F191216

General Info

Members Datasets Scaffolds Average Seq Length
144 108 288 211

Family's Representative Sequence

Representative Sequence 3300005615|Ga0070702_100132150|Ga0070702_1001321502
Length 228
Sequence MDEPRVAPDEPVVSDEPTADGPAMVALDHPRFRTVWASIFTRRLAADCMTHRCTMVETHSEKLDACCQYGCDVDLAERAAIEARGDEIRALLRPEVKDARWFDPEEEVDSDYPSGRVVRTEVHDGGCIFLAHDRRGCAIHRAALENGWDFRGVKPAICRLFPLSYEEDAIVIADEYPEYSCAHVEGPTLYRITRDALGDIFGPDLVVALDAAEAQVLGAAPRRLPIAR

Samples

Sample ID Description Type Environment
1 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
33 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
53 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
54 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
55 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
56 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
57 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
58 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
68 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
69 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
70 3300049518 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
79 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
80 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
81 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
82 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
83 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
88 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
89 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
90 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
91 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
92 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
93 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
94 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
95 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
96 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
97 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
98 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
99 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
100 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
101 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
102 3300053144 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere Metagenome Endosphere
103 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
104 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
105 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
106 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.36
Nodule 0
Rhizoplane 2.08
Rhizosphere 72.22
Stem 0
Stem Tuber 0
Unclassified 18.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070702_100132150 3300005615 Bacteria 1578
2 rootH2_10060487 3300003320 Bacteria 3638
3 Ga0070683_100137454 3300005329 Bacteria 2315
4 Ga0070690_100011649 3300005330 Bacteria 5150
5 Ga0068869_100114793 3300005334 Bacteria 2053
6 Ga0068869_100147393 3300005334 Unclassified 1822
7 Ga0068869_100650021 3300005334 Unclassified 895
8 Ga0070689_100044136 3300005340 Bacteria 3429
9 Ga0070689_100051217 3300005340 Bacteria 3191
10 Ga0070687_100255411 3300005343 Bacteria 1091
11 Ga0070687_100290460 3300005343 Unclassified 1033
12 Ga0070674_100015133 3300005356 Bacteria 4809
13 Ga0070688_100221146 3300005365 Unclassified 1334
14 Ga0070701_10011412 3300005438 Bacteria 3971
15 Ga0070705_100298687 3300005440 Bacteria 1153
16 Ga0070678_100328292 3300005456 Unclassified 1308
17 Ga0070685_10171934 3300005466 Bacteria 1389
18 Ga0070707_101301652 3300005468 Unclassified 693
19 Ga0070698_100005800 3300005471 Bacteria 13503
20 Ga0070698_100419150 3300005471 Bacteria 1273
21 Ga0070679_100004421 3300005530 Bacteria 12992
22 Ga0070679_100461541 3300005530 Bacteria 1215
23 Ga0070665_100019451 3300005548 Bacteria 6815
24 Ga0070665_100753221 3300005548 Bacteria 987
25 Ga0068856_100016219 3300005614 Bacteria 7208
26 Ga0068859_100283991 3300005617 Unclassified 1748
27 Ga0068859_100781106 3300005617 Unclassified 1043
28 Ga0068864_100657345 3300005618 Bacteria 1021
29 Ga0068863_100018912 3300005841 Bacteria 6593
30 Ga0068860_100093555 3300005843 Bacteria 2865
31 Ga0068860_100997805 3300005843 Unclassified 855
32 Ga0070717_10020630 3300006028 Bacteria 5186
33 Ga0075428_100351527 3300006844 Bacteria 1582
34 Ga0075429_100093748 3300006880 Bacteria 2618
35 Ga0097620_100284003 3300006931 Unclassified 1748
36 Ga0097620_100781260 3300006931 Unclassified 1043
37 Ga0105245_10000101 3300009098 Bacteria 83242
38 Ga0105245_10121200 3300009098 Bacteria 2444
39 Ga0105249_10086141 3300009553 Bacteria 2929
40 Ga0157374_10056940 3300013296 Bacteria 3650
41 Ga0157372_10777416 3300013307 Bacteria 1113
42 Ga0157376_10057218 3300014969 Unclassified 3260
43 Ga0213876_10188085 3300021384 Bacteria 1098
44 Ga0207642_10424725 3300025899 Bacteria 800
45 Ga0207662_10200783 3300025918 Unclassified 1291
46 Ga0207652_10254961 3300025921 Bacteria 1582
47 Ga0207652_10468665 3300025921 Unclassified 1135
48 Ga0207687_10000326 3300025927 Bacteria 32457
49 Ga0207687_10073802 3300025927 Bacteria 2443
50 Ga0207670_10571662 3300025936 Unclassified 925
51 Ga0207711_10703180 3300025941 Unclassified 943
52 Ga0207689_10090875 3300025942 Bacteria 2509
53 Ga0207689_10536010 3300025942 Unclassified 982
54 Ga0207708_10188109 3300026075 Bacteria 1642
55 Ga0207702_10841037 3300026078 Bacteria 908
56 Ga0207641_10015224 3300026088 Bacteria 6303
57 Ga0207676_10160876 3300026095 Bacteria 1945
58 Ga0207675_100078719 3300026118 Bacteria 3089
59 Ga0207683_10050289 3300026121 Bacteria 3651
60 Ga0207683_10850770 3300026121 Unclassified 847
61 Ga0268266_10006406 3300028379 Bacteria 10788
62 Ga0268264_10077176 3300028381 Bacteria 2837
63 Ga0268264_10525079 3300028381 Unclassified 1158
64 Ga0307517_10022749 3300028786 Bacteria 7836
65 Ga0307515_10107704 3300028794 Bacteria 3291
66 Ga0307513_10001371 3300031456 Bacteria 35088
67 Ga0307509_10000396 3300031507 Bacteria 73104
68 Ga0307509_10000945 3300031507 Bacteria 49660
69 Ga0307509_10021963 3300031507 Bacteria 7205
70 Ga0307509_10412927 3300031507 Bacteria 1053
71 Ga0307508_10032259 3300031616 Bacteria 4732
72 Ga0307507_10188473 3300033179 Unclassified 1456
73 Ga0373949_0002788 3300035090 Bacteria 4353
74 Ga0373936_0000054 3300035113 Bacteria 61979
75 Ga0373939_0223098 3300035114 Bacteria 722
76 Ga0373941_0029297 3300035115 Bacteria 1623
77 Ga0373941_0257392 3300035115 Bacteria 683
78 Ga0373961_0000230 3300035241 Bacteria 26225
79 Ga0395899_0102957 3300037312 Bacteria 2059
80 Ga0395900_0043501 3300037418 Bacteria 4629
81 Ga0395900_0120429 3300037418 Bacteria 2693
82 Ga0395898_0311458 3300037466 Bacteria 1502
83 Ga0395905_0183787 3300037471 Bacteria 1963
84 Ga0395901_0124892 3300038443 Bacteria 2704
85 Ga0395901_0151528 3300038443 Bacteria 2436
86 Ga0436365_0657370 3300039437 Bacteria 9431
87 Ga0451797_0376328 3300041453 Bacteria 833
88 Ga0466967_0105076 3300045976 Bacteria 2587
89 Ga0495622_0019376 3300046557 Bacteria 3168
90 Ga0496112_0435286 3300048915 Bacteria 1250
91 Ga0496115_0523147 3300048918 Bacteria 951
92 Ga0501295_029531 3300049518 Bacteria 1072
93 Ga0501034_0117606 3300049571 Bacteria 2646
94 Ga0501034_0379298 3300049571 Unclassified 1339
95 Ga0501037_0279333 3300049573 Bacteria 1164
96 Ga0501047_0018625 3300049581 Bacteria 6657
97 Ga0501047_0177463 3300049581 Bacteria 1997
98 Ga0501069_0211603 3300049585 Unclassified 1125
99 Ga0501070_0032023 3300049586 Bacteria 4403
100 Ga0501070_0045362 3300049586 Bacteria 3655
101 Ga0501070_0239187 3300049586 Bacteria 1486
102 Ga0501071_0009844 3300049587 Bacteria 6382
103 Ga0501073_0123882 3300049589 Bacteria 1792
104 Ga0501073_0178240 3300049589 Bacteria 1471
105 Ga0501217_025677 3300049661 Bacteria 1419
106 Ga0501227_010682 3300049665 Bacteria 1992
107 Ga0501227_011918 3300049665 Bacteria 1900
108 Ga0501233_002977 3300049668 Bacteria 3026
109 Ga0501229_007524 3300049706 Bacteria 1357
110 Ga0501081_0170170 3300049743 Bacteria 1573
111 Ga0501083_0102439 3300049744 Bacteria 1887
112 Ga0501035_0438828 3300049822 Unclassified 1082
113 Ga0501044_0057038 3300049823 Bacteria 4008
114 Ga0501044_0091378 3300049823 Bacteria 3071
115 nmdc:mga09592_24820_c1 3300050508 Bacteria 4956
116 nmdc:mga09592_62740_c1 3300050508 Bacteria 3144
117 nmdc:mga0rr50_414225_c1 3300050513 Bacteria 1139
118 Ga0500635_0002922 3300053080 Bacteria 4255
119 Ga0500578_0168762 3300053086 Unclassified 1354
120 Ga0500646_0049481 3300053090 Unclassified 1208
121 Ga0500647_0025907 3300053091 Bacteria 2765
122 Ga0500583_0316138 3300053092 Unclassified 762
123 Ga0500566_0001063 3300053094 Bacteria 15891
124 Ga0500566_0006419 3300053094 Bacteria 6980
125 Ga0500566_0044214 3300053094 Bacteria 2566
126 Ga0500640_000365 3300053095 Bacteria 10591
127 Ga0500554_000254 3300053102 Bacteria 11502
128 Ga0500595_000180 3300053119 Bacteria 42688
129 Ga0500597_013518 3300053120 Bacteria 3032
130 Ga0500597_141242 3300053120 Bacteria 1037
131 Ga0500614_000164 3300053123 Bacteria 16776
132 Ga0500614_084921 3300053123 Bacteria 892
133 Ga0500642_0022406 3300053130 Bacteria 2520
134 Ga0500559_0008140 3300053136 Bacteria 4614
135 Ga0500559_0042012 3300053136 Bacteria 1994
136 Ga0500559_0275053 3300053136 Bacteria 792
137 Ga0500568_0037780 3300053139 Bacteria 1957
138 Ga0500585_128688 3300053144 Bacteria 898
139 Ga0500603_097593 3300053150 Bacteria 869
140 Ga0500638_095735 3300053162 Bacteria 1392
141 Ga0500636_0015378 3300053177 Bacteria 4509
142 Ga0500637_0115355 3300053178 Bacteria 1558
143 Ga0501084_0850700 3300054114 Unclassified 768
144 Ga0501082_0053234 3300060353 Bacteria 3489
145 Ga0070702_100132150
146 rootH2_10060487
147 Ga0070683_100137454
148 Ga0070690_100011649
149 Ga0068869_100114793
150 Ga0068869_100147393
151 Ga0068869_100650021
152 Ga0070689_100044136
153 Ga0070689_100051217
154 Ga0070687_100255411
155 Ga0070687_100290460
156 Ga0070674_100015133
157 Ga0070688_100221146
158 Ga0070701_10011412
159 Ga0070705_100298687
160 Ga0070678_100328292
161 Ga0070685_10171934
162 Ga0070707_101301652
163 Ga0070698_100005800
164 Ga0070698_100419150
165 Ga0070679_100004421
166 Ga0070679_100461541
167 Ga0070665_100019451
168 Ga0070665_100753221
169 Ga0068856_100016219
170 Ga0068859_100283991
171 Ga0068859_100781106
172 Ga0068864_100657345
173 Ga0068863_100018912
174 Ga0068860_100093555
175 Ga0068860_100997805
176 Ga0070717_10020630
177 Ga0075428_100351527
178 Ga0075429_100093748
179 Ga0097620_100284003
180 Ga0097620_100781260
181 Ga0105245_10000101
182 Ga0105245_10121200
183 Ga0105249_10086141
184 Ga0157374_10056940
185 Ga0157372_10777416
186 Ga0157376_10057218
187 Ga0213876_10188085
188 Ga0207642_10424725
189 Ga0207662_10200783
190 Ga0207652_10254961
191 Ga0207652_10468665
192 Ga0207687_10000326
193 Ga0207687_10073802
194 Ga0207670_10571662
195 Ga0207711_10703180
196 Ga0207689_10090875
197 Ga0207689_10536010
198 Ga0207708_10188109
199 Ga0207702_10841037
200 Ga0207641_10015224
201 Ga0207676_10160876
202 Ga0207675_100078719
203 Ga0207683_10050289
204 Ga0207683_10850770
205 Ga0268266_10006406
206 Ga0268264_10077176
207 Ga0268264_10525079
208 Ga0307517_10022749
209 Ga0307515_10107704
210 Ga0307513_10001371
211 Ga0307509_10000396
212 Ga0307509_10000945
213 Ga0307509_10021963
214 Ga0307509_10412927
215 Ga0307508_10032259
216 Ga0307507_10188473
217 Ga0373949_0002788
218 Ga0373936_0000054
219 Ga0373939_0223098
220 Ga0373941_0029297
221 Ga0373941_0257392
222 Ga0373961_0000230
223 Ga0395899_0102957
224 Ga0395900_0043501
225 Ga0395900_0120429
226 Ga0395898_0311458
227 Ga0395905_0183787
228 Ga0395901_0124892
229 Ga0395901_0151528
230 Ga0436365_0657370
231 Ga0451797_0376328
232 Ga0466967_0105076
233 Ga0495622_0019376
234 Ga0496112_0435286
235 Ga0496115_0523147
236 Ga0501295_029531
237 Ga0501034_0117606
238 Ga0501034_0379298
239 Ga0501037_0279333
240 Ga0501047_0018625
241 Ga0501047_0177463
242 Ga0501069_0211603
243 Ga0501070_0032023
244 Ga0501070_0045362
245 Ga0501070_0239187
246 Ga0501071_0009844
247 Ga0501073_0123882
248 Ga0501073_0178240
249 Ga0501217_025677
250 Ga0501227_010682
251 Ga0501227_011918
252 Ga0501233_002977
253 Ga0501229_007524
254 Ga0501081_0170170
255 Ga0501083_0102439
256 Ga0501035_0438828
257 Ga0501044_0057038
258 Ga0501044_0091378
259 nmdc:mga09592_24820_c1
260 nmdc:mga09592_62740_c1
261 nmdc:mga0rr50_414225_c1
262 Ga0500635_0002922
263 Ga0500578_0168762
264 Ga0500646_0049481
265 Ga0500647_0025907
266 Ga0500583_0316138
267 Ga0500566_0001063
268 Ga0500566_0006419
269 Ga0500566_0044214
270 Ga0500640_000365
271 Ga0500554_000254
272 Ga0500595_000180
273 Ga0500597_013518
274 Ga0500597_141242
275 Ga0500614_000164
276 Ga0500614_084921
277 Ga0500642_0022406
278 Ga0500559_0008140
279 Ga0500559_0042012
280 Ga0500559_0275053
281 Ga0500568_0037780
282 Ga0500585_128688
283 Ga0500603_097593
284 Ga0500638_095735
285 Ga0500636_0015378
286 Ga0500637_0115355
287 Ga0501084_0850700
288 Ga0501082_0053234

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11307

DUF3109

Protein of unknown function (DUF3109)

47

210

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5tcu-assembly1.cif.gz_SF methicillin sensitive staphylococcus aureus 70s ribosome 0.3525 50 117
3mgk-assembly1.cif.gz_A crystal structure of probable protease/amidase from clostridium acetobutylicum atcc 824 0.3452 150 207
5wvc-assembly1.cif.gz_F structure of the card-card disk 0.3389 56 209
5wvc-assembly1.cif.gz_F structure of the card-card disk 0.3362 56 209
2cgh-assembly1.cif.gz_A crystal structure of biotin ligase from mycobacterium tuberculosis 0.331 61 134
ID Description Score Start End Superfamily
af_Q93VL5_392_505_1.20.1310.10 Mainly Alpha;Up-down Bundle;5 helical Cullin repeat like;Cullin Repeats 0.6442 171 207 1.20.1310.10
af_Q9SRZ0_386_501_1.20.1310.10 Mainly Alpha;Up-down Bundle;5 helical Cullin repeat like;Cullin Repeats 0.6297 171 207 1.20.1310.10
af_C6KSP9_382_457_3.30.1370.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S8; Chain: A, domain 1;K Homology domain, type 1 0.3734 56 134 3.30.1370.10
af_Q4D6D8_1_194_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.3622 150 209 3.40.50.880
af_C6KSP9_382_457_3.30.1370.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S8; Chain: A, domain 1;K Homology domain, type 1 0.3496 56 134 3.30.1370.10
ID Description Score Start End GO Terms
AF-A0A7W0VM77-F1-model_v4 DUF3109 family protein 0.9321 7 216
AF-A0A7W0VM77-F1-model_v4 DUF3109 family protein 0.9278 7 216
AF-A0A538QRI7-F1-model_v4 DUF3109 family protein 0.9168 2 216
AF-A0A538QRI7-F1-model_v4 DUF3109 family protein 0.8929 2 216
AF-A0A3M2DHZ6-F1-model_v4 DUF3109 family protein 0.882 1 206

Map