F194038

General Info

Members Datasets Scaffolds Average Seq Length
145 118 139 373

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100010419|Ga0070698_1000104193
Length 402
Sequence VTAEAVKATTGTDSQVQADGRSASDAWSIPERRALRDVVAAFTAREIVPHLQQWEDAGEVSRTLSEKAGDLGLLSLGFPEAAGGAGTFVDSALVTEQIILSGGSSGLCSALMTHSIGASHIAAAGDARQIADYVAPALAGRKIASLAITEPDTGSDVSAIRTTAVRDGDDYLVTGAKTFITSGTRADFVTTAVRTGGPGHRGISLLIVDSATAGFSVAARLKKMGWLCSDTAELIFDRARVPAANLVGAEGTGFRQIMQRLDSERLLMAVQAYATAQRCVQLSRDWARTRHTFGQPLIQRQVIRHRLADMAREAATAQVYVRDVIARWSVGHAGPGEVAMAKNTAVFACDHVVDQAVQIHGGMGYMRETEVERHYRDARILGIGGGTNEMMNEIIAKQQDTT

Samples

Sample ID Description Type Environment
1 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
2 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
3 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
4 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
5 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
6 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
47 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
57 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
60 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
61 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
62 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
63 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
64 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
65 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
66 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
75 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
78 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
79 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
80 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
81 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
82 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
87 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
88 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
89 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
97 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
98 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
99 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
100 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
101 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
102 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
108 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
113 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
114 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
115 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
116 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
117 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
118 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.86
Metatranscriptomes 0
Isolates 4.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.14
Nodule 0
Rhizoplane 2.07
Rhizosphere 80
Stem 0
Stem Tuber 0
Unclassified 13.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100099992 3300005331 Bacteria 2496
2 Ga0070689_100036649 3300005340 Bacteria 3751
3 Ga0070667_100001901 3300005367 Bacteria 18532
4 Ga0070705_100069153 3300005440 Bacteria 2128
5 Ga0070681_10141750 3300005458 Bacteria 2333
6 Ga0070706_100001067 3300005467 Bacteria 29652
7 Ga0070706_100071093 3300005467 Bacteria 3218
8 Ga0070706_100244303 3300005467 Bacteria 1676
9 Ga0070698_100001034 3300005471 Bacteria 30618
10 Ga0070698_100010419 3300005471 Bacteria 9926
11 Ga0070698_100068990 3300005471 Bacteria 3551
12 Ga0070699_100097262 3300005518 Bacteria 2579
13 Ga0070684_100035537 3300005535 Bacteria 4265
14 Ga0070665_100012143 3300005548 Bacteria 8686
15 Ga0070664_100008422 3300005564 Bacteria 8339
16 Ga0068857_100086815 3300005577 Bacteria 2798
17 Ga0068856_100038461 3300005614 Bacteria 4697
18 Ga0068856_100323472 3300005614 Bacteria 1560
19 Ga0068864_100014529 3300005618 Bacteria 6542
20 Ga0081455_10000297 3300005937 Bacteria 65930
21 Ga0070717_10004968 3300006028 Bacteria 9675
22 Ga0070717_10017813 3300006028 Bacteria 5535
23 Ga0075428_100090090 3300006844 Bacteria 3345
24 Ga0075428_100256548 3300006844 Bacteria 1883
25 Ga0075430_100010653 3300006846 Bacteria 7791
26 Ga0075433_10138175 3300006852 Bacteria 2166
27 Ga0075434_100058449 3300006871 Bacteria 3832
28 Ga0075429_100002505 3300006880 Bacteria 15452
29 Ga0075429_100233594 3300006880 Bacteria 1611
30 Ga0075436_100004019 3300006914 Bacteria 10093
31 Ga0105245_10000087 3300009098 Bacteria 92249
32 Ga0114129_10052878 3300009147 Bacteria 5699
33 Ga0114129_10218574 3300009147 Bacteria 2572
34 Ga0157374_10011175 3300013296 Bacteria 7760
35 Ga0157378_10410701 3300013297 Bacteria 1336
36 Ga0157376_10013820 3300014969 Bacteria 6036
37 Ga0207684_10060535 3300025910 Bacteria 3216
38 Ga0207662_10018297 3300025918 Bacteria 3973
39 Ga0207652_10142824 3300025921 Bacteria 2141
40 Ga0207650_10171859 3300025925 Bacteria 1723
41 Ga0207687_10001543 3300025927 Bacteria 15812
42 Ga0207670_10012758 3300025936 Bacteria 4928
43 Ga0207689_10116004 3300025942 Bacteria 2201
44 Ga0207661_10001544 3300025944 Bacteria 15656
45 Ga0207658_10018289 3300025986 Bacteria 4837
46 Ga0207702_10027523 3300026078 Bacteria 4722
47 Ga0207674_10129704 3300026116 Bacteria 2485
48 Ga0207683_10013294 3300026121 Bacteria 7017
49 Ga0307517_10065464 3300028786 Bacteria 3362
50 Ga0307515_10015668 3300028794 Bacteria 13951
51 Ga0265338_10092750 3300028800 Bacteria 2490
52 Ga0265338_10101844 3300028800 Bacteria 2337
53 Ga0265327_10009225 3300031251 Bacteria 7156
54 Ga0307513_10001688 3300031456 Bacteria 31598
55 Ga0307509_10020035 3300031507 Bacteria 7604
56 Ga0307509_10020393 3300031507 Bacteria 7519
57 Ga0307509_10222416 3300031507 Bacteria 1699
58 Ga0307514_10077650 3300031649 Bacteria 2469
59 Ga0316576_10000205 3300031727 Bacteria 24884
60 Ga0316576_10014946 3300031727 Bacteria 5195
61 Ga0316578_10025851 3300031728 Bacteria 3305
62 Ga0316578_10182535 3300031728 Bacteria 1265
63 Ga0307516_10068268 3300031730 Bacteria 3424
64 Ga0316577_10007885 3300031733 Bacteria 5686
65 Ga0307413_10031826 3300031824 Bacteria 2982
66 Ga0307413_10074070 3300031824 Bacteria 2155
67 Ga0307406_10116389 3300031901 Bacteria 1849
68 Ga0307407_10002805 3300031903 Bacteria 6956
69 Ga0307409_100001974 3300031995 Bacteria 10511
70 Ga0307416_100081429 3300032002 Bacteria 2737
71 Ga0307415_100066926 3300032126 Bacteria 2509
72 Ga0373949_0000700 3300035090 Bacteria 10892
73 Ga0373936_0000039 3300035113 Bacteria 98144
74 Ga0373961_0000100 3300035241 Bacteria 46488
75 Ga0316582_0122068 3300036647 Bacteria 1744
76 Ga0316584_0000464 3300036712 Bacteria 21184
77 Ga0316584_0005454 3300036712 Bacteria 8537
78 Ga0395899_0035870 3300037312 Bacteria 3721
79 Ga0395899_0126739 3300037312 Bacteria 1825
80 Ga0395900_0029307 3300037418 Bacteria 5647
81 Ga0395898_0006827 3300037466 Bacteria 12140
82 Ga0395905_0016745 3300037471 Bacteria 6966
83 Ga0395905_0059215 3300037471 Bacteria 3580
84 Ga0395905_0100226 3300037471 Bacteria 2720
85 Ga0395901_0017494 3300038443 Bacteria 7317
86 Ga0395901_0036017 3300038443 Bacteria 5113
87 Ga0436365_0434216 3300039437 Bacteria 1469
88 Ga0451837_0716384 3300041494 Bacteria 1572
89 Ga0451839_1079015 3300041496 Bacteria 2336
90 Ga0451577_0009675 3300042876 Bacteria 9250
91 Ga0466961_0025583 3300044693 Bacteria 3795
92 Ga0453684_0014605 3300044712 Bacteria 12535
93 Ga0453684_0273516 3300044712 Bacteria 1929
94 Ga0466959_0062396 3300045049 Bacteria 2708
95 Ga0466958_0013684 3300045836 Bacteria 4624
96 Ga0495636_0087961 3300047318 Bacteria 1346
97 Ga0495686_0013026 3300047472 Bacteria 5791
98 Ga0496102_0000846 3300048905 Bacteria 29425
99 Ga0496103_0000860 3300048906 Bacteria 22092
100 Ga0496110_0031529 3300048913 Bacteria 4574
101 Ga0496116_0001425 3300048919 Bacteria 26878
102 Ga0496117_0001306 3300048920 Bacteria 36677
103 Ga0496118_0001856 3300048921 Bacteria 30242
104 Ga0496119_0033875 3300048922 Bacteria 3376
105 Ga0501034_0229412 3300049571 Bacteria 1806
106 Ga0501036_0077155 3300049572 Bacteria 2819
107 Ga0501038_0182528 3300049574 Bacteria 1692
108 Ga0501039_0003487 3300049575 Bacteria 11760
109 Ga0501041_0008191 3300049577 Bacteria 6151
110 Ga0501047_0015490 3300049581 Bacteria 7265
111 Ga0501047_0035060 3300049581 Bacteria 4846
112 Ga0501071_0015847 3300049587 Bacteria 5177
113 Ga0501072_0028831 3300049588 Bacteria 4334
114 Ga0501074_0127252 3300049590 Bacteria 1823
115 Ga0501075_0005366 3300049591 Bacteria 8769
116 Ga0501217_002771 3300049661 Bacteria 3486
117 Ga0501227_000488 3300049665 Bacteria 8442
118 Ga0501079_0001250 3300049741 Bacteria 17834
119 Ga0501080_0023301 3300049742 Bacteria 5740
120 Ga0501044_0008095 3300049823 Bacteria 11537
121 nmdc:mga05p37_34155_c1 3300050507 Bacteria 6229
122 nmdc:mga05p37_528520_c1 3300050507 Bacteria 1348
123 nmdc:mga09592_21809_c1 3300050508 Bacteria 5282
124 nmdc:mga0qj67_111714_c1 3300050509 Bacteria 2207
125 nmdc:mga06r32_118695_c1 3300050510 Bacteria 2608
126 nmdc:mga06r32_331640_c1 3300050510 Bacteria 1506
127 nmdc:mga08y16_45847_c1 3300050511 Bacteria 4579
128 nmdc:mga0n895_291601_c1 3300050512 Bacteria 1654
129 nmdc:mga0n895_55955_c1 3300050512 Bacteria 3884
130 nmdc:mga08x19_77973_c1 3300050514 Bacteria 2170
131 nmdc:mga0a205_42382_c1 3300050515 Bacteria 4386
132 Ga0500566_0017717 3300053094 Bacteria 4183
133 Ga0500566_0023370 3300053094 Bacteria 3630
134 Ga0500614_013471 3300053123 Bacteria 1797
135 Ga0500642_0012629 3300053130 Bacteria 3073
136 Ga0500603_007039 3300053150 Bacteria 2460
137 Ga0500636_0079709 3300053177 Bacteria 1888
138 Ga0501082_0001654 3300060353 Bacteria 19617
139 Ga0501082_0049590 3300060353 Bacteria 3621

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300060353 Ga0501082_0049590 Ga0501082_0049590_2652_3596 313
2 3300005618 Ga0068864_100014529 Ga0068864_1000145292 337
3 3300005937 Ga0081455_10000297 Ga0081455_1000029719 337
4 3300031649 Ga0307514_10077650 Ga0307514_100776502 342
5 3300037471 Ga0395905_0100226 Ga0395905_0100226_1470_2612 343
6 3300053094 Ga0500566_0023370 Ga0500566_0023370_487_1644 343
7 3300005440 Ga0070705_100069153 Ga0070705_1000691533 344
8 3300031507 Ga0307509_10222416 Ga0307509_102224161 344
9 3300035090 Ga0373949_0000700 Ga0373949_0000700_6234_7391 344
10 3300049581 Ga0501047_0015490 Ga0501047_0015490_430_1572 344
11 3300049823 Ga0501044_0008095 Ga0501044_0008095_6678_7820 344
12 3300005340 Ga0070689_100036649 Ga0070689_1000366493 345
13 3300025918 Ga0207662_10018297 Ga0207662_100182972 345
14 3300025936 Ga0207670_10012758 Ga0207670_100127582 345
15 3300013296 Ga0157374_10011175 Ga0157374_100111755 346
16 3300026121 Ga0207683_10013294 Ga0207683_100132942 346
17 3300049581 Ga0501047_0035060 Ga0501047_0035060_1757_2899 346
18 3300039437 Ga0436365_0434216 Ga0436365_0434216_273_1415 348
19 3300053123 Ga0500614_013471 Ga0500614_013471_157_1314 348
20 3300053177 Ga0500636_0079709 Ga0500636_0079709_49_1206 348
21 3300006844 Ga0075428_100256548 Ga0075428_1002565482 351
22 3300006846 Ga0075430_100010653 Ga0075430_1000106535 351
23 3300031507 Ga0307509_10020035 Ga0307509_100200355 351
24 3300050507 nmdc:mga05p37_528520_c1 nmdc:mga05p37_528520_c1_178_1311 351
25 3300050508 nmdc:mga09592_21809_c1 nmdc:mga09592_21809_c1_2240_3373 351
26 3300050509 nmdc:mga0qj67_111714_c1 nmdc:mga0qj67_111714_c1_1037_2170 351
27 3300050510 nmdc:mga06r32_118695_c1 nmdc:mga06r32_118695_c1_875_2008 351
28 3300006028 Ga0070717_10017813 Ga0070717_100178132 352
29 3300028794 Ga0307515_10015668 Ga0307515_100156686 352
30 3300025942 Ga0207689_10116004 Ga0207689_101160042 353
31 3300031824 Ga0307413_10074070 Ga0307413_100740702 353
32 3300031901 Ga0307406_10116389 Ga0307406_101163892 353
33 3300031903 Ga0307407_10002805 Ga0307407_100028056 353
34 3300031995 Ga0307409_100001974 Ga0307409_1000019743 353
35 3300032002 Ga0307416_100081429 Ga0307416_1000814292 353
36 3300006880 Ga0075429_100233594 Ga0075429_1002335942 354
37 3300050510 nmdc:mga06r32_331640_c1 nmdc:mga06r32_331640_c1_331_1491 354
38 3300037312 Ga0395899_0035870 Ga0395899_0035870_1566_2705 355
39 3300037466 Ga0395898_0006827 Ga0395898_0006827_3565_4704 355
40 3300037471 Ga0395905_0059215 Ga0395905_0059215_724_1863 355
41 3300038443 Ga0395901_0036017 Ga0395901_0036017_786_1925 355
42 3300031456 Ga0307513_10001688 Ga0307513_1000168812 360
43 3300013297 Ga0157378_10410701 Ga0157378_104107011 366
44 3300053094 Ga0500566_0017717 Ga0500566_0017717_2887_4029 366
45 3300053150 Ga0500603_007039 Ga0500603_007039_804_1946 366
46 3300005548 Ga0070665_100012143 Ga0070665_1000121432 371
47 iso_pu_bacteria 2773857762 2774396958 371
48 iso_pu_bacteria 2808606439 2809198607 371
49 iso_pu_bacteria 2811994878 2812352823 371
50 iso_pu_bacteria 2866552031 2866552121 371
51 iso_pu_bacteria 2891968417 2891969634 371
52 3300049572 Ga0501036_0077155 Ga0501036_0077155_1444_2577 373
53 3300005458 Ga0070681_10141750 Ga0070681_101417502 375
54 3300031824 Ga0307413_10031826 Ga0307413_100318262 375
55 3300038443 Ga0395901_0017494 Ga0395901_0017494_5221_6366 375
56 3300047318 Ga0495636_0087961 Ga0495636_0087961_84_1223 375
57 3300049574 Ga0501038_0182528 Ga0501038_0182528_495_1634 375
58 3300049575 Ga0501039_0003487 Ga0501039_0003487_7614_8753 375
59 3300049577 Ga0501041_0008191 Ga0501041_0008191_2553_3692 375
60 3300049588 Ga0501072_0028831 Ga0501072_0028831_2006_3145 375
61 3300049590 Ga0501074_0127252 Ga0501074_0127252_239_1378 375
62 3300049591 Ga0501075_0005366 Ga0501075_0005366_4404_5543 375
63 3300049741 Ga0501079_0001250 Ga0501079_0001250_1730_2869 375
64 3300049742 Ga0501080_0023301 Ga0501080_0023301_4202_5341 375
65 3300060353 Ga0501082_0001654 Ga0501082_0001654_1641_2780 375
66 3300006852 Ga0075433_10138175 Ga0075433_101381752 376
67 3300006871 Ga0075434_100058449 Ga0075434_1000584493 376
68 3300009147 Ga0114129_10218574 Ga0114129_102185742 376
69 3300050512 nmdc:mga0n895_291601_c1 nmdc:mga0n895_291601_c1_276_1418 376
70 3300050512 nmdc:mga0n895_55955_c1 nmdc:mga0n895_55955_c1_2078_3220 376
71 3300050515 nmdc:mga0a205_42382_c1 nmdc:mga0a205_42382_c1_646_1788 376
72 3300005467 Ga0070706_100001067 Ga0070706_10000106729 377
73 3300005518 Ga0070699_100097262 Ga0070699_1000972624 377
74 3300005535 Ga0070684_100035537 Ga0070684_1000355373 377
75 3300005564 Ga0070664_100008422 Ga0070664_1000084229 377
76 3300005577 Ga0068857_100086815 Ga0068857_1000868152 377
77 3300005614 Ga0068856_100038461 Ga0068856_1000384613 377
78 3300006844 Ga0075428_100090090 Ga0075428_1000900903 377
79 3300006880 Ga0075429_100002505 Ga0075429_10000250516 377
80 3300006914 Ga0075436_100004019 Ga0075436_1000040193 377
81 3300009147 Ga0114129_10052878 Ga0114129_100528784 377
82 3300025944 Ga0207661_10001544 Ga0207661_100015445 377
83 3300026078 Ga0207702_10027523 Ga0207702_100275234 377
84 3300026116 Ga0207674_10129704 Ga0207674_101297042 377
85 3300042876 Ga0451577_0009675 Ga0451577_0009675_7801_8958 377
86 3300044712 Ga0453684_0014605 Ga0453684_0014605_11127_12284 377
87 3300050507 nmdc:mga05p37_34155_c1 nmdc:mga05p37_34155_c1_511_1656 377
88 3300050511 nmdc:mga08y16_45847_c1 nmdc:mga08y16_45847_c1_528_1673 377
89 3300050514 nmdc:mga08x19_77973_c1 nmdc:mga08x19_77973_c1_837_1982 377
90 3300005467 Ga0070706_100071093 Ga0070706_1000710934 378
91 3300005471 Ga0070698_100068990 Ga0070698_1000689901 378
92 3300005614 Ga0068856_100323472 Ga0068856_1003234722 378
93 3300009098 Ga0105245_10000087 Ga0105245_1000008757 378
94 3300014969 Ga0157376_10013820 Ga0157376_100138204 378
95 3300025921 Ga0207652_10142824 Ga0207652_101428242 378
96 3300025927 Ga0207687_10001543 Ga0207687_100015439 378
97 3300031507 Ga0307509_10020393 Ga0307509_100203936 378
98 3300005367 Ga0070667_100001901 Ga0070667_10000190116 379
99 3300005471 Ga0070698_100010419 Ga0070698_1000104193 379
100 3300025986 Ga0207658_10018289 Ga0207658_100182893 379
101 3300031727 Ga0316576_10000205 Ga0316576_1000020515 379
102 3300031728 Ga0316578_10025851 Ga0316578_100258513 379
103 3300031733 Ga0316577_10007885 Ga0316577_100078854 379
104 3300036647 Ga0316582_0122068 Ga0316582_0122068_346_1512 379
105 3300036712 Ga0316584_0000464 Ga0316584_0000464_14461_15627 379
106 3300048905 Ga0496102_0000846 Ga0496102_0000846_6076_7248 379
107 3300048906 Ga0496103_0000860 Ga0496103_0000860_15180_16352 379
108 3300048913 Ga0496110_0031529 Ga0496110_0031529_2654_3826 379
109 3300048919 Ga0496116_0001425 Ga0496116_0001425_22189_23361 379
110 3300048920 Ga0496117_0001306 Ga0496117_0001306_22197_23369 379
111 3300048921 Ga0496118_0001856 Ga0496118_0001856_5948_7120 379
112 3300048922 Ga0496119_0033875 Ga0496119_0033875_1601_2773 379
113 3300006028 Ga0070717_10004968 Ga0070717_100049683 380
114 3300028786 Ga0307517_10065464 Ga0307517_100654642 380
115 3300028800 Ga0265338_10092750 Ga0265338_100927502 380
116 3300028800 Ga0265338_10101844 Ga0265338_101018442 380
117 3300031251 Ga0265327_10009225 Ga0265327_100092257 380
118 3300031727 Ga0316576_10014946 Ga0316576_100149464 380
119 3300031728 Ga0316578_10182535 Ga0316578_101825351 380
120 3300031730 Ga0307516_10068268 Ga0307516_100682682 380
121 3300035113 Ga0373936_0000039 Ga0373936_0000039_8052_9197 380
122 3300035241 Ga0373961_0000100 Ga0373961_0000100_24883_26043 380
123 3300036712 Ga0316584_0005454 Ga0316584_0005454_6443_7597 380
124 3300037312 Ga0395899_0126739 Ga0395899_0126739_39_1181 380
125 3300037418 Ga0395900_0029307 Ga0395900_0029307_2920_4062 380
126 3300037471 Ga0395905_0016745 Ga0395905_0016745_5504_6646 380
127 3300044693 Ga0466961_0025583 Ga0466961_0025583_2069_3217 380
128 3300053130 Ga0500642_0012629 Ga0500642_0012629_1038_2213 380
129 iso_pu_bacteria 2932398195 2932401167 380
130 3300045049 Ga0466959_0062396 Ga0466959_0062396_846_2039 381
131 3300045836 Ga0466958_0013684 Ga0466958_0013684_1358_2569 381
132 3300005331 Ga0070670_100099992 Ga0070670_1000999922 382
133 3300005467 Ga0070706_100244303 Ga0070706_1002443031 382
134 3300005471 Ga0070698_100001034 Ga0070698_10000103419 382
135 3300025910 Ga0207684_10060535 Ga0207684_100605352 382
136 3300025925 Ga0207650_10171859 Ga0207650_101718592 382
137 3300032126 Ga0307415_100066926 Ga0307415_1000669262 382
138 3300041494 Ga0451837_0716384 Ga0451837_0716384_95_1258 382
139 3300041496 Ga0451839_1079015 Ga0451839_1079015_1100_2263 382
140 3300044712 Ga0453684_0273516 Ga0453684_0273516_718_1866 382
141 3300047472 Ga0495686_0013026 Ga0495686_0013026_3645_4796 382
142 3300049571 Ga0501034_0229412 Ga0501034_0229412_277_1428 382
143 3300049587 Ga0501071_0015847 Ga0501071_0015847_2602_3753 382
144 3300049661 Ga0501217_002771 Ga0501217_002771_1447_2595 382
145 3300049665 Ga0501227_000488 Ga0501227_000488_6107_7255 382

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

251

399

0.99

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

145

239

0.95

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

266

388

0.91

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

29

141

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3r7k-assembly1.cif.gz_D crystal structure of a probable acyl coa dehydrogenase from mycobacterium abscessus atcc 19977 / dsm 44196 0.9766 7 381
3oib-assembly1.cif.gz_A crystal structure of a putative acyl-coa dehydrogenase from mycobacterium smegmatis, iodide soak 0.9761 4 381
3r7k-assembly1.cif.gz_D crystal structure of a probable acyl coa dehydrogenase from mycobacterium abscessus atcc 19977 / dsm 44196 0.9664 7 381
1rx0-assembly1.cif.gz_C crystal structure of isobutyryl-coa dehydrogenase complexed with substrate/ligand. 0.9635 4 380
3oib-assembly1.cif.gz_A crystal structure of a putative acyl-coa dehydrogenase from mycobacterium smegmatis, iodide soak 0.9635 4 381
ID Description Score Start End Superfamily
af_Q9D7B6_155_263_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9828 124 231 2.40.110.10
af_A0A0K3AQR2_269_362_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9699 241 326 1.20.140.10
2pg0A02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9693 124 228 2.40.110.10
6fahC02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9691 124 237 2.40.110.10
6cy8B02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9686 124 228 2.40.110.10
ID Description Score Start End GO Terms
AF-A0A5R2MXK0-F1-model_v4 Acyl-CoA dehydrogenase 0.9848 216 333 GO:0016627
AF-L8MDF1-F1-model_v4 deleted 0.9763 2 382
AF-A0A437CAG7-F1-model_v4 Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial (EC 1.3.8.5) (2-methyl branched chain acyl-CoA dehydrogenase) (2-methylbutyryl-coenzyme A dehydrogenase) 0.976 122 291 GO:0003995
GO:0005739
GO:0006631
AF-A0A2G5MV78-F1-model_v4 Acyl-CoA dehydrogenase 0.9738 164 295 GO:0003995
AF-A0A2N2L4N4-F1-model_v4 Acyl-CoA dehydrogenase 0.9703 1 378 GO:0003995
GO:0050660

Feature Viewer

pLDDT pTM Quality
93.49 0.92 High
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Predicted Structure (AlphaFold2)

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