F198352

General Info

Members Datasets Scaffolds Average Seq Length
146 68 146 262

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0607012|Ga0453684_0607012_310_1149
Length 279
Sequence LTVRLSLTVPKYLNIAMHFDAFDRYHEKESFLHRLDPRVKAVTTILFIVSNALLPDGVWLAFIFSWIFLLAANLLSKLGILYTLKRSLIALPFALIAVTVLFSTPGKPLASFIFLSLDFIITDAGVLRFVSILIRSWLSVQMAILLVSVTRFPDLIHALEHLRVPVILTTIIAFLYRYLFVLVDEVYRLLRAREARSASVHGHKSGGSLLWRARIAGNMTGQLFLRSYERSDRIYNAMISRGYAGHLYTLNPHEMKPNDYFALACSLAVIFILQVIGRL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
11 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
12 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
13 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
19 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
28 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
29 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
30 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
31 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
32 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
33 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
34 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
35 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
36 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
38 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
39 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
40 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
41 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
42 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
43 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
44 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
45 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
46 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
47 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
48 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
49 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
50 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
52 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
53 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
54 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
55 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
56 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
57 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
58 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
59 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
60 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
61 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
62 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
63 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
64 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
65 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
66 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
67 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
68 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.32
Metatranscriptomes 0.68
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 97.26
Stem 0
Stem Tuber 0
Unclassified 2.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2912103 2162886007 Bacteria 6091
2 Ga0065704_10000924 3300005289 Bacteria 24602
3 Ga0065704_10120199 3300005289 Bacteria 1787
4 Ga0065707_10000714 3300005295 Bacteria 22104
5 Ga0065707_10005939 3300005295 Bacteria 2940
6 Ga0065707_10023127 3300005295 Unclassified 1383
7 Ga0065707_10086465 3300005295 Bacteria 5427
8 Ga0070680_100200083 3300005336 Unclassified 1684
9 Ga0070700_100293279 3300005441 Bacteria 1184
10 Ga0070706_100290160 3300005467 Bacteria 1527
11 Ga0070698_100296297 3300005471 Bacteria 1548
12 Ga0070699_100009165 3300005518 Bacteria 8579
13 Ga0070699_100034342 3300005518 Bacteria 4383
14 Ga0070699_100213427 3300005518 Bacteria 1719
15 Ga0068857_100134046 3300005577 Bacteria 2236
16 Ga0068861_100582765 3300005719 Bacteria 1024
17 Ga0068862_100124107 3300005844 Bacteria 2279
18 Ga0075428_100011637 3300006844 Bacteria 9789
19 Ga0075430_100453163 3300006846 Bacteria 1059
20 Ga0075431_100020281 3300006847 Bacteria 6788
21 Ga0075431_100205433 3300006847 Bacteria 2014
22 Ga0075431_100398835 3300006847 Bacteria 1377
23 Ga0075429_100001805 3300006880 Bacteria 17727
24 Ga0075429_100042134 3300006880 Bacteria 3974
25 Ga0075429_100105149 3300006880 Bacteria 2466
26 Ga0075429_100119277 3300006880 Bacteria 2305
27 Ga0075429_100146810 3300006880 Unclassified 2064
28 Ga0075429_100165122 3300006880 Bacteria 1939
29 Ga0075429_100604497 3300006880 Unclassified 961
30 Ga0111539_10050297 3300009094 Bacteria 4964
31 Ga0114129_10002324 3300009147 Bacteria 26403
32 Ga0114129_10011768 3300009147 Bacteria 12447
33 Ga0114129_10045493 3300009147 Bacteria 6171
34 Ga0105249_10048285 3300009553 Bacteria 3881
35 Ga0105249_10125638 3300009553 Unclassified 2442
36 Ga0207643_10179140 3300025908 Bacteria 1282
37 Ga0207684_10269439 3300025910 Bacteria 1469
38 Ga0207646_10094910 3300025922 Bacteria 2671
39 Ga0207670_10153717 3300025936 Bacteria 1710
40 Ga0207712_10249391 3300025961 Unclassified 1434
41 Ga0207674_10347461 3300026116 Bacteria 1434
42 Ga0207675_100926646 3300026118 Unclassified 888
43 Ga0268265_10344304 3300028380 Bacteria 1359
44 Ga0316575_10021531 3300031665 Bacteria 2483
45 Ga0316575_10034433 3300031665 Bacteria 1990
46 Ga0316579_10009575 3300031691 Bacteria 4078
47 Ga0316579_10076784 3300031691 Unclassified 1588
48 Ga0316579_10086254 3300031691 Bacteria 1498
49 Ga0316576_10008224 3300031727 Bacteria 6633
50 Ga0316576_10158385 3300031727 Bacteria 1707
51 Ga0316576_10321272 3300031727 Unclassified 1155
52 Ga0316576_10409254 3300031727 Unclassified 1005
53 Ga0316578_10112750 3300031728 Bacteria 1634
54 Ga0307405_10115477 3300031731 Bacteria 1827
55 Ga0316577_10001730 3300031733 Bacteria 10484
56 Ga0316577_10018638 3300031733 Unclassified 3840
57 Ga0316577_10033286 3300031733 Bacteria 2879
58 Ga0316577_10129678 3300031733 Bacteria 1419
59 Ga0316577_10186975 3300031733 Bacteria 1170
60 Ga0307416_100082075 3300032002 Bacteria 2729
61 Ga0307415_100144112 3300032126 Bacteria 1824
62 Ga0316585_10051175 3300032137 Bacteria 1327
63 Ga0316593_10013302 3300032168 Bacteria 2434
64 Ga0316574_0004824 3300035398 Bacteria 7137
65 Ga0316582_0047831 3300036647 Bacteria 2702
66 Ga0316582_0110306 3300036647 Unclassified 1831
67 Ga0316582_0200509 3300036647 Bacteria 1361
68 Ga0316582_0279751 3300036647 Unclassified 1145
69 Ga0316584_0023901 3300036712 Unclassified 4467
70 Ga0316584_0046893 3300036712 Bacteria 3227
71 Ga0316584_0074194 3300036712 Bacteria 2551
72 Ga0316584_0097485 3300036712 Unclassified 2201
73 Ga0316584_0177341 3300036712 Bacteria 1578
74 Ga0316581_0007308 3300037588 Bacteria 2958
75 Ga0316581_0021505 3300037588 Unclassified 1896
76 Ga0400484_44653 3300038725 Bacteria 10080
77 Ga0400490_42193 3300038726 Bacteria 5123
78 Ga0400488_25622 3300038741 Unclassified 2250
79 Ga0400489_53782 3300039093 Bacteria 5075
80 Ga0451577_0022251 3300042876 Bacteria 5788
81 Ga0451577_0072594 3300042876 Bacteria 3071
82 Ga0451577_0103918 3300042876 Bacteria 2539
83 Ga0451577_0134888 3300042876 Bacteria 2216
84 Ga0453683_0016722 3300044673 Unclassified 4728
85 Ga0453683_0036569 3300044673 Bacteria 3090
86 Ga0453683_0053564 3300044673 Bacteria 2525
87 Ga0453683_0118803 3300044673 Bacteria 1664
88 Ga0453684_0000128 3300044712 Bacteria 335864
89 Ga0453684_0006006 3300044712 Bacteria 23513
90 Ga0453684_0006959 3300044712 Bacteria 21165
91 Ga0453684_0017406 3300044712 Bacteria 11135
92 Ga0453684_0027680 3300044712 Bacteria 8116
93 Ga0453684_0033628 3300044712 Bacteria 7143
94 Ga0453684_0050600 3300044712 Bacteria 5462
95 Ga0453684_0069883 3300044712 Unclassified 4451
96 Ga0453684_0077441 3300044712 Bacteria 4167
97 Ga0453684_0083697 3300044712 Bacteria 3970
98 Ga0453684_0086456 3300044712 Bacteria 3891
99 Ga0453684_0103726 3300044712 Bacteria 3474
100 Ga0453684_0189546 3300044712 Bacteria 2407
101 Ga0453684_0215010 3300044712 Bacteria 2231
102 Ga0453684_0223336 3300044712 Bacteria 2180
103 Ga0453684_0536830 3300044712 Bacteria 1290
104 Ga0453684_0607012 3300044712 Bacteria 1198
105 Ga0451576_0000192 3300045051 Bacteria 154140
106 Ga0451576_0004686 3300045051 Bacteria 17600
107 Ga0451576_0032495 3300045051 Bacteria 5555
108 Ga0451576_0036708 3300045051 Bacteria 5193
109 Ga0451576_0046697 3300045051 Bacteria 4559
110 Ga0451576_0336249 3300045051 Bacteria 1581
111 Ga0451576_0367953 3300045051 Unclassified 1506
112 Ga0451576_0640480 3300045051 Unclassified 1117
113 Ga0501036_0365224 3300049572 Bacteria 1205
114 Ga0501040_0101042 3300049576 Bacteria 2012
115 Ga0501048_0222505 3300049582 Archaea 1339
116 Ga0501071_0112736 3300049587 Bacteria 2011
117 Ga0501074_0359906 3300049590 Unclassified 1032
118 Ga0501075_0002609 3300049591 Bacteria 12041
119 Ga0501076_0039639 3300049592 Bacteria 3699
120 Ga0501076_0076097 3300049592 Bacteria 2691
121 Ga0501076_0090463 3300049592 Bacteria 2462
122 Ga0501076_0116359 3300049592 Bacteria 2164
123 Ga0501077_0261091 3300049593 Unclassified 1102
124 Ga0501079_0019393 3300049741 Bacteria 5194
125 Ga0501079_0059398 3300049741 Bacteria 2950
126 Ga0501080_0119165 3300049742 Bacteria 2447
127 Ga0501080_0378033 3300049742 Archaea 1277
128 Ga0501081_0216564 3300049743 Bacteria 1392
129 Ga0501045_0215238 3300049824 Unclassified 1431
130 nmdc:mga05p37_18487_c1 3300050507 Bacteria 8420
131 nmdc:mga05p37_62517_c1 3300050507 Bacteria 4582
132 nmdc:mga05p37_93_c1 3300050507 Bacteria 41540
133 nmdc:mga09592_1509_c1 3300050508 Bacteria 18741
134 nmdc:mga09592_260807_c1 3300050508 Bacteria 1503
135 nmdc:mga09592_291736_c1 3300050508 Bacteria 1414
136 nmdc:mga09592_51788_c1 3300050508 Bacteria 3464
137 nmdc:mga06r32_207942_c1 3300050510 Bacteria 1945
138 nmdc:mga06r32_325411_c1 3300050510 Bacteria 1522
139 nmdc:mga06r32_863297_c1 3300050510 Unclassified 863
140 nmdc:mga08y16_84458_c1 3300050511 Bacteria 3309
141 nmdc:mga0a205_515354_c1 3300050515 Unclassified 1052
142 Ga0501084_0024118 3300054114 Bacteria 5074
143 Ga0501084_0103136 3300054114 Bacteria 2396
144 Ga0501082_0155581 3300060353 Bacteria 1986
145 Ga0501082_0543802 3300060353 Bacteria 1016
146 Ga0530510_0058028 3300061734 Bacteria 2798

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031691 Ga0316579_10076784 Ga0316579_100767843 226
2 3300031733 Ga0316577_10018638 Ga0316577_100186384 226
3 3300036712 Ga0316584_0023901 Ga0316584_0023901_1605_2411 226
4 3300037588 Ga0316581_0021505 Ga0316581_0021505_946_1752 227
5 3300006847 Ga0075431_100205433 Ga0075431_1002054332 237
6 3300050510 nmdc:mga06r32_207942_c1 nmdc:mga06r32_207942_c1_726_1517 237
7 3300045051 Ga0451576_0336249 Ga0451576_0336249_518_1309 241
8 3300039093 Ga0400489_53782 Ga0400489_53782_2624_3427 248
9 3300042876 Ga0451577_0134888 Ga0451577_0134888_1146_1937 254
10 3300006844 Ga0075428_100011637 Ga0075428_1000116376 255
11 3300006847 Ga0075431_100398835 Ga0075431_1003988352 255
12 3300006880 Ga0075429_100042134 Ga0075429_1000421342 255
13 3300009147 Ga0114129_10045493 Ga0114129_100454934 255
14 3300050507 nmdc:mga05p37_62517_c1 nmdc:mga05p37_62517_c1_3073_3876 255
15 3300050508 nmdc:mga09592_51788_c1 nmdc:mga09592_51788_c1_908_1711 255
16 3300050510 nmdc:mga06r32_325411_c1 nmdc:mga06r32_325411_c1_340_1143 255
17 3300032126 Ga0307415_100144112 Ga0307415_1001441122 257
18 3300031733 Ga0316577_10001730 Ga0316577_100017308 258
19 3300036647 Ga0316582_0110306 Ga0316582_0110306_31_858 258
20 3300036647 Ga0316582_0279751 Ga0316582_0279751_321_1127 258
21 3300036712 Ga0316584_0046893 Ga0316584_0046893_1820_2674 258
22 3300036712 Ga0316584_0177341 Ga0316584_0177341_499_1326 258
23 3300037588 Ga0316581_0007308 Ga0316581_0007308_1798_2652 258
24 3300031665 Ga0316575_10021531 Ga0316575_100215312 262
25 3300036712 Ga0316584_0074194 Ga0316584_0074194_1250_2047 262
26 2162886007 SwRhRL2b_contig_2912103 SwRhRL2b_0339.00007790 263
27 3300005289 Ga0065704_10000924 Ga0065704_100009249 263
28 3300005289 Ga0065704_10120199 Ga0065704_101201992 263
29 3300005295 Ga0065707_10000714 Ga0065707_100007142 263
30 3300005295 Ga0065707_10005939 Ga0065707_100059393 263
31 3300005295 Ga0065707_10023127 Ga0065707_100231272 263
32 3300005295 Ga0065707_10086465 Ga0065707_100864652 263
33 3300005336 Ga0070680_100200083 Ga0070680_1002000831 263
34 3300005441 Ga0070700_100293279 Ga0070700_1002932792 263
35 3300005467 Ga0070706_100290160 Ga0070706_1002901602 263
36 3300005471 Ga0070698_100296297 Ga0070698_1002962972 263
37 3300005518 Ga0070699_100009165 Ga0070699_1000091653 263
38 3300005518 Ga0070699_100034342 Ga0070699_1000343422 263
39 3300005518 Ga0070699_100213427 Ga0070699_1002134272 263
40 3300005577 Ga0068857_100134046 Ga0068857_1001340462 263
41 3300005719 Ga0068861_100582765 Ga0068861_1005827651 263
42 3300005844 Ga0068862_100124107 Ga0068862_1001241072 263
43 3300006846 Ga0075430_100453163 Ga0075430_1004531632 263
44 3300006847 Ga0075431_100020281 Ga0075431_1000202814 263
45 3300006880 Ga0075429_100001805 Ga0075429_1000018057 263
46 3300006880 Ga0075429_100105149 Ga0075429_1001051492 263
47 3300006880 Ga0075429_100119277 Ga0075429_1001192772 263
48 3300006880 Ga0075429_100146810 Ga0075429_1001468103 263
49 3300006880 Ga0075429_100165122 Ga0075429_1001651222 263
50 3300006880 Ga0075429_100604497 Ga0075429_1006044971 263
51 3300009094 Ga0111539_10050297 Ga0111539_100502973 263
52 3300009147 Ga0114129_10002324 Ga0114129_100023244 263
53 3300009147 Ga0114129_10011768 Ga0114129_100117683 263
54 3300009553 Ga0105249_10048285 Ga0105249_100482852 263
55 3300009553 Ga0105249_10125638 Ga0105249_101256382 263
56 3300025908 Ga0207643_10179140 Ga0207643_101791402 263
57 3300025910 Ga0207684_10269439 Ga0207684_102694392 263
58 3300025922 Ga0207646_10094910 Ga0207646_100949102 263
59 3300025936 Ga0207670_10153717 Ga0207670_101537172 263
60 3300025961 Ga0207712_10249391 Ga0207712_102493912 263
61 3300026116 Ga0207674_10347461 Ga0207674_103474612 263
62 3300026118 Ga0207675_100926646 Ga0207675_1009266461 263
63 3300028380 Ga0268265_10344304 Ga0268265_103443042 263
64 3300031665 Ga0316575_10034433 Ga0316575_100344332 263
65 3300031691 Ga0316579_10009575 Ga0316579_100095755 263
66 3300031691 Ga0316579_10086254 Ga0316579_100862542 263
67 3300031727 Ga0316576_10008224 Ga0316576_100082247 263
68 3300031727 Ga0316576_10158385 Ga0316576_101583852 263
69 3300031727 Ga0316576_10321272 Ga0316576_103212722 263
70 3300031727 Ga0316576_10409254 Ga0316576_104092542 263
71 3300031728 Ga0316578_10112750 Ga0316578_101127502 263
72 3300031731 Ga0307405_10115477 Ga0307405_101154772 263
73 3300031733 Ga0316577_10033286 Ga0316577_100332862 263
74 3300031733 Ga0316577_10129678 Ga0316577_101296781 263
75 3300031733 Ga0316577_10186975 Ga0316577_101869752 263
76 3300032002 Ga0307416_100082075 Ga0307416_1000820753 263
77 3300032137 Ga0316585_10051175 Ga0316585_100511751 263
78 3300032168 Ga0316593_10013302 Ga0316593_100133021 263
79 3300035398 Ga0316574_0004824 Ga0316574_0004824_4025_4828 263
80 3300036647 Ga0316582_0047831 Ga0316582_0047831_371_1162 263
81 3300036647 Ga0316582_0200509 Ga0316582_0200509_459_1253 263
82 3300036712 Ga0316584_0097485 Ga0316584_0097485_1030_1824 263
83 3300038725 Ga0400484_44653 Ga0400484_44653_8023_8817 263
84 3300038726 Ga0400490_42193 Ga0400490_42193_535_1329 263
85 3300038741 Ga0400488_25622 Ga0400488_25622_1338_2132 263
86 3300042876 Ga0451577_0022251 Ga0451577_0022251_907_1698 263
87 3300042876 Ga0451577_0072594 Ga0451577_0072594_2162_2953 263
88 3300042876 Ga0451577_0103918 Ga0451577_0103918_1042_1833 263
89 3300044673 Ga0453683_0016722 Ga0453683_0016722_752_1543 263
90 3300044673 Ga0453683_0036569 Ga0453683_0036569_412_1203 263
91 3300044673 Ga0453683_0053564 Ga0453683_0053564_788_1582 263
92 3300044673 Ga0453683_0118803 Ga0453683_0118803_303_1097 263
93 3300044712 Ga0453684_0000128 Ga0453684_0000128_278323_279117 263
94 3300044712 Ga0453684_0006006 Ga0453684_0006006_8239_9030 263
95 3300044712 Ga0453684_0006959 Ga0453684_0006959_15321_16112 263
96 3300044712 Ga0453684_0017406 Ga0453684_0017406_5107_5898 263
97 3300044712 Ga0453684_0027680 Ga0453684_0027680_3214_4005 263
98 3300044712 Ga0453684_0033628 Ga0453684_0033628_3392_4183 263
99 3300044712 Ga0453684_0050600 Ga0453684_0050600_247_1038 263
100 3300044712 Ga0453684_0069883 Ga0453684_0069883_1146_1937 263
101 3300044712 Ga0453684_0077441 Ga0453684_0077441_1928_2719 263
102 3300044712 Ga0453684_0083697 Ga0453684_0083697_404_1195 263
103 3300044712 Ga0453684_0086456 Ga0453684_0086456_2252_3043 263
104 3300044712 Ga0453684_0103726 Ga0453684_0103726_1355_2146 263
105 3300044712 Ga0453684_0189546 Ga0453684_0189546_1203_1994 263
106 3300044712 Ga0453684_0215010 Ga0453684_0215010_192_983 263
107 3300044712 Ga0453684_0223336 Ga0453684_0223336_908_1699 263
108 3300044712 Ga0453684_0536830 Ga0453684_0536830_479_1270 263
109 3300044712 Ga0453684_0607012 Ga0453684_0607012_310_1149 263
110 3300045051 Ga0451576_0000192 Ga0451576_0000192_58340_59134 263
111 3300045051 Ga0451576_0004686 Ga0451576_0004686_14839_15633 263
112 3300045051 Ga0451576_0032495 Ga0451576_0032495_3176_3967 263
113 3300045051 Ga0451576_0036708 Ga0451576_0036708_2355_3146 263
114 3300045051 Ga0451576_0046697 Ga0451576_0046697_352_1143 263
115 3300045051 Ga0451576_0367953 Ga0451576_0367953_261_1052 263
116 3300045051 Ga0451576_0640480 Ga0451576_0640480_19_810 263
117 3300049572 Ga0501036_0365224 Ga0501036_0365224_118_909 263
118 3300049576 Ga0501040_0101042 Ga0501040_0101042_200_991 263
119 3300049582 Ga0501048_0222505 Ga0501048_0222505_509_1300 263
120 3300049587 Ga0501071_0112736 Ga0501071_0112736_1070_1861 263
121 3300049590 Ga0501074_0359906 Ga0501074_0359906_130_921 263
122 3300049591 Ga0501075_0002609 Ga0501075_0002609_7521_8312 263
123 3300049592 Ga0501076_0039639 Ga0501076_0039639_2204_2995 263
124 3300049592 Ga0501076_0076097 Ga0501076_0076097_866_1657 263
125 3300049592 Ga0501076_0090463 Ga0501076_0090463_1523_2314 263
126 3300049592 Ga0501076_0116359 Ga0501076_0116359_1101_1892 263
127 3300049593 Ga0501077_0261091 Ga0501077_0261091_63_854 263
128 3300049741 Ga0501079_0019393 Ga0501079_0019393_3205_3996 263
129 3300049741 Ga0501079_0059398 Ga0501079_0059398_468_1259 263
130 3300049742 Ga0501080_0119165 Ga0501080_0119165_1067_1858 263
131 3300049742 Ga0501080_0378033 Ga0501080_0378033_321_1112 263
132 3300049743 Ga0501081_0216564 Ga0501081_0216564_207_998 263
133 3300049824 Ga0501045_0215238 Ga0501045_0215238_533_1324 263
134 3300050507 nmdc:mga05p37_18487_c1 nmdc:mga05p37_18487_c1_3090_3893 263
135 3300050507 nmdc:mga05p37_93_c1 nmdc:mga05p37_93_c1_1790_2581 263
136 3300050508 nmdc:mga09592_1509_c1 nmdc:mga09592_1509_c1_8871_9662 263
137 3300050508 nmdc:mga09592_260807_c1 nmdc:mga09592_260807_c1_227_1018 263
138 3300050508 nmdc:mga09592_291736_c1 nmdc:mga09592_291736_c1_499_1290 263
139 3300050510 nmdc:mga06r32_863297_c1 nmdc:mga06r32_863297_c1_51_842 263
140 3300050511 nmdc:mga08y16_84458_c1 nmdc:mga08y16_84458_c1_1437_2228 263
141 3300050515 nmdc:mga0a205_515354_c1 nmdc:mga0a205_515354_c1_11_802 263
142 3300054114 Ga0501084_0024118 Ga0501084_0024118_640_1431 263
143 3300054114 Ga0501084_0103136 Ga0501084_0103136_805_1596 263
144 3300060353 Ga0501082_0155581 Ga0501082_0155581_513_1304 263
145 3300060353 Ga0501082_0543802 Ga0501082_0543802_20_811 263
146 3300061734 Ga0530510_0058028 Ga0530510_0058028_579_1370 263

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02361

CbiQ

Cobalt transport protein

28

251

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x41-assembly1.cif.gz_Q 3.5a resolution structure of a cobalt energy-coupling factor transporter using lcp method-cbimqo 0.6022 4 263
5x41-assembly1.cif.gz_Q 3.5a resolution structure of a cobalt energy-coupling factor transporter using lcp method-cbimqo 0.5865 4 263
8bmq-assembly1.cif.gz_D cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to amp-pnp 0.5475 8 259
6zg3-assembly2.cif.gz_D the structure of ecf pant transporter in a complex with a nanobody 0.534 8 262
8bmq-assembly1.cif.gz_D cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to amp-pnp 0.5303 8 259
ID Description Score Start End Superfamily
af_B3DKG3_25_169_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.3923 24 130 1.20.140.150
af_C6SW11_8_117_1.10.287.370 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.3461 23 128 1.10.287.370
af_P77672_36_301_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.3388 12 160 1.10.3470.10
af_A0A2R8QS32_13_259_1.20.1440.80 Mainly Alpha;Up-down Bundle;de novo design (two linked rop proteins);Gap junction channel protein cysteine-rich domain 0.3222 67 129 1.20.1440.80
af_B3DKG3_25_169_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.3136 24 130 1.20.140.150
ID Description Score Start End GO Terms
AF-X0WJ80-F1-model_v4 Cobalt transport protein 0.8693 1 132 GO:0005886
AF-A0A3L7YHT9-F1-model_v4 Energy-coupling factor transporter transmembrane protein EcfT 0.8625 12 161 GO:0005886
AF-A0A4Q3ITY1-F1-model_v4 deleted 0.8526 9 149
AF-A0A3L7YHT9-F1-model_v4 Energy-coupling factor transporter transmembrane protein EcfT 0.8518 12 161 GO:0005886
AF-X0WJ80-F1-model_v4 Cobalt transport protein 0.8508 1 132 GO:0005886

Feature Viewer

pLDDT pTM Quality
80.4 0.75 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map