F212222

General Info

Members Datasets Scaffolds Average Seq Length
151 127 302 862

Family's Representative Sequence

Representative Sequence 3300039093|Ga0400489_12654|Ga0400489_12654_839_3676
Length 945
Sequence LYGIRSGCGINTFSGEPSKKKDVVMAEINRTALFGKLNSLAYKSVESATVLCKMRGNPYVELTHWLHMVLQLQDSDLHHIVRHYHLNPSRLAADMTSSLDSLPRGATSISDFSPHLEEAVERAWVYSTLLFGDFQVRTGHMVIALLKAAGLKAILPSISSEFTKIKHEDLSDNFADVVGGSPEQGLSAQDGAQVGGAGATGEAGAAVAPAVMGKQEALARFSVDLTETARKGLLDPILGRDDEIRRIVDILMRRRQNNPILTGEAGVGKTAVVEGFAQRIVSGDIPPPLRDVSVRTLDLGLLQAGASMKGEFENRLRHVIEEVQASPQPIILFIDEAHTLIGAGGAAGSGDAANLLKPALARGTLRTVAATTWAEYKKFFEKDAALTRRFQVVKIDEPSEDKAVMMLRGLAGVSEMHHRVQILDQALVAAVQLSHRYIPARQLPDKAVSLLDTACARVAVSLHATPPAVEACRQRIAALETENEILSREEAVGMERRQRRKEINEQLSREVETLSGLEGDWQKEKDLVDKVLELRGKLRAGSGESIDEALAEADLSEQKKLPPQRQAATGPEETAKSPLTEQERESMMAELKRRMAQLTEVQGETPLILPSVDEQAVAAVVADWTGVPVGRMVKNDIETIMRLADILEERVIGQRHALDAIAMRMRTSRAKLENPGRPIGVFMLVGPSGVGKTESALALAEALYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSIVLLDEVEKAHKDVHEIFFQVFDKGRMEDGEGRMIDFKNTIILLTSNVGTDLIMNMCKDPELMPDMAGMAKALRGPLLKTFPPAFLGRLVVVPFYPLGDDVIRKIVHLQLGRIAQRIRENHCIPLTYDDDVVELIISRCTEVDSGARMVDAILSHTLLPQISGEILSRMMEGQALTCIHVKVKGDGFDYGFA

Samples

Sample ID Description Type Environment
1 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
33 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
47 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
48 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
49 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
52 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
53 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
57 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
58 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
59 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
60 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
66 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
67 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
68 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
69 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
72 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
73 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
74 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
75 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
76 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
77 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
78 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
81 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
82 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
83 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
84 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
85 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
88 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
91 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
102 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
108 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
118 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
119 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
120 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
121 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
122 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
123 2643221736 Bosea sp. Root483D1 Isolate Unclassified
124 2841760612 Bosea sp. Tri-49 Isolate Nodule
125 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
126 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
127 2909042592 Labrys sp. LIt4 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.03
Metatranscriptomes 0
Isolates 3.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.31
Nodule 2.65
Rhizoplane 9.93
Rhizosphere 64.24
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400489_12654 3300039093 Bacteria 4999
2 JGI24739J22299_10007924 3300001989 Bacteria 3975
3 JGI24735J21928_10001358 3300002067 Bacteria 8663
4 Ga0070658_10004674 3300005327 Bacteria 11133
5 Ga0070680_100012731 3300005336 Bacteria 6540
6 Ga0068868_100004817 3300005338 Bacteria 9472
7 Ga0070689_100001730 3300005340 Bacteria 13955
8 Ga0070663_100031310 3300005455 Bacteria 3655
9 Ga0070681_10000307 3300005458 Bacteria 39606
10 Ga0070706_100001075 3300005467 Bacteria 29541
11 Ga0068855_100002070 3300005563 Bacteria 24846
12 Ga0068855_100078168 3300005563 Bacteria 3839
13 Ga0070664_100023684 3300005564 Bacteria 5072
14 Ga0068856_100000564 3300005614 Bacteria 40613
15 Ga0068859_100035955 3300005617 Bacteria 4970
16 Ga0068858_100003978 3300005842 Bacteria 14588
17 Ga0081539_10017887 3300005985 Bacteria 4947
18 Ga0075370_10001669 3300006353 Bacteria 9824
19 Ga0075429_100028406 3300006880 Bacteria 4857
20 Ga0075429_100037911 3300006880 Bacteria 4196
21 Ga0075436_100000215 3300006914 Bacteria 35586
22 Ga0097620_100035954 3300006931 Bacteria 4970
23 Ga0105251_10000807 3300009011 Bacteria 28358
24 Ga0111539_10001923 3300009094 Bacteria 27674
25 Ga0111539_10013076 3300009094 Bacteria 10383
26 Ga0114129_10001018 3300009147 Bacteria 36582
27 Ga0105243_10015588 3300009148 Bacteria 5746
28 Ga0105237_10002816 3300009545 Bacteria 21136
29 Ga0105237_10040064 3300009545 Bacteria 4726
30 Ga0105239_10010770 3300010375 Bacteria 10216
31 Ga0105246_10002862 3300011119 Bacteria 10441
32 Ga0157369_10060680 3300013105 Bacteria 4078
33 Ga0157375_10003961 3300013308 Bacteria 12843
34 Ga0163163_10001961 3300014325 Bacteria 17388
35 Ga0157376_10009413 3300014969 Bacteria 7094
36 Ga0209025_1002055 3300025294 Bacteria 22908
37 Ga0207426_1002329 3300025302 Bacteria 12416
38 Ga0207705_10010153 3300025909 Bacteria 6852
39 Ga0207707_10020595 3300025912 Bacteria 5761
40 Ga0207695_10000367 3300025913 Bacteria 103313
41 Ga0207660_10007256 3300025917 Bacteria 7173
42 Ga0207646_10084727 3300025922 Bacteria 2836
43 Ga0207686_10021374 3300025934 Bacteria 3713
44 Ga0207709_10009259 3300025935 Bacteria 5424
45 Ga0207670_10001268 3300025936 Bacteria 13343
46 Ga0207704_10007215 3300025938 Bacteria 5234
47 Ga0207703_10008006 3300026035 Bacteria 8352
48 Ga0207676_10038477 3300026095 Bacteria 3651
49 Ga0207683_10012359 3300026121 Bacteria 7285
50 Ga0265326_10001560 3300028558 Bacteria 7997
51 Ga0265319_1007439 3300028563 Bacteria 4927
52 Ga0265334_10000150 3300028573 Bacteria 43234
53 Ga0265318_10001377 3300028577 Bacteria 14426
54 Ga0265318_10001438 3300028577 Bacteria 14020
55 Ga0265338_10009863 3300028800 Bacteria 11309
56 Ga0265338_10015810 3300028800 Bacteria 8263
57 Ga0265332_10000435 3300031238 Bacteria 29466
58 Ga0265320_10005701 3300031240 Bacteria 7945
59 Ga0265329_10010339 3300031242 Bacteria 3431
60 Ga0265331_10002802 3300031250 Bacteria 11558
61 Ga0265327_10000866 3300031251 Bacteria 44980
62 Ga0265313_10004695 3300031595 Bacteria 10316
63 Ga0265314_10024956 3300031711 Bacteria 4518
64 Ga0265342_10005918 3300031712 Bacteria 9214
65 Ga0307510_10020271 3300033180 Bacteria 7776
66 Ga0373931_0004855 3300035691 Bacteria 6177
67 Ga0395900_0021458 3300037418 Bacteria 6602
68 Ga0395898_0020354 3300037466 Bacteria 6737
69 Ga0436364_0245816 3300037853 Bacteria 19569
70 Ga0395901_0001785 3300038443 Bacteria 22188
71 Ga0400490_09006 3300038726 Bacteria 131367
72 Ga0400490_34469 3300038726 Bacteria 3764
73 Ga0400485_09947 3300038735 Bacteria 8848
74 Ga0400488_61965 3300038741 Bacteria 16760
75 Ga0400486_02827 3300038742 Bacteria 5177
76 Ga0400486_25002 3300038742 Bacteria 8356
77 Ga0400489_29203 3300039093 Bacteria 32741
78 Ga0400489_69536 3300039093 Bacteria 13061
79 Ga0400487_18092 3300039110 Bacteria 12722
80 Ga0436365_0208787 3300039437 Bacteria 18775
81 Ga0436365_0736637 3300039437 Bacteria 3340
82 Ga0436360_1072889 3300039438 Bacteria 5785
83 Ga0436361_0245595 3300039447 Bacteria 8681
84 Ga0436361_0356870 3300039447 Bacteria 4267
85 Ga0436361_0527713 3300039447 Bacteria 3698
86 Ga0436361_0611295 3300039447 Bacteria 20926
87 Ga0436361_0857519 3300039447 Bacteria 3532
88 Ga0436363_1055555 3300039450 Bacteria 6753
89 Ga0436363_1359495 3300039450 Bacteria 7598
90 Ga0439438_001082 3300041405 Bacteria 12178
91 Ga0439452_000011 3300042010 Bacteria 428451
92 Ga0450908_000202 3300042184 Bacteria 12043
93 Ga0451577_0000645 3300042876 Bacteria 55477
94 Ga0453683_0010765 3300044673 Bacteria 6055
95 Ga0453684_0004759 3300044712 Bacteria 28018
96 Ga0466958_0042803 3300045836 Bacteria 2727
97 Ga0495603_0000453 3300046455 Bacteria 22562
98 Ga0495590_0000746 3300046457 Bacteria 14770
99 Ga0495629_0000158 3300046459 Bacteria 59643
100 Ga0495629_0018234 3300046459 Bacteria 5027
101 Ga0495650_0000655 3300046471 Bacteria 45487
102 Ga0495580_0005363 3300046472 Bacteria 10617
103 Ga0495664_0010898 3300046477 Bacteria 5112
104 Ga0495645_0000335 3300046543 Bacteria 33495
105 Ga0495604_0009042 3300047317 Bacteria 7882
106 Ga0495687_000258 3300047443 Bacteria 71365
107 Ga0495593_0006803 3300047673 Bacteria 6692
108 Ga0496100_0005514 3300048903 Bacteria 6827
109 Ga0496101_0015009 3300048904 Bacteria 5212
110 Ga0496102_0002038 3300048905 Bacteria 17450
111 Ga0496102_0004937 3300048905 Bacteria 11297
112 Ga0496102_0036467 3300048905 Bacteria 4430
113 Ga0496103_0000895 3300048906 Bacteria 21521
114 Ga0496104_0092830 3300048907 Bacteria 2886
115 Ga0496106_0001629 3300048909 Bacteria 16874
116 Ga0496107_0001896 3300048910 Bacteria 13252
117 Ga0496107_0025108 3300048910 Bacteria 4217
118 Ga0496110_0000760 3300048913 Bacteria 22314
119 Ga0496110_0005882 3300048913 Bacteria 9653
120 Ga0496112_0003655 3300048915 Bacteria 12816
121 Ga0496114_0001326 3300048917 Bacteria 18760
122 Ga0496115_0002180 3300048918 Bacteria 14015
123 Ga0496116_0001729 3300048919 Bacteria 23851
124 Ga0496117_0014452 3300048920 Bacteria 6800
125 Ga0496118_0008040 3300048921 Bacteria 11015
126 Ga0496119_0006428 3300048922 Bacteria 10895
127 Ga0496121_0016097 3300048924 Bacteria 7749
128 Ga0496122_0004434 3300048925 Bacteria 17420
129 Ga0496123_0005256 3300048926 Bacteria 13141
130 Ga0496124_0018807 3300048927 Bacteria 6454
131 Ga0496125_0000060 3300048928 Bacteria 264143
132 Ga0496125_0000583 3300048928 Bacteria 62446
133 Ga0496125_0004113 3300048928 Bacteria 16994
134 Ga0496125_0019006 3300048928 Bacteria 6502
135 Ga0501033_0002757 3300049570 Bacteria 14721
136 Ga0501036_0000759 3300049572 Bacteria 23917
137 Ga0501037_0000382 3300049573 Bacteria 36888
138 Ga0501038_0000641 3300049574 Bacteria 31082
139 Ga0501039_0051188 3300049575 Bacteria 3196
140 Ga0501045_0048265 3300049824 Bacteria 3104
141 nmdc:mga07m45_423_c1 3300050496 Bacteria 17452
142 nmdc:mga05p37_983_c1 3300050507 Bacteria 32426
143 nmdc:mga06r32_490_c1 3300050510 Bacteria 34098
144 nmdc:mga0a205_25062_c1 3300050515 Bacteria 5679
145 Ga0500622_0016217 3300053156 Bacteria 3982
146 2574431310 2574179768 Bacteria 4907129
147 2644747236 2643221736 Bacteria 6608466
148 2841762025 2841760612 Bacteria 6454112
149 2841915461 2841911363 Bacteria 6173697
150 2841920663 2841917233 Bacteria 6173500
151 2909045447 2909042592 Bacteria 6499737
152 Ga0400489_12654
153 JGI24739J22299_10007924
154 JGI24735J21928_10001358
155 Ga0070658_10004674
156 Ga0070680_100012731
157 Ga0068868_100004817
158 Ga0070689_100001730
159 Ga0070663_100031310
160 Ga0070681_10000307
161 Ga0070706_100001075
162 Ga0068855_100002070
163 Ga0068855_100078168
164 Ga0070664_100023684
165 Ga0068856_100000564
166 Ga0068859_100035955
167 Ga0068858_100003978
168 Ga0081539_10017887
169 Ga0075370_10001669
170 Ga0075429_100028406
171 Ga0075429_100037911
172 Ga0075436_100000215
173 Ga0097620_100035954
174 Ga0105251_10000807
175 Ga0111539_10001923
176 Ga0111539_10013076
177 Ga0114129_10001018
178 Ga0105243_10015588
179 Ga0105237_10002816
180 Ga0105237_10040064
181 Ga0105239_10010770
182 Ga0105246_10002862
183 Ga0157369_10060680
184 Ga0157375_10003961
185 Ga0163163_10001961
186 Ga0157376_10009413
187 Ga0209025_1002055
188 Ga0207426_1002329
189 Ga0207705_10010153
190 Ga0207707_10020595
191 Ga0207695_10000367
192 Ga0207660_10007256
193 Ga0207646_10084727
194 Ga0207686_10021374
195 Ga0207709_10009259
196 Ga0207670_10001268
197 Ga0207704_10007215
198 Ga0207703_10008006
199 Ga0207676_10038477
200 Ga0207683_10012359
201 Ga0265326_10001560
202 Ga0265319_1007439
203 Ga0265334_10000150
204 Ga0265318_10001377
205 Ga0265318_10001438
206 Ga0265338_10009863
207 Ga0265338_10015810
208 Ga0265332_10000435
209 Ga0265320_10005701
210 Ga0265329_10010339
211 Ga0265331_10002802
212 Ga0265327_10000866
213 Ga0265313_10004695
214 Ga0265314_10024956
215 Ga0265342_10005918
216 Ga0307510_10020271
217 Ga0373931_0004855
218 Ga0395900_0021458
219 Ga0395898_0020354
220 Ga0436364_0245816
221 Ga0395901_0001785
222 Ga0400490_09006
223 Ga0400490_34469
224 Ga0400485_09947
225 Ga0400488_61965
226 Ga0400486_02827
227 Ga0400486_25002
228 Ga0400489_29203
229 Ga0400489_69536
230 Ga0400487_18092
231 Ga0436365_0208787
232 Ga0436365_0736637
233 Ga0436360_1072889
234 Ga0436361_0245595
235 Ga0436361_0356870
236 Ga0436361_0527713
237 Ga0436361_0611295
238 Ga0436361_0857519
239 Ga0436363_1055555
240 Ga0436363_1359495
241 Ga0439438_001082
242 Ga0439452_000011
243 Ga0450908_000202
244 Ga0451577_0000645
245 Ga0453683_0010765
246 Ga0453684_0004759
247 Ga0466958_0042803
248 Ga0495603_0000453
249 Ga0495590_0000746
250 Ga0495629_0000158
251 Ga0495629_0018234
252 Ga0495650_0000655
253 Ga0495580_0005363
254 Ga0495664_0010898
255 Ga0495645_0000335
256 Ga0495604_0009042
257 Ga0495687_000258
258 Ga0495593_0006803
259 Ga0496100_0005514
260 Ga0496101_0015009
261 Ga0496102_0002038
262 Ga0496102_0004937
263 Ga0496102_0036467
264 Ga0496103_0000895
265 Ga0496104_0092830
266 Ga0496106_0001629
267 Ga0496107_0001896
268 Ga0496107_0025108
269 Ga0496110_0000760
270 Ga0496110_0005882
271 Ga0496112_0003655
272 Ga0496114_0001326
273 Ga0496115_0002180
274 Ga0496116_0001729
275 Ga0496117_0014452
276 Ga0496118_0008040
277 Ga0496119_0006428
278 Ga0496121_0016097
279 Ga0496122_0004434
280 Ga0496123_0005256
281 Ga0496124_0018807
282 Ga0496125_0000060
283 Ga0496125_0000583
284 Ga0496125_0004113
285 Ga0496125_0019006
286 Ga0501033_0002757
287 Ga0501036_0000759
288 Ga0501037_0000382
289 Ga0501038_0000641
290 Ga0501039_0051188
291 Ga0501045_0048265
292 nmdc:mga07m45_423_c1
293 nmdc:mga05p37_983_c1
294 nmdc:mga06r32_490_c1
295 nmdc:mga0a205_25062_c1
296 Ga0500622_0016217
297 2574431310
298 2644747236
299 2841762025
300 2841915461
301 2841920663
302 2909045447

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07724

AAA_2

AAA domain (Cdc48 subfamily)

677

845

0.98

PF10431

ClpB_D2-small

C-terminal, D2-small domain, of ClpB protein

850

930

0.93

PF17871

AAA_lid_9

AAA lid domain

399

506

0.92

PF07728

AAA_5

AAA domain (dynein-related subfamily)

681

816

0.8

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

682

809

0.79

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

259

395

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
4uqw-assembly1.cif.gz_A coevolution of the atpase clpv, the tssb-tssc sheath and the accessory hsie protein distinguishes two type vi secretion classes 0.9655 1 159
4uqw-assembly2.cif.gz_B coevolution of the atpase clpv, the tssb-tssc sheath and the accessory hsie protein distinguishes two type vi secretion classes 0.9634 1 159
4uqw-assembly2.cif.gz_B coevolution of the atpase clpv, the tssb-tssc sheath and the accessory hsie protein distinguishes two type vi secretion classes 0.9515 1 159
1jbk-assembly1.cif.gz_A crystal structure of the first nucelotide binding domain of clpb 0.9429 177 368
4uqw-assembly1.cif.gz_A coevolution of the atpase clpv, the tssb-tssc sheath and the accessory hsie protein distinguishes two type vi secretion classes 0.9425 1 159
ID Description Score Start End Superfamily
af_A0A1D6K706_96_155_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9953 367 424 1.10.8.60
1r6bX03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9691 361 420 1.10.8.60
4hseA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9651 177 359 3.40.50.300
4uqwB00 Mainly Alpha;Orthogonal Bundle;Double Clp-N motif;Clp, N-terminal domain 0.9631 1 158 1.10.1780.10
1ksfX03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9588 361 422 1.10.8.60
ID Description Score Start End GO Terms
AF-H3G6H2-F1-model_v4 ATPase AAA-type core domain-containing protein 0.9951 177 283 GO:0005524
GO:0016887
AF-A0A1X7MKJ3-F1-model_v4 deleted 0.9865 1 131
AF-A0A380B9P7-F1-model_v4 ATP-dependent Clp proteinase ATP-binding chain 0.9831 186 301 GO:0005524
GO:0005737
GO:0016887
GO:0034605
AF-H3G6H2-F1-model_v4 ATPase AAA-type core domain-containing protein 0.9769 177 283 GO:0005524
GO:0016887
AF-A0A435GN22-F1-model_v4 AAA family ATPase 0.9714 209 389 GO:0005524
GO:0005737
GO:0016887
GO:0034605

Map