 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
46 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
47 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
50 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
51 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
52 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
53 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
54 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
55 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
56 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
57 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
58 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
59 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
60 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
63 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
64 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
67 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
68 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
69 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
70 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
71 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
72 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
73 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
74 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
75 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
85 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
86 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
87 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
88 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
89 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
90 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
91 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
103 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
104 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
109 8002775197 Frankia nepalensis CN7 Isolate Nodule
110 8002784119 Frankia sp. AgB1.9 Isolate Nodule
111 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
112 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.72
Metatranscriptomes 0
Isolates 7.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.95
Nodule 7.28
Rhizoplane 0.66
Rhizosphere 75.5
Stem 0
Stem Tuber 0
Unclassified 8.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25407J50210_10001543 3300003373 Bacteria 5243
2 Ga0070668_100001423 3300005347 Bacteria 17257
3 Ga0070668_100051030 3300005347 Bacteria 3187
4 Ga0070708_100025475 3300005445 Bacteria 5056
5 Ga0070707_100016963 3300005468 Bacteria 6842
6 Ga0070699_100001746 3300005518 Bacteria 19863
7 Ga0070697_100181687 3300005536 Bacteria 1783
8 Ga0068853_100004394 3300005539 Bacteria 10918
9 Ga0070672_100080820 3300005543 Bacteria 2605
10 Ga0068861_100081269 3300005719 Bacteria 2537
11 Ga0068860_100000260 3300005843 Bacteria 77214
12 Ga0068860_100011000 3300005843 Bacteria 8921
13 Ga0081455_10000653 3300005937 Bacteria 44988
14 Ga0081455_10011637 3300005937 Bacteria 8827
15 Ga0081455_10020511 3300005937 Bacteria 6220
16 Ga0081455_10062889 3300005937 Bacteria 3117
17 Ga0081538_10000054 3300005981 Bacteria 107029
18 Ga0081538_10006221 3300005981 Bacteria 10563
19 Ga0075364_10027957 3300006051 Bacteria 3606
20 Ga0075367_10021988 3300006178 Bacteria 3571
21 Ga0075428_100012364 3300006844 Bacteria 9497
22 Ga0075430_100000584 3300006846 Bacteria 27631
23 Ga0075430_100079978 3300006846 Bacteria 2738
24 Ga0075431_100002267 3300006847 Bacteria 18430
25 Ga0075429_100000239 3300006880 Bacteria 37819
26 Ga0075429_100167978 3300006880 Bacteria 1922
27 Ga0079104_1003536 3300006946 Bacteria 7190
28 Ga0105240_10085396 3300009093 Bacteria 3867
29 Ga0105240_10286330 3300009093 Bacteria 1891
30 Ga0111539_10003122 3300009094 Bacteria 21944
31 Ga0111539_10060270 3300009094 Bacteria 4497
32 Ga0114129_10000630 3300009147 Bacteria 43905
33 Ga0114129_10027707 3300009147 Bacteria 8022
34 Ga0163163_10127635 3300014325 Bacteria 2582
35 Ga0163161_10008175 3300017792 Bacteria 7236
36 Ga0209758_1000878 3300025297 Bacteria 41328
37 Ga0207691_10065253 3300025940 Bacteria 3296
38 Ga0207667_10021779 3300025949 Bacteria 7096
39 Ga0207668_10048501 3300025972 Bacteria 2915
40 Ga0207639_10009640 3300026041 Bacteria 6671
41 Ga0207675_100141630 3300026118 Bacteria 2284
42 Ga0207428_10056108 3300027907 Bacteria 3130
43 Ga0207428_10117590 3300027907 Bacteria 2040
44 Ga0268265_10003718 3300028380 Bacteria 10851
45 Ga0268264_10000169 3300028381 Bacteria 144978
46 Ga0268264_10007753 3300028381 Bacteria 8938
47 Ga0265334_10000018 3300028573 Bacteria 146753
48 Ga0307511_10000380 3300030521 Bacteria 47301
49 Ga0265327_10013928 3300031251 Bacteria 5302
50 Ga0265327_10016830 3300031251 Bacteria 4621
51 Ga0307513_10022833 3300031456 Bacteria 7340
52 Ga0307513_10029760 3300031456 Bacteria 6217
53 Ga0307409_100019610 3300031995 Bacteria 4584
54 Ga0307416_100019431 3300032002 Bacteria 4817
55 Ga0307414_10023791 3300032004 Bacteria 3893
56 Ga0316574_0013006 3300035398 Bacteria 4775
57 Ga0316574_0041000 3300035398 Bacteria 2852
58 Ga0373927_0002257 3300035695 Bacteria 14123
59 Ga0373937_0116150 3300036401 Bacteria 2492
60 Ga0316584_0032699 3300036712 Bacteria 3851
61 Ga0373925_0000478 3300037068 Bacteria 39975
62 Ga0436365_1105435 3300039437 Bacteria 10068
63 Ga0436365_1407567 3300039437 Bacteria 17189
64 Ga0451841_0249443 3300041498 Bacteria 3469
65 Ga0451849_0254686 3300041505 Bacteria 1999
66 Ga0439448_0006900 3300042005 Bacteria 3275
67 Ga0439450_001072 3300042008 Bacteria 3869
68 Ga0439454_000813 3300042011 Bacteria 2718
69 Ga0439464_0009487 3300042439 Bacteria 2562
70 Ga0439460_0007689 3300042461 Bacteria 2702
71 Ga0439440_0001165 3300042993 Bacteria 4716
72 Ga0466966_0010845 3300044684 Bacteria 6055
73 Ga0466967_0054367 3300045976 Bacteria 3523
74 Ga0495638_0013122 3300046460 Bacteria 5655
75 Ga0495607_0025570 3300046501 Bacteria 3670
76 Ga0495610_0081843 3300046512 Bacteria 1481
77 Ga0495586_0031558 3300046535 Bacteria 2839
78 Ga0495625_0011689 3300046660 Bacteria 7140
79 Ga0495625_0067133 3300046660 Bacteria 2525
80 Ga0495683_0003407 3300047323 Bacteria 9278
81 Ga0495687_000724 3300047443 Bacteria 36493
82 Ga0496112_0013761 3300048915 Bacteria 7482
83 Ga0496116_0001952 3300048919 Bacteria 22226
84 Ga0496117_0013108 3300048920 Bacteria 7256
85 Ga0496118_0004684 3300048921 Bacteria 16031
86 Ga0496119_0007567 3300048922 Bacteria 9749
87 Ga0496121_0000488 3300048924 Bacteria 76655
88 Ga0496121_0071229 3300048924 Bacteria 2796
89 Ga0501034_0031101 3300049571 Bacteria 5425
90 Ga0501034_0082343 3300049571 Bacteria 3220
91 Ga0501036_0027824 3300049572 Bacteria 4779
92 Ga0501036_0057837 3300049572 Bacteria 3285
93 Ga0501038_0018152 3300049574 Bacteria 6354
94 Ga0501039_0004327 3300049575 Bacteria 10707
95 Ga0501040_0036490 3300049576 Bacteria 3337
96 Ga0501041_0032142 3300049577 Bacteria 3172
97 Ga0501041_0038589 3300049577 Bacteria 2896
98 Ga0501042_0052575 3300049578 Bacteria 2905
99 Ga0501047_0039082 3300049581 Bacteria 4591
100 Ga0501047_0073239 3300049581 Bacteria 3298
101 Ga0501048_0007269 3300049582 Bacteria 8401
102 Ga0501071_0002138 3300049587 Bacteria 11868
103 Ga0501072_0000997 3300049588 Bacteria 20930
104 Ga0501074_0032842 3300049590 Bacteria 3760
105 Ga0501075_0001175 3300049591 Bacteria 16942
106 Ga0501075_0201738 3300049591 Bacteria 1517
107 Ga0501249_005180 3300049679 Bacteria 2662
108 Ga0501080_0090357 3300049742 Bacteria 2845
109 Ga0501080_0144183 3300049742 Bacteria 2201
110 Ga0501080_0157226 3300049742 Bacteria 2100
111 Ga0501081_0003968 3300049743 Bacteria 9484
112 Ga0501083_0001154 3300049744 Bacteria 17779
113 Ga0501035_0097257 3300049822 Bacteria 2586
114 Ga0501044_0061553 3300049823 Bacteria 3840
115 Ga0501045_0001046 3300049824 Bacteria 18220
116 Ga0501045_0008569 3300049824 Bacteria 7127
117 Ga0501045_0062825 3300049824 Bacteria 2725
118 nmdc:mga00v17_18158_c1 3300050491 Bacteria 3991
119 nmdc:mga07m45_1451_c1 3300050496 Bacteria 10875
120 nmdc:mga05p37_1834_c1 3300050507 Bacteria 24768
121 nmdc:mga05p37_66781_c1 3300050507 Bacteria 4424
122 nmdc:mga09592_101026_c1 3300050508 Bacteria 2471
123 nmdc:mga09592_2630_c1 3300050508 Bacteria 14530
124 nmdc:mga0qj67_3741_c1 3300050509 Bacteria 10984
125 nmdc:mga0qj67_58668_c1 3300050509 Bacteria 3051
126 nmdc:mga06r32_170733_c1 3300050510 Bacteria 2159
127 nmdc:mga06r32_21639_c1 3300050510 Bacteria 5938
128 nmdc:mga08y16_49848_c1 3300050511 Bacteria 4381
129 nmdc:mga08y16_64248_c1 3300050511 Bacteria 3833
130 Ga0500643_008062 3300053087 Bacteria 4173
131 Ga0500595_008243 3300053119 Bacteria 4267
132 Ga0500595_036842 3300053119 Bacteria 1599
133 Ga0500617_017266 3300053124 Bacteria 3126
134 Ga0500616_0000344 3300053153 Bacteria 66183
135 Ga0500622_0000136 3300053156 Bacteria 78059
136 Ga0500622_0002751 3300053156 Bacteria 12397
137 Ga0501084_0002109 3300054114 Bacteria 15892
138 Ga0501084_0014087 3300054114 Bacteria 6621
139 Ga0530510_0001342 3300061734 Bacteria 16461
140 Ga0530510_0083447 3300061734 Bacteria 2327

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046512 Ga0495610_0081843 Ga0495610_0081843_159_1442 427
2 3300049591 Ga0501075_0201738 Ga0501075_0201738_14_1315 430
3 3300049577 Ga0501041_0032142 Ga0501041_0032142_166_1491 438
4 3300005445 Ga0070708_100025475 Ga0070708_1000254752 453
5 3300005518 Ga0070699_100001746 Ga0070699_1000017465 453
6 3300036712 Ga0316584_0032699 Ga0316584_0032699_2374_3813 476
7 3300035695 Ga0373927_0002257 Ga0373927_0002257_4331_5911 481
8 3300037068 Ga0373925_0000478 Ga0373925_0000478_8236_9816 481
9 3300042011 Ga0439454_000813 Ga0439454_000813_1236_2705 489
10 3300049742 Ga0501080_0157226 Ga0501080_0157226_12_1496 494
11 3300048924 Ga0496121_0071229 Ga0496121_0071229_51_1619 497
12 3300048919 Ga0496116_0001952 Ga0496116_0001952_16993_18615 501
13 3300048920 Ga0496117_0013108 Ga0496117_0013108_2147_3769 501
14 3300048921 Ga0496118_0004684 Ga0496118_0004684_634_2256 501
15 3300047323 Ga0495683_0003407 Ga0495683_0003407_767_2341 505
16 3300048922 Ga0496119_0007567 Ga0496119_0007567_3518_5140 505
17 3300047443 Ga0495687_000724 Ga0495687_000724_19972_21501 507
18 iso_pu_bacteria 2687453737 2689958386 507
19 3300061734 Ga0530510_0083447 Ga0530510_0083447_523_2097 508
20 3300006051 Ga0075364_10027957 Ga0075364_100279573 511
21 3300006178 Ga0075367_10021988 Ga0075367_100219883 511
22 3300025940 Ga0207691_10065253 Ga0207691_100652532 511
23 3300035398 Ga0316574_0041000 Ga0316574_0041000_1055_2602 512
24 3300006946 Ga0079104_1003536 Ga0079104_10035365 513
25 3300049581 Ga0501047_0039082 Ga0501047_0039082_974_2518 513
26 3300049744 Ga0501083_0001154 Ga0501083_0001154_3676_5220 513
27 3300050491 nmdc:mga00v17_18158_c1 nmdc:mga00v17_18158_c1_1431_3029 513
28 3300054114 Ga0501084_0002109 Ga0501084_0002109_12507_14051 513
29 3300028573 Ga0265334_10000018 Ga0265334_10000018109 514
30 3300048924 Ga0496121_0000488 Ga0496121_0000488_16881_18428 514
31 3300049679 Ga0501249_005180 Ga0501249_005180_973_2532 514
32 iso_pu_bacteria 8002784119 8002789042 515
33 iso_pu_bacteria 8055157932 8055161981 515
34 3300005347 Ga0070668_100001423 Ga0070668_10000142317 516
35 3300005719 Ga0068861_100081269 Ga0068861_1000812692 516
36 3300005843 Ga0068860_100011000 Ga0068860_1000110008 516
37 3300025297 Ga0209758_1000878 Ga0209758_100087816 516
38 3300026118 Ga0207675_100141630 Ga0207675_1001416301 516
39 3300028380 Ga0268265_10003718 Ga0268265_100037187 516
40 3300028381 Ga0268264_10007753 Ga0268264_100077532 516
41 3300053156 Ga0500622_0002751 Ga0500622_0002751_308_1861 516
42 iso_pu_bacteria 8002775197 8002778105 516
43 3300030521 Ga0307511_10000380 Ga0307511_1000038011 517
44 3300041498 Ga0451841_0249443 Ga0451841_0249443_125_1681 517
45 3300041505 Ga0451849_0254686 Ga0451849_0254686_366_1922 517
46 3300046460 Ga0495638_0013122 Ga0495638_0013122_936_2492 517
47 3300046660 Ga0495625_0011689 Ga0495625_0011689_1426_2982 517
48 3300046660 Ga0495625_0067133 Ga0495625_0067133_682_2238 517
49 3300050496 nmdc:mga07m45_1451_c1 nmdc:mga07m45_1451_c1_38_1594 517
50 3300053087 Ga0500643_008062 Ga0500643_008062_1709_3265 517
51 3300053119 Ga0500595_036842 Ga0500595_036842_17_1573 517
52 3300053156 Ga0500622_0000136 Ga0500622_0000136_49798_51354 517
53 3300005937 Ga0081455_10062889 Ga0081455_100628892 518
54 3300006844 Ga0075428_100012364 Ga0075428_1000123643 518
55 3300006846 Ga0075430_100000584 Ga0075430_10000058420 518
56 3300006846 Ga0075430_100079978 Ga0075430_1000799782 518
57 3300006847 Ga0075431_100002267 Ga0075431_1000022675 518
58 3300006880 Ga0075429_100000239 Ga0075429_10000023929 518
59 3300009094 Ga0111539_10060270 Ga0111539_100602703 518
60 3300009147 Ga0114129_10000630 Ga0114129_100006308 518
61 3300031251 Ga0265327_10013928 Ga0265327_100139282 518
62 3300036401 Ga0373937_0116150 Ga0373937_0116150_541_2100 518
63 3300046535 Ga0495586_0031558 Ga0495586_0031558_783_2342 518
64 3300050507 nmdc:mga05p37_1834_c1 nmdc:mga05p37_1834_c1_12644_14212 518
65 3300050508 nmdc:mga09592_2630_c1 nmdc:mga09592_2630_c1_2151_3719 518
66 3300050509 nmdc:mga0qj67_3741_c1 nmdc:mga0qj67_3741_c1_485_2053 518
67 3300050509 nmdc:mga0qj67_58668_c1 nmdc:mga0qj67_58668_c1_463_2022 518
68 3300050510 nmdc:mga06r32_21639_c1 nmdc:mga06r32_21639_c1_2279_3847 518
69 3300050511 nmdc:mga08y16_49848_c1 nmdc:mga08y16_49848_c1_1471_3030 518
70 iso_pu_bacteria 8004212874 8004213374 518
71 3300005843 Ga0068860_100000260 Ga0068860_10000026020 519
72 3300028381 Ga0268264_10000169 Ga0268264_1000016964 519
73 3300032004 Ga0307414_10023791 Ga0307414_100237913 519
74 3300049581 Ga0501047_0073239 Ga0501047_0073239_174_1736 519
75 3300049742 Ga0501080_0144183 Ga0501080_0144183_203_1765 519
76 3300049822 Ga0501035_0097257 Ga0501035_0097257_177_1739 519
77 3300005468 Ga0070707_100016963 Ga0070707_1000169633 520
78 3300005536 Ga0070697_100181687 Ga0070697_1001816871 520
79 3300053119 Ga0500595_008243 Ga0500595_008243_1126_2694 520
80 3300005347 Ga0070668_100051030 Ga0070668_1000510303 521
81 3300005539 Ga0068853_100004394 Ga0068853_1000043943 521
82 3300005543 Ga0070672_100080820 Ga0070672_1000808201 521
83 3300014325 Ga0163163_10127635 Ga0163163_101276352 521
84 3300017792 Ga0163161_10008175 Ga0163161_100081754 521
85 3300025949 Ga0207667_10021779 Ga0207667_100217797 521
86 3300025972 Ga0207668_10048501 Ga0207668_100485012 521
87 3300026041 Ga0207639_10009640 Ga0207639_100096404 521
88 3300031251 Ga0265327_10016830 Ga0265327_100168303 521
89 3300039437 Ga0436365_1105435 Ga0436365_1105435_6829_8403 521
90 3300039437 Ga0436365_1407567 Ga0436365_1407567_13263_14828 521
91 3300048915 Ga0496112_0013761 Ga0496112_0013761_537_2102 521
92 3300049571 Ga0501034_0082343 Ga0501034_0082343_1069_2643 521
93 3300049572 Ga0501036_0057837 Ga0501036_0057837_936_2510 521
94 3300049576 Ga0501040_0036490 Ga0501040_0036490_425_1999 521
95 3300049824 Ga0501045_0008569 Ga0501045_0008569_4010_5584 521
96 3300049824 Ga0501045_0062825 Ga0501045_0062825_946_2520 521
97 3300053124 Ga0500617_017266 Ga0500617_017266_130_1743 521
98 3300031456 Ga0307513_10029760 Ga0307513_100297602 522
99 3300049571 Ga0501034_0031101 Ga0501034_0031101_801_2402 522
100 3300049823 Ga0501044_0061553 Ga0501044_0061553_88_1689 522
101 3300053153 Ga0500616_0000344 Ga0500616_0000344_45924_47525 522
102 3300009093 Ga0105240_10085396 Ga0105240_100853965 523
103 3300009093 Ga0105240_10286330 Ga0105240_102863302 523
104 3300031456 Ga0307513_10022833 Ga0307513_100228333 523
105 3300035398 Ga0316574_0013006 Ga0316574_0013006_898_2478 523
106 3300046501 Ga0495607_0025570 Ga0495607_0025570_178_1752 523
107 iso_pu_bacteria 8002775197 8002780172 523
108 iso_pu_bacteria 2508501039 2508676136 524
109 iso_pu_bacteria 2517572101 2517763536 524
110 iso_pu_bacteria 2675902999 2676205576 524
111 iso_pu_bacteria 2773857921 2774850151 524
112 iso_pu_bacteria 8002784119 8002789370 524
113 3300006880 Ga0075429_100167978 Ga0075429_1001679782 525
114 3300044684 Ga0466966_0010845 Ga0466966_0010845_782_2377 525
115 3300045976 Ga0466967_0054367 Ga0466967_0054367_1927_3507 525
116 3300003373 JGI25407J50210_10001543 JGI25407J50210_100015433 526
117 3300005937 Ga0081455_10000653 Ga0081455_100006535 526
118 3300005937 Ga0081455_10011637 Ga0081455_100116375 526
119 3300005937 Ga0081455_10020511 Ga0081455_100205114 526
120 3300005981 Ga0081538_10000054 Ga0081538_1000005434 526
121 3300005981 Ga0081538_10006221 Ga0081538_100062214 526
122 3300009094 Ga0111539_10003122 Ga0111539_1000312219 526
123 3300009147 Ga0114129_10027707 Ga0114129_100277074 526
124 3300027907 Ga0207428_10056108 Ga0207428_100561081 526
125 3300027907 Ga0207428_10117590 Ga0207428_101175901 526
126 3300031995 Ga0307409_100019610 Ga0307409_1000196103 526
127 3300032002 Ga0307416_100019431 Ga0307416_1000194315 526
128 3300042005 Ga0439448_0006900 Ga0439448_0006900_949_2529 526
129 3300042008 Ga0439450_001072 Ga0439450_001072_1967_3547 526
130 3300042439 Ga0439464_0009487 Ga0439464_0009487_667_2247 526
131 3300042461 Ga0439460_0007689 Ga0439460_0007689_187_1767 526
132 3300042993 Ga0439440_0001165 Ga0439440_0001165_862_2442 526
133 3300049572 Ga0501036_0027824 Ga0501036_0027824_1762_3342 526
134 3300049574 Ga0501038_0018152 Ga0501038_0018152_4342_5922 526
135 3300049575 Ga0501039_0004327 Ga0501039_0004327_7281_8861 526
136 3300049577 Ga0501041_0038589 Ga0501041_0038589_1206_2786 526
137 3300049578 Ga0501042_0052575 Ga0501042_0052575_1178_2758 526
138 3300049582 Ga0501048_0007269 Ga0501048_0007269_5645_7225 526
139 3300049587 Ga0501071_0002138 Ga0501071_0002138_9463_11043 526
140 3300049588 Ga0501072_0000997 Ga0501072_0000997_7576_9156 526
141 3300049590 Ga0501074_0032842 Ga0501074_0032842_1791_3371 526
142 3300049591 Ga0501075_0001175 Ga0501075_0001175_10031_11611 526
143 3300049742 Ga0501080_0090357 Ga0501080_0090357_428_2008 526
144 3300049743 Ga0501081_0003968 Ga0501081_0003968_6888_8468 526
145 3300049824 Ga0501045_0001046 Ga0501045_0001046_9732_11312 526
146 3300050507 nmdc:mga05p37_66781_c1 nmdc:mga05p37_66781_c1_2252_3850 526
147 3300050508 nmdc:mga09592_101026_c1 nmdc:mga09592_101026_c1_344_1942 526
148 3300050510 nmdc:mga06r32_170733_c1 nmdc:mga06r32_170733_c1_482_2080 526
149 3300050511 nmdc:mga08y16_64248_c1 nmdc:mga08y16_64248_c1_1613_3211 526
150 3300054114 Ga0501084_0014087 Ga0501084_0014087_954_2534 526
151 3300061734 Ga0530510_0001342 Ga0530510_0001342_7117_8697 526

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13193

AMP-binding_C

AMP-binding enzyme C-terminal domain

460

539

0.93

PF00501

AMP-binding

AMP-binding enzyme

49

410

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6h1b-assembly5.cif.gz_E structure of amide bond synthetase mcba k483a mutant from marinactinospora thermotolerans 0.9278 19 517
6sq8-assembly5.cif.gz_E structure of amide bond synthetase mcba from marinactinospora thermotolerans 0.9275 19 517
6m2t-assembly1.cif.gz_A the crystal structure of benzoate coenzyme a ligase double mutant (h333a/i334a) in complex with 2-methyl-thiazole-5 carboxylate-amp 0.9193 11 516
6h1b-assembly5.cif.gz_E structure of amide bond synthetase mcba k483a mutant from marinactinospora thermotolerans 0.9188 19 517
6sq8-assembly5.cif.gz_E structure of amide bond synthetase mcba from marinactinospora thermotolerans 0.9186 19 517
ID Description Score Start End Superfamily
af_O06417_48_454_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.9739 13 416 3.40.50.12780
af_O06417_48_454_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.9645 13 416 3.40.50.12780
af_O06417_456_569_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9574 418 523 3.30.300.30
af_P96843_409_507_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9486 419 516 3.30.300.30
af_P69451_456_557_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9453 419 517 3.30.300.30
ID Description Score Start End GO Terms
AF-X0Y3T5-F1-model_v4 AMP-dependent synthetase/ligase domain-containing protein 0.9463 341 414
AF-A0A2D9F669-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9454 422 520 GO:0006631
GO:0031956
AF-A0A3D5MRC7-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9441 416 521 GO:0016405
AF-A0A2E4XRB8-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9336 420 521 GO:0006631
GO:0031956
AF-A0A838KQ73-F1-model_v4 Long-chain fatty acid--CoA ligase 0.9284 415 521 GO:0016877

Feature Viewer

pLDDT pTM Quality
91 0.87 High
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Predicted Structure (AlphaFold2)

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